 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | SINHCAF,GOPC,IPO8,FAR2,SEC22B,ATM,PI4KA,EPRS1,ESCO1,GNE,GFPT1,MTMR6,TMX3,CAND1,GPATCH8,DPY19L3,ANGEL2,AP3B1,POLR1B,ANAPC1,NAA15,ROCK1,EXOC5,TIGAR,FAM214A,N4BP2,MIB1,ITFG2,ARID2,ESF1,CHM,STAM2,NCAPD2,RHNO1,FNDC3A,DTD2,ELF1,NEK4,ZC3H7A,PRPF40A,CCDC174,PIBF1,RTL6,SRP72,EIF2AK3,SENP1,BAZ2A,ZNF24,SMCR8,SLC11A2,GABPA,BRCC3,CNOT6L,HEATR1,ZBED4,GTF3C3,PBRM1,PDPK1,DCAF7,TULP3,MARCHF7,PRR14L,PPP4R3B,OBI1,KLHL28,KDM5B,PROSER1,PAN3,CEP350,UBXN7,COG6,PIGM,CCDC77,CLASP2,UBR1,CWC22,WAPL,ATP11B,FAM107B,CHD8,ACTR8,IBTK,SETD2,ATP8B1,CHORDC1,SIN3A,C9orf152,CREB1,PDCD6IP,RC3H1,DPP8,USP24,KAT6B,APAF1,SOS2,GALNT7,KDM5A,XPO4,SMG1,USP7,LYSMD3,KIF16B,CTPS2,CNOT1,SMAD2,SCYL3,ARIH1,TRAPPC11,RBM26,RB1,ATP13A3,NCBP1,C1orf131,DCP1B,PUS7L,ARID4B,ACBD3,UTP14C,NF1,ERC1,SPRTN,SMARCC1,TOP2B,MYO5C,KANSL1L,EP400,TRIM37,BLM,ETNK1,POLR2B,SEC23IP,ABHD18,VPS36,SMCHD1,KIF20B,AQR,RSBN1L,ZNF22,ZC3H13,PANK3,FOXJ3,KLF3,SLC7A1,SEC31A,M6PR,CMTR2,CNOT11,STRN,CTDSPL2,MARF1,SEC16A,GOLGA3,INO80,TNRC18,NPAT,FANCF,ABHD13,FOXM1,TUBGCP4,TRAPPC8,SEC63,TLK1,ANKRD27,TRAK2,GPALPP1,EML4,MIS18BP1,SOCS4,SLC35A3,TC2N,C2orf49,GTF2A1,ZDHHC20,TGS1,CPSF2,KMT2D,CHD9,BOD1L1,RALGAPA2,YTHDC1,RAP1GAP,PGM2L1,TMF1,SECISBP2L,ORC2,GPR180,GUF1,RNFT1,SBNO1,DENND1B,PRRC1,BAG5,NUP98,TFCP2,WDR36,TUBGCP3,PPP4R3A,ZNF720,TM9SF3,TOP1,MIER3,BTBD7,SCAF11,TM9SF2,NR2C2,UHRF1BP1L,TASOR,R3HDM1,POC1B,RUSF1,GK5,RBBP5,SMARCAD1,C12orf4,NOP2,G3BP2,STAG2,PIKFYVE,TP53BP1,EDEM3,ARHGAP12,ARID4A,PPP2R5E,HELZ,PUM2,PIK3C2B,VPS54,GLS,CDCA7,ATG2B,TIGD2,IPO5,TMEM123,SP3,DNAJC3,CEP170,AP4E1,SLC35B3,TGOLN2,SCAMP1,GSPT1,CEP192,GALK2,TMEM131,MTREX,MAPKAPK5,SLC10A7,TPP2,CRACR2A,SCNN1A,ABCE1,AKAP1,FRYL,PGGT1B,TPR,NSUN3,SPG11,FBXL14,PPM1H,APPL1,SPDEF,CUL3,ELAPOR1,BCAS1,AVL9,CFAP97,MED1,ATF2,ATAD2B | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ERC1,DCAF7,CCDC174,BRCC3,NUP98,KDM5A,SMARCA5,XPO4,ORC2,FAR2,REST,TUBGCP4,ITCH,SMG1,TULP3,EPRS,POC1B,KIF16B,UTP20,RNF219,CBL,UHRF1BP1L,DIP2B,CHD9,ATF1,CCDC77,CTPS2,FOXM1,LDOC1L,UBXN7,SPG11,RIF1,ARID2,GNE,AGO1,KIF2A,SEC31A,TUBGCP3,ACBD3,DCP1B,TMEM131,DPP8,PRRC1,DDX46,TLK1,EXOC5,WNK1,WAPL,PIK3C2B,AKAP1,ANGEL2,ELF1,MED1,CHD8,TFCP2,RHNO1,TMX3,SRP72,SLC35A3,C9orf152,RB1,C1orf131,PI4KA,CPD,APPL1,SEC22B,NEK4 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | EIF6,GPX4,RNH1,TMEM222 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000280202 | ENSG00000064787 | BCAS1 | BLCA,BRCA,CESC,COAD,LUAD,PAAD | LUAD | | | ENSG00000280202 | ENSG00000116299 | ELAPOR1 | BRCA,CESC,COAD,HNSC,LUAD,PAAD,PRAD | LUAD | HNSC | | ENSG00000280202 | ENSG00000128833 | MYO5C | BRCA,CESC,CHOL,COAD,ESCA,HNSC,PRAD | | HNSC | | ENSG00000280202 | ENSG00000065809 | FAM107B | CESC,DLBC,HNSC,LAML,THYM | | HNSC | | ENSG00000280202 | ENSG00000109586 | GALNT7 | CESC,COAD,DLBC,LAML,LUAD,PAAD,PRAD,THYM | LUAD | | | ENSG00000280202 | ENSG00000111110 | PPM1H | CESC,CHOL,HNSC,PAAD,PRAD | | HNSC | | ENSG00000280202 | ENSG00000159921 | GNE | CESC,COAD,DLBC,ESCA,HNSC,LAML,PAAD,STAD,THYM | | HNSC | | ENSG00000280202 | ENSG00000165929 | TC2N | CESC,COAD,DLBC,ESCA,HNSC,LUAD | | HNSC | | ENSG00000280202 | ENSG00000198380 | GFPT1 | CESC,DLBC,ESCA,HNSC,LUAD,PAAD | LUAD | | | ENSG00000280202 | ENSG00000138593 | SECISBP2L | COAD,DLBC,HNSC,LAML,PRAD | | HNSC |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000280202 | ENSG00000120690 | ELF1 | ENSG00000074603 | DPP8 | 5 | BRCA,CHOL,DLBC,LAML,PRAD |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000280202.1 | ENST00000624384.1 | 46 | 180 | 40 |
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