 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF30,FAM126B,MED17,FANCL,MOB1A,RBM39,ODF2L,MFSD8,DPY19L3,ANGEL2,WDR89,TMEM267,FAM214A,MYSM1,TBL1XR1,VAMP4,N4BP2L2,SMARCE1,TAF1D,KATNBL1,SLC30A7,RBM27,PIBF1,INO80D,ZNF24,BIVM,SLX4IP,IKZF5,TCAIM,SUGT1,AFTPH,RUFY3,ZFP14,CENATAC,ANKRD10,OBI1,KLHL28,MSANTD2,THOC1,PAN3,CCDC14,MED28,TRNT1,PHF12,ZBED5,MINDY2,OSGEPL1,CCNT2,CREB1,SUDS3,RC3H1,DPP8,ZNF44,FAM76B,AP1AR,TRIM13,ZNF91,YAF2,BRWD3,BRWD1,XIAP,RBM26,BCLAF3,ADNP,SCAI,DNAJB14,PUS7L,ARID4B,ZFP30,IFT80,CEP83,BBIP1,POLI,THAP9,UBN2,PRPF39,ZBTB6,GABPB1,THAP6,ABHD18,SS18L1,OFD1,TMEM41B,EPC1,SENP7,MTRF1,RAB39B,CTDSPL2,FBXL20,CEP44,CEP290,TRAPPC6B,ARGLU1,RAB2B,PAXBP1,TLK1,GMCL1,ZFP62,ANKRA2,FNBP4,PLEKHA3,C12orf76,PHIP,ORMDL1,CELF1,RSRP1,ELK4,RBM45,ORC2,PMS1,TIA1,MOSMO,ZNF720,SUPT20H,KANSL1,USP33,PPP4R2,NOL4L,TRMT13,SREK1IP1,PUM2,NKTR,LUC7L,MBTD1,ZNF43,COA5,SEPSECS,TTLL3,CRBN,EPM2AIP1,ZNF84,CCAR1,SACM1L,STXBP3,TRA2A,ZMYND8,VPS13A,ZNF69,PGGT1B,KHDC4,ATF7IP,PNISR,CCDC112,TRAPPC2,HERC4,ATF2,ATAD2B | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | RNF219,ANGEL2,RBM27,MOB1B,FAM126B,ORMDL1,THAP6,MFSD8,DPP8,TIA1,FAM63B,CEP290,KANSL1,OSGEPL1,MOB1A,PAXBP1,SACM1L,ZNF85,BRWD3,KIAA0907,XIAP,ORC2,REST,ZNF69,PGGT1B,CBFB,ABHD18,TLK1,FAM199X,NLK,GMCL1,FBXL20,ZFP30,MRPL42,SLC30A7,ZNF30,ZNF44,PMS1,ARGLU1,CELF1,MED28,BDP1,ARID4B,MDM4,HERC4,EPC1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | RNH1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000280106 | ENSG00000152520 | PAN3 | BLCA,BRCA,COAD,LAML,STAD,THYM,UCS | COAD | | | ENSG00000280106 | ENSG00000175455 | CCDC14 | BLCA,COAD,LAML,STAD,THYM | STAD | | | ENSG00000280106 | ENSG00000166012 | TAF1D | BRCA,COAD,LAML,PRAD,STAD | COAD | | | ENSG00000280106 | ENSG00000149346 | SLX4IP | COAD,PCPG,PRAD,STAD,THYM,UCS | STAD | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000280106.1 | ENST00000623602.1 | 72 | 458 | 240 |
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