 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | PMM2,ARL16,SLIRP,TCEA2,OXNAD1,BOD1,PRPSAP2,MFSD8,NUP43,KRT10,ANAPC1,FASTKD3,CIRBP,MZF1,CMC2,ATP5MG,CNOT9,SRP19,SUGP2,VAMP4,N4BP2L2,BCS1L,OXSM,L3HYPDH,DMTF1,ZDHHC23,TRUB2,PHF10,MAK16,LMBR1L,ZNF24,HSDL1,WDCP,PIGW,ULK3,PIGX,RPL26L1,HARS1,METTL5,VMP1,ZFP14,CENATAC,WDR5B,ST7L,WDR54,KCTD13,DTYMK,APTX,MSANTD2,TUBGCP6,CCDC14,FAM200A,CHKA,ABITRAM,STRBP,CLK4,POLR2K,COMMD2,C9orf85,FAM133B,ZBED5,RABGGTB,ACTR6,UBA2,TTC14,KNTC1,RANBP6,CREB1,SUDS3,GKAP1,TAZ,SPG7,EXOC8,PPIP5K2,DPY19L4,FAM104B,C19orf44,NDUFB2,UQCR11,SIAH1,GTF2H5,SMAD2,GLRX5,RCCD1,OGT,SCML1,ARIH1,BNIP1,CBX3,COX19,ERAL1,CLK2,WDR70,NCBP1,MYEF2,TARBP2,ILKAP,BLZF1,MPLKIP,POLG2,LYPLAL1,RBM15,CHKB,PSIP1,IFT81,METTL17,CEP89,UBE3A,ANAPC10,RPAP3,BBIP1,CBY1,WDR83,OSGEP,THOC2,CLK1,ZBTB6,UBLCP1,MRRF,ITGB3BP,GABPB1,NASP,ANKRD39,ARMC10,RPAIN,WASHC3,OFD1,HSPE1,VPS36,ACYP1,INTS6,RFX7,TOMM40,CDKN2AIPNL,COPS3,CFAP298,MIS12,DERL2,RSRC2,TTC21B,ZNHIT6,FANCF,KPNA4,C4orf46,C3orf62,EIF2A,RDH14,UTP23,NIP7,SETD5,MIS18BP1,ZFP62,ARL15,SOCS4,MDN1,CDC27,CERS6,ALKBH2,ZBED8,CHIC1,ORMDL1,BRAF,TIMM8A,C18orf21,C22orf39,COQ6,C12orf73,DONSON,AGER,BRIX1,NKAPD1,ORC2,GUF1,SPOUT1,SLC35F5,SBNO1,SRSF2,C1orf52,MRPL32,ATG4B,SUPT20H,RSRC1,NT5C3A,CHST10,DCUN1D2,UBXN2A,EIF2B1,UQCC1,FIGNL1,C6orf62,C2orf76,ERGIC2,R3HDM1,PPP4R2,RIOK1,SMARCAD1,HMGN3,EBPL,ZNF14,NDUFB1,STK25,XPO1,ACOT8,METTL4,CIR1,ZFC3H1,PDRG1,ARHGAP33,NFYB,MBTD1,HDDC2,SP3,HEXD,COA6,HDAC8,DDX42,CCNT1,VCPKMT,DENR,TTC3,CEP192,MRPS25,CDK7,FAM204A,PTRHD1,SVIP,PALB2,EIF2AK2,ABCE1,ZNF69,ATPAF1,PGGT1B,ATF7IP,THOC7,GCA,SELENOI,METTL18,MARCHF6,LTN1,HERC4,ZNF30,SKA2,TMEM168,DPM1,RAB28,RTRAF,ATM,CEP20,THADA,FAM172A,FLVCR1,NDUFB3,FANCL,MED14,GLI4,CDK13,DPY19L3,LENG8,MED7,DDX56,PRR3,FAM98C,NFU1,WBP4,CEP57,UBE2G2,COX5A,IP6K2,PPOX,NEMP2,SPICE1,WDR53,PPWD1,DBF4,IFTAP,TRMT6,GSK3B,SASS6,RBM27,ATG12,PIBF1,RPL23,FASTKD1,INO80D,NHLRC3,ICE2,AGK,COX16,EIF2B4,CRLF3,TIMM44,CNOT6L,DDX55,HSCB,ADPRM,ARFGAP1,MIX23,HPF1,CAPN10,KRIT1,GLMN,ACYP2,METTL21A,GCFC2,FAM136A,THOC1,RPL37A,LSM3,UBA6,TRNT1,ASF1A,NUTF2,ACBD6,ZZZ3,ODR4,ZMYM5,TAMM41,PDP2,TMED8,AP5M1,SLC4A3,MRPL24,RC3H1,PCBP2,MRM1,MZT1,NUDT3,XPO4,AP1AR,TMEM138,DENND11,SMG1,MRM3,FGFR1OP2,RIMKLB,LTO1,GRPEL2,METAP1D,XIAP,BCLAF3,TBCA,TMEM251,DNAJB14,CWC15,ZCCHC9,PUS7L,MED6,GGCT,IFT80,LAS1L,CEP83,HMGB1,GGNBP2,RFC4,UBN2,METTL23,DDX6,TRMT2B,TSN,C17orf75,LRIG2,PCED1A,TUSC2,SMCHD1,ELP5,DYNLT2,CEP70,ZC3H8,METTL16,GNL2,BPNT2,DZIP3,RAB2B,ANKRD49,PAXBP1,DNAJC19,TMEM186,FNTA,COA1,TADA2A,FNBP4,INPP5E,UQCRFS1,PITPNB,TOMM22,RSRP1,REXO4,PTRH2,TMF1,NKAP,NAP1L1,CETN3,CHD2,NVL,PWWP2A,PEX13,ZSWIM1,MTIF2,TATDN2,AK6,SUMO2,LTB4R,RPE,MRPS9,ZNF720,UPF3B,LINS1,RABEP2,IFT20,ALKBH4,SCAF11,PYURF,HAUS1,NDUFA12,PUS10,NDUFAF5,TMEM167A,GPBP1,MRE11,PSMG2,GK5,NDUFAF7,MFF,RBM6,TOR1AIP2,TRMT13,TXNDC9,ZFAND6,PDS5B,CCDC82,SREK1IP1,ARHGAP12,PIGF,POP5,LYRM7,SMAD4,MKKS,ESD,CBX5,KIF3A,EPM2AIP1,UCKL1,FKBP3,UBE2L3,SCAMP1,ABCB6,CHD1,PSME3IP1,NAP1L4,WDR27,GTF3C4,NDUFA6,SMYD3,HECTD4,GTPBP8,PTCD1,NDUFAF2,MTRF1L,HARS2,LRFN1,KHDC4,CERS5,RSAD1,PDCD2L,PIGB,NOC3L,PNISR,GEN1,SFPQ,USP45,GLOD4,CARD8,AMZ2,NCBP2,TCEAL8,ATAD2B,ZNF10,GOPC,LRIF1,ATAT1,MORN2,DUT,RNF149,PREPL,ESCO1,ZBTB8OS,CEP63,TRMU,TMX3,UBE2B,ANGEL2,ATPSCKMT,MEIS3,PSMA2,SEM1,NAA15,CSPP1,STMP1,POC5,CHTF18,MRPL47,DARS1,DTD2,DPY19L2,UIMC1,C12orf29,SMARCE1,TAF1D,WDR12,KATNBL1,MKS1,CCDC174,MTIF3,CDK5RAP1,C7orf26,NDUFA7,SPIN3,MARCHF9,BUD23,TASP1,PIGC,COX11,GABPA,SLX4IP,PSMG1,SUGT1,MIS18A,AFTPH,GATAD1,DCAKD,RNPC3,C14orf28,ANKRD10,RPS6KB1,OBI1,UQCRB,UBXN7,CNOT4,TIMM9,TATDN1,MSL3,LSM5,TCEAL1,CCSAP,DDTL,MRPS30,SGSM3,UQCRH,SIKE1,STAU2,FBXO22,COQ4,RLIM,CCNT2,SNX14,OSBPL7,PTCD3,ORC3,LLPH,C1QBP,KAT2A,UBE2W,PHTF2,ZNF91,CHD6,RAD1,BRWD1,SNU13,ARL13B,CSTF3,RBM26,SNRPD3,XRCC2,NDUFB5,MRPL35,TUBGCP5,CCNH,PDCD2,ENTR1,FBXW7,CEBPZOS,ENDOV,BBS10,DPY30,ZFP30,BLCAP,MLH3,MRPL50,SETD6,ITPA,KANSL1L,SF3B6,ARL5A,POLI,AGFG1,LNPEP,PRPF39,ETNK1,MRPL22,KIAA0753,ANKRD46,ZFAND1,PRR36,TMEM41B,GEMIN6,E2F6,LTV1,ZC3H13,PANK3,PABIR2,HIRA,CETN2,TMEM69,FBXL20,TGIF2,MRPS22,HEXIM2,MAP3K7,CENPC,SCRN2,RBM41,NOL9,OTUD6B,ARGLU1,ANKS3,CWC27,YJEFN3,GON7,NDUFA10,NEPRO,POLR2D,SMDT1,CCNL1,TLK1,PSPH,ANKRD54,C10orf88,MARCKSL1,SUMO1,VPS33A,TFAM,C2orf49,RAD51C,PLEKHA3,ORC5,KRI1,RNF25,CELF1,TMEM60,TMEM161B,KRR1,RBM45,HSPBAP1,CRYGS,YAE1,PYGO1,DYRK4,R3HDM2,PMS1,DENND1B,PSMG4,GEMIN2,DDX31,METTL6,WDR36,TIA1,MED4,ZNF83,MOSMO,SAAL1,RETREG3,KANSL1,C5orf34,CCDC18,RFX3,ZNF8,HAUS6,PTPN2,TMEM68,ERCC3,UQCR10,SAYSD1,IPO4,EIF5B,ABHD10,DTX3,KPTN,ZMYND19,MTG2,RNF215,GIN1,FASTKD2,ZCCHC10,HELZ,NAT9,LIPT1,NDUFA5,LUC7L,NUDCD2,PTBP3,CWF19L1,COA5,DSN1,LUC7L2,BRD8,ERCC8,UBE2V1,CENPJ,C14orf93,CASP8,DPH7,SSBP1,SNX13,TEX30,TRA2A,NSMCE4A,MAPKAPK5,POLR3F,DUS1L,TPP2,REV1,HINFP,XPA,PCBD2,APBB3,NDUFAF1,CYTH2,C8orf76,APPL1,WBP1,TEPSIN,RBM33,RAD17,AVL9,ADAL,TRIT1,ZDHHC21,NOL8,PDCL,IMMP1L,TIMM21,AGAP6,BET1,MPHOSPH10,BOLA3,CFDP1,RBM39,ODF2L,CYCS,TATDN3,TNPO1,SLC25A27,PDHB,MRPS26,PGS1,MSL2,TMEM267,ZCCHC8,TBL1XR1,NRF1,RCC1L,GXYLT1,IQCB1,NSRP1,PIGL,LNPK,ERH,PPAT,RP11-523H20.5,KIAA0895L,ARV1,NDUFAF6,ATRX,MAP3K2,GPATCH2,NOL10,NDUFA4,RBM28,MOSPD1,DCAF8,C2CD5,SPRYD7,FRA10AC1,FBXO10,CAAP1,PRKRA,RUFY3,CKAP2,BCLAF1,NDUFAF4,ZFP69,NUP42,IFT27,PAN3,MED28,NARF,RTN4IP1,NUMBL,PIGM,BUD31,ZC3HC1,CLASP2,CWC22,SS18L2,SWSAP1,COPS5,DCAF16,ISCA1,SUPT7L,QSOX2,NT5C3B,MINDY2,RICTOR,TM2D3,CENPT,OSGEPL1,G6PC3,CHORDC1,CRLS1,S100PBP,RBM4,OLA1,SCLT1,DPP8,URI1,TOGARAM1,FAM217B,IMMP2L,FAM76B,ANAPC7,CCDC43,BRWD3,TRIM23,AKAP10,RBMX,RBM4B,DTWD1,EXOG,PUS3,MRPS31,TAF1C,UFD1,H2AZ2,ADNP,WDSUB1,ORC4,TEFM,SURF6,COX17,ATP5MJ,PAICS,NF1,RNASEH2B,UBL5,RPS11,TENT4B,RAB22A,MRNIP,THAP6,SS18L1,SLC35B1,ELMOD3,DDX17,E2F5,TXNL4A,C12orf66,ING4,PUS7,MAP3K13,HAUS5,SENP7,RSBN1L,MTRF1,DCAF13,FMR1,RAD52,CEP43,MRPS33,DNAJC7,THYN1,ASXL2,CTDSPL2,PRAF2,TSFM,SLC25A17,MCM8,SMC6,FBXL6,COIL,WSB1,GPALPP1,GTF2A2,MAP4K3,FAM216A,PHIP,C12orf76,FAM228B,DLG1,ABCC5,ELK4,KLC1,TIGD1,FUNDC1,GPS2,TRIM52,COA8,NOL12,CLASRP,TTC13,LMBR1,CWC25,TTC32,MTX3,TM2D1,ZMAT1,GOLGA8B,YOD1,UTP6,ATAD1,TMEM230,RPS24,STRADA,VPS13C,CBR4,ZNF18,CBWD2,NKRF,TMA7,GOLGA8A,ITGAE,TEX10,APPBP2,CYP2R1,PAM16,C1D,FKTN,SOX12,CNOT2,SETD4,CEP41,TPRKB,SPATA24,RBM48,BLMH,PIKFYVE,CHML,AARSD1,DUSP28,PUM2,SEPTIN7,RBM5,USP3,ANP32A,DHX36,NKTR,RBMS1,VPS16,BCDIN3D,TMEM11,RAD18,ZCCHC7,ZNF17,CRBN,ZNF84,PARP6,TUBD1,MED10,PDCD6,WDR33,NDUFV3,UTP15,C17orf80,TRA2B,PCMTD1,PIAS2,CRIPT,TIPIN,TSC1,NSUN3,NGLY1,FASTK,NAE1,DXO,HSPB11,USPL1,PRPF4B,LIN7C,RABL2B,TRAPPC2,KBTBD2,SNRPB2,ATF2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | TNFRSF1A,ATP6V0C,IL17RC,MAPK3,MVP,TMEM53,CTSD,CORO1C,LRP10,MYH9 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000281468 | ENST00000621046 | exon_skip_430633 | chr4:82861630-82861708 | -7.68 | -0.1129 | SEC31A | ENST00000355196,ENST00000395310,ENST00000448323 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000281468 | ENST00000621046 | exon_skip_382458 | chr3:38131595-38131638 | -4.69 | -0.2931 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000281468 | ENST00000621046 | exon_skip_111863 | chr14:23565815-23565892 | -7.87 | -0.1141 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000281468 | ENSG00000005448 | WDR54 | ACC,CHOL,LGG,PAAD,UCS | CHOL | | | ENSG00000281468 | ENSG00000105245 | NUMBL | ACC,CHOL,KIRC,KIRP,TGCT | CHOL | | | ENSG00000281468 | ENSG00000105443 | CYTH2 | ACC,CHOL,GBM,LGG,PRAD,TGCT | CHOL | | | ENSG00000281468 | ENSG00000121289 | CEP89 | ACC,CHOL,DLBC,ESCA,LAML,LUSC,MESO,PAAD,TGCT,UCS,UVM | CHOL | | | ENSG00000281468 | ENSG00000125885 | MCM8 | ACC,CHOL,COAD,KIRC,UCEC,UVM | CHOL | | | ENSG00000281468 | ENSG00000133398 | MED10 | ACC,DLBC,KICH,THYM,UVM | KICH | | | ENSG00000281468 | ENSG00000137343 | ATAT1 | ACC,CHOL,COAD,DLBC,GBM,KIRC,KIRP,LGG,PAAD,STAD,TGCT,UVM | CHOL | | | ENSG00000281468 | ENSG00000139624 | CERS5 | ACC,CHOL,COAD,KIRP,PAAD,READ,UCS | CHOL | | | ENSG00000281468 | ENSG00000141428 | C18orf21 | ACC,CHOL,KICH,KIRP,LGG,PAAD,READ,THCA,THYM,UVM | KICH | | | ENSG00000281468 | ENSG00000159239 | RP11-523H20.5 | ACC,CHOL,PAAD,SARC,UCS | CHOL | | | ENSG00000281468 | ENSG00000166012 | TAF1D | ACC,CHOL,COAD,KIRP,LAML,LGG,LUAD,PRAD,READ,SARC,STAD,UCEC,UVM | CHOL | | | ENSG00000281468 | ENSG00000166619 | BLCAP | ACC,CHOL,DLBC,KICH,THCA | KICH | | | ENSG00000281468 | ENSG00000185917 | SETD4 | ACC,CHOL,COAD,KIRC,KIRP,LAML,LGG,MESO,SKCM,STAD,UCS,UVM | CHOL | | | ENSG00000281468 | ENSG00000205208 | C4orf46 | ACC,CHOL,COAD,KIRP,UVM | CHOL | | | ENSG00000281468 | ENSG00000250067 | YJEFN3 | ACC,CHOL,KIRP,LGG,TGCT | CHOL | | | ENSG00000281468 | ENSG00000068885 | IFT80 | BRCA,CHOL,COAD,ESCA,KIRC,KIRP,LAML,LUAD,PAAD,PCPG,READ,SKCM,TGCT,UCEC | CHOL | | | ENSG00000281468 | ENSG00000132680 | KHDC4 | BRCA,CHOL,COAD,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,READ,STAD,TGCT,UCEC,UVM | CHOL | | | ENSG00000281468 | ENSG00000004777 | ARHGAP33 | CHOL,GBM,KIRP,MESO,PAAD,THYM,UCS | CHOL | | | ENSG00000281468 | ENSG00000006025 | OSBPL7 | CHOL,DLBC,GBM,KIRP,LGG | CHOL | | | ENSG00000281468 | ENSG00000011566 | MAP4K3 | CHOL,COAD,LUAD,READ,UCEC,UVM | CHOL | | | ENSG00000281468 | ENSG00000046651 | OFD1 | CHOL,COAD,KIRP,LAML,READ,UVM | CHOL | | | ENSG00000281468 | ENSG00000088356 | PDRG1 | CHOL,DLBC,KICH,PAAD,THCA | KICH | | | ENSG00000281468 | ENSG00000092978 | GPATCH2 | CHOL,COAD,KIRP,LAML,LUAD,READ,SKCM,STAD,THYM,UCEC,UCS | CHOL | | | ENSG00000281468 | ENSG00000094916 | CBX5 | CHOL,COAD,LAML,LUAD,PAAD | CHOL | | | ENSG00000281468 | ENSG00000104218 | CSPP1 | CHOL,COAD,KIRC,LAML,READ,SKCM,UVM | CHOL | | | ENSG00000281468 | ENSG00000104980 | TIMM44 | CHOL,KICH,PAAD,THCA,THYM,UVM | KICH | | | ENSG00000281468 | ENSG00000106477 | CEP41 | CHOL,COAD,ESCA,LAML,PAAD,UVM | CHOL | | | ENSG00000281468 | ENSG00000115271 | GCA | CHOL,COAD,KIRP,READ,TGCT,UVM | CHOL | | | ENSG00000281468 | ENSG00000115526 | CHST10 | CHOL,KIRP,MESO,PAAD,PRAD,UCS,UVM | CHOL | | | ENSG00000281468 | ENSG00000119640 | ACYP1 | CHOL,COAD,GBM,KIRC,KIRP,LAML,LGG,PAAD,TGCT,THCA,THYM,UVM | CHOL | | | ENSG00000281468 | ENSG00000122417 | ODF2L | CHOL,COAD,KIRC,KIRP,LAML,LUAD,READ,TGCT | CHOL | | | ENSG00000281468 | ENSG00000122970 | IFT81 | CHOL,COAD,KIRP,PAAD,READ,UVM | CHOL | | | ENSG00000281468 | ENSG00000127586 | CHTF18 | CHOL,GBM,KICH,KIRC,KIRP,LGG | CHOL | | | ENSG00000281468 | ENSG00000127922 | SEM1 | CHOL,KICH,READ,THCA,THYM,UVM | KICH | | | ENSG00000281468 | ENSG00000129534 | MIS18BP1 | CHOL,COAD,LAML,LUAD,READ | CHOL | | | ENSG00000281468 | ENSG00000130204 | TOMM40 | CHOL,KICH,PRAD,THCA,THYM | KICH | | | ENSG00000281468 | ENSG00000135845 | PIGC | CHOL,KIRP,MESO,PCPG,TGCT,THYM,UVM | CHOL | | | ENSG00000281468 | ENSG00000136108 | CKAP2 | CHOL,COAD,LAML,READ,UVM | CHOL | | | ENSG00000281468 | ENSG00000139266 | MARCHF9 | CHOL,GBM,PAAD,PCPG,PRAD,THCA | CHOL | | | ENSG00000281468 | ENSG00000142330 | CAPN10 | CHOL,KICH,KIRP,PRAD,SARC,TGCT,UCS,UVM | CHOL | | | ENSG00000281468 | ENSG00000143643 | TTC13 | CHOL,COAD,KIRP,LUAD,THYM,UVM | CHOL | | | ENSG00000281468 | ENSG00000143748 | NVL | CHOL,COAD,KIRP,LAML,PRAD,READ,THYM,UVM | CHOL | | | ENSG00000281468 | ENSG00000144445 | KANSL1L | CHOL,COAD,LAML,LUAD,READ,SKCM,UCEC,UVM | CHOL | | | ENSG00000281468 | ENSG00000147400 | CETN2 | CHOL,KIRP,PAAD,TGCT,THCA | CHOL | | | ENSG00000281468 | ENSG00000149636 | DSN1 | CHOL,KIRP,READ,THYM,UVM | CHOL | | | ENSG00000281468 | ENSG00000151849 | CENPJ | CHOL,COAD,ESCA,KIRC,KIRP,LUAD,READ,UCS,UVM | CHOL | | | ENSG00000281468 | ENSG00000151881 | TMEM267 | CHOL,COAD,KIRP,LAML,READ,STAD,THCA,UCEC,UVM | CHOL | | | ENSG00000281468 | ENSG00000156411 | ATP5MJ | CHOL,KICH,PAAD,PRAD,SARC,THCA | KICH | | | ENSG00000281468 | ENSG00000162769 | FLVCR1 | CHOL,COAD,LAML,LUAD,READ,THYM,UCS,UVM | CHOL | | | ENSG00000281468 | ENSG00000163257 | DCAF16 | CHOL,COAD,ESCA,KIRC,KIRP,LAML,LUAD,PAAD,READ,SKCM,UVM | CHOL | | | ENSG00000281468 | ENSG00000163918 | RFC4 | CHOL,KIRC,KIRP,THYM,UVM | CHOL | | | ENSG00000281468 | ENSG00000164896 | FASTK | CHOL,DLBC,KICH,LGG,PAAD,THCA,THYM | KICH | | | ENSG00000281468 | ENSG00000165724 | ZMYND19 | CHOL,KICH,KIRP,LGG,UCS | KICH | | | ENSG00000281468 | ENSG00000166532 | RIMKLB | CHOL,KIRC,KIRP,UCS,UVM | CHOL | | | ENSG00000281468 | ENSG00000167615 | LENG8 | CHOL,GBM,KIRP,LGG,UVM | CHOL | | | ENSG00000281468 | ENSG00000168096 | ANKS3 | CHOL,GBM,LGG,PRAD,THCA,UCS,UVM | CHOL | | | ENSG00000281468 | ENSG00000168393 | DTYMK | CHOL,DLBC,KIRP,PRAD,UVM | CHOL | | | ENSG00000281468 | ENSG00000171806 | METTL18 | CHOL,LAML,MESO,READ,SKCM,TGCT,THYM,UVM | CHOL | | | ENSG00000281468 | ENSG00000173681 | BCLAF3 | CHOL,COAD,KIRC,LUAD,READ,SKCM,TGCT,UCS | CHOL | | | ENSG00000281468 | ENSG00000174943 | KCTD13 | CHOL,KIRP,PAAD,PRAD,TGCT | CHOL | | | ENSG00000281468 | ENSG00000175130 | MARCKSL1 | CHOL,GBM,LGG,MESO,PRAD,TGCT | CHOL | | | ENSG00000281468 | ENSG00000177548 | RABEP2 | CHOL,DLBC,KICH,THCA,UCS | CHOL,KICH | | | ENSG00000281468 | ENSG00000178741 | COX5A | CHOL,KICH,PRAD,THCA,THYM | KICH | | | ENSG00000281468 | ENSG00000183248 | PRR36 | CHOL,GBM,PAAD,PRAD,TGCT | CHOL | | | ENSG00000281468 | ENSG00000184076 | UQCR10 | CHOL,DLBC,KICH,THCA,THYM | KICH | | | ENSG00000281468 | ENSG00000184445 | KNTC1 | CHOL,COAD,KICH,KIRC,KIRP,LUAD | CHOL,KICH | | | ENSG00000281468 | ENSG00000184752 | NDUFA12 | CHOL,KICH,THCA,THYM,UVM | KICH | | | ENSG00000281468 | ENSG00000187109 | NAP1L1 | CHOL,COAD,LAML,PAAD,READ,UVM | CHOL | | | ENSG00000281468 | ENSG00000189043 | NDUFA4 | CHOL,KICH,THCA,THYM,UVM | KICH | | | ENSG00000281468 | ENSG00000196227 | FAM217B | CHOL,COAD,KIRC,LAML,READ,SKCM,STAD,UCS,UVM | CHOL | | | ENSG00000281468 | ENSG00000198920 | KIAA0753 | CHOL,KIRP,LAML,LUAD,PAAD,READ,UVM | CHOL | | | ENSG00000281468 | ENSG00000203668 | CHML | CHOL,COAD,KIRP,READ,SKCM,UCEC,UVM | CHOL | | | ENSG00000281468 | ENSG00000204116 | CHIC1 | CHOL,COAD,ESCA,KIRC,LUAD | CHOL | | | ENSG00000281468 | ENSG00000204305 | AGER | CHOL,KIRP,PAAD,TGCT,UCS,UVM | CHOL | | | ENSG00000281468 | ENSG00000213139 | CRYGS | CHOL,DLBC,KIRP,PAAD,THYM | CHOL | | | ENSG00000281468 | ENSG00000221886 | ZBED8 | CHOL,COAD,ESCA,KIRP,LAML,LGG,PAAD,READ,SKCM,TGCT,THCA,UVM | CHOL | | | ENSG00000281468 | ENSG00000230124 | ACBD6 | CHOL,DLBC,LGG,MESO,PRAD,THYM,UVM | CHOL | | | ENSG00000281468 | ENSG00000240230 | COX19 | CHOL,DLBC,READ,THCA,UVM | CHOL | | | ENSG00000281468 | ENSG00000273899 | NOL12 | CHOL,DLBC,GBM,KICH,KIRP,PRAD,TGCT,THCA,THYM | CHOL | | | ENSG00000281468 | ENSG00000018189 | RUFY3 | COAD,KICH,KIRC,KIRP,LUAD,PAAD,UCEC,UCS,UVM | KICH | | | ENSG00000281468 | ENSG00000138495 | COX17 | KICH,PAAD,READ,THCA,THYM | KICH | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000281468 | ENST00000621046 | TMEM53 | ENSG00000126106 | ENST00000372235 | -0.1112 | 496 | - | CHOL | | ENSG00000281468 | ENST00000621046 | IL17RC | ENSG00000163702 | ENST00000383812 | -0.2647 | 48 | - | CHOL | | ENSG00000281468 | ENST00000621046 | IL17RC | ENSG00000163702 | ENST00000416074 | -0.2756 | 179 | - | CHOL | | ENSG00000281468 | ENST00000621046 | IL17RC | ENSG00000163702 | ENST00000295981 | -0.2756 | 179 | - | CHOL | | ENSG00000281468 | ENST00000621046 | IL17RC | ENSG00000163702 | ENST00000403601 | -0.2438 | 527 | - | CHOL | | ENSG00000281468 | ENST00000621046 | IL17RC | ENSG00000163702 | ENST00000424206 | -0.1185 | 1 | - | CHOL | | ENSG00000281468 | ENST00000621046 | IL17RC | ENSG00000163702 | ENST00000455057 | -0.2647 | 48 | - | CHOL | | ENSG00000281468 | ENST00000621046 | IL17RC | ENSG00000163702 | ENST00000413608 | -0.2240 | 367 | - | CHOL |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000281468.1 | ENST00000621046.2 | 214 | 266 | 910 |
|
