 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | EVPL,GIPC1,CRYBG2,GPR153,MEAK7,SERPINB1,PLIN3,TRIM7,S100A16,RAB10,TGM1,STN1,PPL,LYPD3,PERP,C1orf116,HK1,DOCK9,AHNAK2,GJB5,NIBAN2,PLEKHN1,CELSR1,RARG,C6orf132,LAD1,LRRC8A,BICDL2,TMEM79,ANXA2,TRIM29 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000280693 | ENST00000625265 | exon_skip_368285 | chr22:29329711-29329720 | -2.79 | -1.3950 | AP1B1 | ENST00000357586,ENST00000405198 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000280693 | ENSG00000092295 | TGM1 | BLCA,CESC,ESCA,HNSC,STAD | CESC | | | ENSG00000280693 | ENSG00000112378 | PERP | BLCA,CESC,ESCA,PAAD,READ,STAD | CESC,READ | | | ENSG00000280693 | ENSG00000136830 | NIBAN2 | BLCA,CESC,ESCA,HNSC,PAAD,STAD | CESC | | | ENSG00000280693 | ENSG00000137699 | TRIM29 | BLCA,CESC,ESCA,HNSC,PAAD,READ,STAD | CESC,READ | | | ENSG00000280693 | ENSG00000188112 | C6orf132 | BLCA,CESC,HNSC,PAAD,STAD | CESC | | | ENSG00000280693 | ENSG00000189280 | GJB5 | BLCA,CESC,ESCA,PAAD,READ,STAD | CESC,READ | | | ENSG00000280693 | ENSG00000084733 | RAB10 | CESC,ESCA,HNSC,STAD,UVM | CESC | | | ENSG00000280693 | ENSG00000118898 | PPL | CESC,ESCA,HNSC,PAAD,STAD | CESC | | | ENSG00000280693 | ENSG00000123159 | GIPC1 | CESC,ESCA,HNSC,PAAD,STAD | CESC | | | ENSG00000280693 | ENSG00000159166 | LAD1 | CESC,ESCA,HNSC,PAAD,STAD | CESC | | | ENSG00000280693 | ENSG00000163472 | TMEM79 | CESC,ESCA,HNSC,PAAD,STAD | CESC | | | ENSG00000280693 | ENSG00000167880 | EVPL | CESC,ESCA,HNSC,PAAD,STAD | CESC | | | ENSG00000280693 | ENSG00000176092 | CRYBG2 | CESC,ESCA,HNSC,PAAD,STAD | CESC | | | ENSG00000280693 | ENSG00000187583 | PLEKHN1 | CESC,ESCA,HNSC,PAAD,STAD | CESC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000280693.1 | ENST00000627886.1 | 80 | 964 | 1206 | | ENSG00000280693.1 | ENST00000625265.1 | 122 | 450 | 82 |
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