 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | CDK2AP1,KRCC1,COPS7B,RNF141,HELQ,COPS2,XRN1,PRPSAP2,TXNL1,CSNK1G3,MFSD8,MDM2,CHPT1,CENPK,RB1CC1,IL6ST,CILK1,FASTKD3,IFT52,CIRBP,TAB2,ELOVL5,TRIQK,RBM7,DYNC2LI1,PPP2CA,CAPZA1,TTC31,CNOT9,CFAP20,PPID,CHM,CCDC88A,SUGP2,NCAPD2,RHNO1,RPS6KA3,VAMP4,FKRP,FKBP7,TXNDC16,TANK,RNF34,ZDHHC23,GNAQ,TMEM184C,FAM193A,NSD3,DCK,HLTF,PHF10,MAK16,SENP1,MORF4L2,GPATCH11,ZNF24,ISCU,ZFAND5,FBXL17,DNAJC1,CPLX1,WDCP,PIGX,IRAK4,BCL7A,ANKH,NBN,SLC25A40,ZFP14,RHOT1,CENATAC,TP53INP1,SAFB2,KCTD13,CCDC14,AFF4,GCLM,RNF38,CLK4,LBR,COMMD2,SLC18B1,GNG10,USP30,PARG,PBX3,FAM133B,TERF2IP,DEK,UBE2N,ZBED5,ARL1,SGCB,IBTK,SETD2,ACTR6,TBK1,TTC14,KLHL42,KNTC1,RANBP6,CREB1,MEX3C,GPRIN3,SUDS3,SMIM15,GKAP1,TRIM59,CCNL1,PPIP5K2,SCARB1,FAM104B,C19orf44,CAPN7,SARAF,STRN3,HSPA13,SMAD2,ADD3,OGT,CCNB1IP1,LIX1L,SCML1,ARIH1,IGIP,ZFP1,CBX3,PDE7A,GZF1,CARNMT1,BRSK1,PPIL4,PPTC7,RNF19A,FIG4,RAPGEF6,ARID4B,ASH1L,MPLKIP,CNST,CLOCK,NFIA,FEM1C,PTAR1,SMC2,TUT4,PSIP1,RIC8B,KATNAL1,ANAPC10,UBE3A,RPAP3,MBD2,TMEM30A,BBIP1,TRIM37,ACAD10,CLK1,ZBTB6,EDEM1,ATXN7,UBLCP1,OTULIN,HS2ST1,GABPB1,WASHC3,OFD1,VPS36,PEAK1,DRAM1,FBXO38,RBBP4,RFX7,TBCCD1,TMEM243,MAP2K4,HCFC2,FOXJ3,BMI1,SLC35A5,PURA,SLC4A1AP,CD164,MIS12,DERL2,CBX1,RSRC2,TTC21B,FEZ1,TTF1,SNX27,GET1,ARMT1,NPAT,FANCF,NAPB,RRM2B,C4orf46,C3orf62,NAA25,FGFR1,RDH14,RNF11,ZADH2,NEMP1,EML4,MIS18BP1,ARL15,SETD5,TRAM1,CDC27,SLC35A3,GTDC1,DOCK10,C9orf72,ZBED8,CHIC1,ORMDL1,CHD9,BRAF,ZNF45,YTHDC1,COQ7,MAPRE3,ACSL4,RAB5A,SEC23A,BAZ1A,C12orf73,DDX51,DONSON,NKAPD1,AGO3,SECISBP2L,C19orf12,GPN3,SLC35F5,SBNO1,SRSF2,PPP6C,POGLUT1,POGLUT3,MLLT3,TFCP2,BTF3L4,TYW3,LRRC37B,RASGEF1B,SKIL,RSRC1,TAOK3,NXF1,UBXN2A,TMBIM6,ANKRD28,SLU7,NR2C2,C2orf76,ERGIC2,BUB3,PPP4R2,BCAP29,NT5DC3,SLC25A16,SMARCAD1,HMGN3,STX6,RMI1,SCRN3,FAM114A2,PKN2,STAG2,LSM11,SLC30A6,SNX4,SSX2IP,XPO1,COG7,ZMPSTE24,CDK17,METTL4,GLS,MAN2A1,ATG2B,CIR1,DCLRE1A,USP38,ZFC3H1,ARHGAP33,NFYB,MBTD1,N4BP2L1,SP3,SEPSECS,FBXO21,AP4E1,MAN1A2,MANEA,HDAC8,KLHL23,ANKRD13C,DENR,HIPK1,TTC3,RAB3IP,SIK3,PIK3C2A,PAFAH1B1,CSNK2A2,SEPHS1,SVIP,PRXL2C,EAPP,GOLGA2,CCDC34,PGGT1B,ATF7IP,TMEM248,MAF,SHOC2,ZFP3,GLUD1,SLF1,GCA,PLBD2,RCHY1,SELENOI,JKAMP,MARCHF6,EIF4ENIF1,LONRF1,PLPP1,CUL3,MOSPD2,LTN1,RSPH3,RWDD4,ARHGEF9,SKA2,SNX25,SDHD,TMEM168,IPO8,RAB28,ATM,FAM172A,CEP20,ADO,IFT57,FLVCR1,RBBP7,DENND5A,FANCL,MED14,STK17B,NUP54,BRAP,CAND1,MED7,SMURF2,KLF7,LCORL,FBXL3,PRR3,CSNK1G1,WBP4,CEP57,PAWR,MIB1,HOOK3,FGD4,ARIH2,YWHAE,PPWD1,RC3H2,KLHL15,RELCH,RAP2C,NDRG3,RSBN1,VEZF1,GSK3B,SASS6,SLC30A7,RBM27,ATG12,NR1D2,CLASP1,EIF2AK3,FASTKD1,LAMTOR3,INO80D,KIAA1191,SAMD8,ICE2,AGK,TMEM18,ENOPH1,CRLF3,CNOT6L,BRCC3,C20orf96,PGAP1,TCAIM,MOB1B,CHP1,MAPK9,KRIT1,IPMK,PGRMC2,FAM111A,METTL21A,PARP11,DNAJC21,GCFC2,SERINC1,THOC1,ZNF25,CCDC59,UBA6,TRNT1,ACAP2,RAB36,WSB2,PHF12,FAM107B,TNKS2,SESN3,LANCL1,KIAA1143,ZZZ3,DENND6A,NETO2,HMGN2,TMED8,AP5M1,OSBPL8,PDCD6IP,SNRNP48,RC3H1,PCBP2,UBE2J1,AP1AR,ARL6IP1,TRIM13,SMG1,UFL1,SETD9,TAF7,LYSMD3,VAPA,KANSL2,PHC1,XIAP,SLC25A46,BCLAF3,APBB2,PABIR1,SLC35B4,DNAJB14,PPM1B,ZCCHC9,PUS7L,FZD3,DNAJC25,MEIS1,BBS2,PHTF1,TBC1D9,CEP83,GGNBP2,UACA,XRCC4,LIN54,NFIC,UBN2,GLT8D1,ERCC6L2,KIAA0586,RTF1,C17orf75,SATB2,LRIG2,FBXO8,FBXO3,ABHD18,ATP11C,REV3L,WDR47,SMCHD1,CREBRF,SMYD4,CEP70,SLC38A1,REEP5,ZNF41,ZC3H8,LATS1,BPNT2,SART3,DGKE,SLC35D1,TRAPPC6B,AKT3,ATE1,DZIP3,STRAP,RAB2B,TTC8,ANKRD49,PAXBP1,APPL2,EPS15,WDR7,FNTA,SGTB,GTF2A1,CDR2,INPP5E,ACACB,BOD1L1,RNF20,RAB33B,PPM1K,CPNE8,SSH2,NKAP,CETN3,NAP1L1,ERO1B,MLLT10,DENND5B,CHD2,MINDY3,MED23,TRAPPC13,SMIM14,PWWP2A,CIAO2A,DNAJC18,UCHL5,MYNN,AK6,METTL14,OTUD4,RABL3,ZNF720,CBLL1,MIER3,UPF3B,HACD1,TMPO,ZFR,PAFAH1B2,SCAF11,CCDC25,RAB11FIP3,HAUS1,NDUFA12,CCDC127,C18orf32,MICU1,NDUFAF5,TMEM167A,GPBP1,WAC,CNOT7,MRE11,DIABLO,FAM120C,NDUFAF7,RBM6,GDAP2,RAD50,TTBK2,AKTIP,CDK19,PIGK,ALDH2,SREK1IP1,CCDC82,ARHGAP12,ARID4A,LPP,RNF115,AGPS,ARPP19,SEC24A,DCTN4,LYRM7,SMAD4,AASDHPPT,TTC37,VCPIP1,CNPY4,MKKS,CBX5,BTN2A2,KIF3A,EPM2AIP1,SCAMP1,TPM4,PPP3CA,SYNGAP1,CHD1,PSME3IP1,MAML1,FBXO30,MPDZ,SFXN3,PRKAG1,BBS7,MTRF1L,BSDC1,GNPTAB,NCK1,TFDP2,DHRS7,NADK2,PIGB,PCGF6,EPB41L2,GEN1,SFPQ,SMARCA1,GLOD4,DNAJC9,UNC119B,UBE3B,CARD8,PSMD12,NUCKS1,ATAD2B,ZNF10,SINHCAF,CUL4B,GOPC,MACIR,EVI5,TBC1D15,SAR1B,CENPU,LRIF1,ABCB10,MORN2,INVS,HECTD2,PREPL,ALG2,ESCO1,MTMR10,CEP120,TMX3,KLF12,CTBP1,UBE2B,ANGEL2,WDR11,OSBPL9,PARPBP,MDM1,ROCK1,WASHC2C,POC5,INTS12,MYSM1,N4BP2,FAM214A,MED13L,FCHO2,YTHDF1,METTL15,ARID2,SEC24B,STAM2,ASPM,NUDT19,DTD2,SMARCE1,OSTM1,C12orf29,MALT1,TAF4,PICALM,CCDC174,DBR1,CCDC6,DHFR,SPIN3,MARCHF9,NME5,COX11,GABPA,SLX4IP,CRY1,RNF145,PPP1R12A,MIS18A,AFTPH,PBRM1,PSMD10,ZC4H2,DHFR2,TTC19,PTPN11,PRR14L,PPM1A,PRDX3,C14orf28,BARD1,ANKRD10,RPS6KB1,NECAP1,ATMIN,GFM2,UBXN7,LRCH3,NUSAP1,GABBR1,CNOT4,KIAA2026,MSL3,DHX57,TCEAL1,AADAT,CCSAP,PRKACA,MRPS30,CCDC50,SIKE1,RGL1,DENND4A,INIP,MPHOSPH9,CHST14,COX18,NUP37,PTCD3,ORC3,RAB1A,MAGI1,LLPH,EEA1,NRAS,CENPQ,UBE2W,NREP,PHTF2,ZNF91,TMEM192,RAD1,CHD6,TMEM209,BRWD1,ARL13B,CSTF3,BORCS7,ALDH6A1,RBMS3,FAM174A,CLDND1,ABCC4,ARMCX3,BLOC1S2,MRPL35,C12orf65,ATP13A3,SAP18,CCNH,RBM25,FBXW7,CEBPZOS,RO60,TBCK,BBS10,SYNE1,KLHL9,SP4,CLSTN3,MRPL50,RBM43,MBIP,TMTC4,KANSL1L,ARL5A,KIF21A,LNPEP,CDC23,PRPF39,ITSN2,RESF1,ETNK1,HDHD2,KIAA0753,COMMD10,ANKRD46,WDFY3,OSBPL11,ENTPD4,LIN7A,PRR36,SMC5,TMEM41B,PJA2,E2F6,BTN2A1,SUOX,EPC1,ZNF22,LCOR,PANK3,SAP30L,MAP4K5,PHAX,ACOX1,GORAB,TMEM128,SLC15A4,UBR3,MAP3K7,FBXL20,CEP44,CENPC,RBM41,TDG,NEPRO,WBP11,ABHD13,RNGTT,FBXW11,C1RL,SRPK2,TLK1,GMCL1,C10orf88,TMEM263,KRAS,PNRC1,ANKRA2,ASB7,VPS33A,UBE2G1,TFAM,C2orf49,POLK,RAD51C,PLEKHA3,NCOR1,CELF1,SCMH1,ARHGEF26,TMEM161B,PSPC1,CDC40,KRR1,RBM45,GNB4,C5orf15,HSPBAP1,WRN,PRDM2,YAE1,DYRK4,FAM149B1,R3HDM2,PMS1,NFIB,RNFT1,IKBIP,SPOP,WDR36,TIA1,ZNF83,UBL3,MOSMO,BAG4,MCUB,KANSL1,NSUN6,TMTC3,RFX3,SPCS3,ZNF8,RRAGC,MOCS2,HAUS6,SYNJ1,BMPR2,UHRF1BP1L,CDK2,BTG3,SLBP,GOLPH3,CERKL,CLGN,NAP1L3,FAM161A,KDM2B,SMARCD1,FAM13B,ABHD10,FOXA1,GRIPAP1,DTX3,ST8SIA4,CYLD,GIN1,ZCCHC10,PPP2R5E,HELZ,PARP8,CWF19L2,DYM,ELF2,NDUFA5,PDE6D,SLC2A13,MTMR9,NUDCD2,LUC7L,SPOPL,PCNA,TMEM65,ZNF43,PNN,COA5,LUC7L2,BRD8,IRF2BP2,CASP3,CCAR1,GAPVD1,SACM1L,ERCC8,PTP4A2,ARHGAP5,ARL5B,SAR1A,SCD5,SNX13,TEX30,TMEM131,NSMCE4A,USP16,TMX4,MAPKAPK5,POLR3F,KMT2A,REV1,EAF1,XPA,KLHL8,AP1S2,NANP,ETFRF1,APBB3,YPEL5,NRIP2,STX2,RAI2,RAB5B,APPL1,SOS1,RUFY2,JMY,WBP1,RBM33,RWDD2A,RAD17,NOL8,ZDHHC21,PDCL,IMMP1L,CAMKK2,KDSR,AGAP6,PELI2,RYBP,GABPB2,METAP2,USP34,MPHOSPH10,CPEB2,TMEM167B,RBM39,TAF9B,SCFD1,MSL2,MDC1,SLFN5,VSTM4,EXOC5,CAMK2D,TMEM267,JAZF1,RHOQ,C7orf31,TBL1XR1,NRF1,TIMM21,CKAP5,GXYLT1,BLOC1S6,WASHC4,SCP2,CCDC92,IQCB1,PRTFDC1,COQ5,NSRP1,TWSG1,FNDC3A,PDS5A,YIPF5,LNPK,KCTD6,ZC3H7A,RNF10,CSAD,RABGAP1L,PLA2G12A,LIMS1,ARV1,PPP1CC,ACBD5,ATRX,FEZ2,ZNF77,BRIP1,MAP3K2,LMNB1,RPRD1A,SSPN,BRI3BP,IKZF5,C2CD5,SLC25A43,ABCA5,PHYKPL,SF3B1,NHLRC2,ANKIB1,FRA10AC1,CAAP1,NUCB2,NKIRAS1,RUFY3,PRKRA,PTEN,GCH1,BCLAF1,TTC28,MAP3K4,OGA,ZFP69,MED28,LARP7,CLASP2,CWC22,ISCA1,DCAF16,ATP2B1,MORC3,SHTN1,ITPR2,MED31,EXTL2,DLG4,MINDY2,RICTOR,AP3S1,TM2D3,OSGEPL1,CRLS1,SLC41A2,C1GALT1C1,OLA1,RAB11FIP2,METTL25,SPPL3,KAT6B,APAF1,SOS2,FBXW8,TOGARAM1,FAM217B,LPGAT1,FAM76B,CCDC43,USP7,BRWD3,TRIM23,AKAP10,RBMX,RBM4B,DTWD1,VPS29,EXOG,PCNT,C21orf58,KCTD9,H2AZ2,MAP3K12,ORC4,FBXO33,NCOA5,IKZF4,TEFM,C12orf43,NF1,PRIMPOL,GID4,SPPL2A,PRDM4,C2orf69,TRIM33,RAB22A,HMGB2,LRP6,THAP6,KIDINS220,DYNC1LI1,FBXL5,SS18L1,FBXW2,DDX17,SEC62,ABL2,ING4,HAUS5,SENP7,UBTD2,RSBN1L,CHFR,FMR1,RAD52,GALNT11,CHMP2B,DNAJC7,DYRK1A,STRN,CTDSPL2,TMEM165,GNPDA2,CEP290,SDR39U1,NEK1,TRPM7,PXK,GNG2,SLC25A17,MCM8,TRAPPC8,RAD21,EID1,TRAK2,GPALPP1,FAM216A,ARSK,C16orf87,WDR41,PHIP,RSPRY1,DLG1,TMED7,USP21,ALS2,ELK4,NSD2,AP3S2,TRIM52,TWF1,NCBP3,LRRC58,ATL3,ANO6,USF3,CRYZL1,NSA2,LMBR1,BBS9,TTC32,MTX3,ZMAT1,RNF130,GOLIM4,TM9SF3,CSGALNACT2,ATAD1,HP1BP3,TMEM230,ABHD3,GIMAP6,SS18,ALPK1,TAPT1,ZFX,CBR4,NPTN,RMND5A,CDC14A,SGPP1,TEX10,APPBP2,C1D,FKTN,POC1B,ARNT,MEGF9,TOP2A,TPRKB,BLMH,PIKFYVE,CHML,PUM2,NACA,MARCHF5,USP3,ULK2,NKTR,CEP162,BCDIN3D,RNF41,ZNF17,CRBN,C3orf33,SLC30A9,TUBE1,CEP170,ZNF84,SCYL2,CCPG1,BAZ2B,CCP110,ARHGEF12,BICRAL,TUBD1,TUBA1A,WDR33,COPS8,WDR26,UTP15,C17orf80,NEDD1,TRA2B,ZDHHC6,FRYL,B4GALT6,KLHL7,PCMTD1,PIAS2,ARHGEF6,ARHGAP21,NSUN3,TAB3,CLIP1,VPS37A,PDCD7,TTC33,LIG1,ASB8,PRPF4B,LIN7C,TRAPPC2,RABL2B,FUT11,USP13,MORC4,ATF2,MRFAP1L1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | TRIM33,KDELC2,WAC,POC5,SMARCA5,C21orf58,ANKRD46,BRIP1,FAM120C,POC1B,ABCA5,COX18,STX16,CASP8AP2,ANAPC10,PDIK1L,ZFP14,LIMS1,HAUS6,ATF1,SNX27,UBXN7,CDK17,NUS1,AP5M1,ANKRD13C,NLK,FBXL7,ATG4C,CAAP1,SLC30A7,SNX4,CALCOCO2,CCNG2,HERC4,CAMLG,CCDC66,EVI5,NAP1L3,C3orf62,TMEM263,C2CD5,FAM96A,CEP78,KLHL8,CEBPZOS,FYB,PRDX3,EXOC5,CHFR,GRIPAP1,IFT81,GPATCH2L,MOB1B,FAM111A,RUFY2,KCTD3,MED21,SLC41A2,LEPROTL1,TMEM18,TERF1,RHNO1,FAM192A,SRPK2,CARD8,MIS12,RBMS3,CDADC1,BTN2A2,CCDC88A,KIDINS220,TNKS2,PCNT,SSPN,SOCS5,UBE2D1,RP2,CCSAP,CBFA2T2,ATL3,HSDL2,DRAM1,BRWD1,NANP,PPP1CC,REST,DENND6A,RILPL2,PRKRA,WSB2,TMED2,COMMD2,SETD9,ARL13B,TRIM23,ABCB10,TAF3,AK6,NCK1,GALNT11,MAK16,CHD9,SLC25A16,ACOX1,SLK,SS18,MBLAC2,MBNL1,GPRIN3,DYRK4,SLC4A1AP,PSPC1,PSMC6,KIAA1551,SESN3,FBXL20,AGO4,ATAD1,FAM133B,PLEKHA5,BBS7,SSH2,SRP14,ARMCX5,ZC3H11A,SDR39U1,PRIMPOL,DBR1,E2F6,PLBD2,C17orf75,SEPSECS,XIAP,MLLT10,MPHOSPH9,DDX46,TLK1,UBE2J1,PDCL,OSTF1,GFM2,MRPL42,ABHD13,ANGEL2,PCM1,THAP6,COMMD3,ITPR2,WDR35,CCDC6,ARHGEF9,PDS5A,SLC35A3,COG7,NFIA,ATAD5,ZBTB6,EIF2B1,CCDC174,SEC24B,PAFAH1B1,CENPU,ZMAT1,WDR60,HAUS5,RDH14,RAD52,ALPK1,GORAB,KIAA1468,FASTKD1,SMG1,BORCS7,EPC1,TWSG1,DDX17,PGAP1,FOXA1,KANSL1L,MSL2,C19orf44,SCLT1,HACD1,RCHY1,MAPRE3,ZNF720,ZNF83,KLHL7,UBE2V2,PPHLN1,RSPRY1,MAT2B,PIK3C3,SPPL2A,FAM179B,LCORL,LUC7L,GAS2L3,PAFAH1B2,TMEM131,GOLPH3,METTL21A,ECHDC1,ZNF45,GIMAP6,ABHD18,SGTB,ZEB2,EAPP,ELAC1,RAD17,RASGEF1B,MFSD8,FGD4,OSTC,CASP3,LRCH3,CCNL1,ALDH2,NKAP,TUBD1,SENP5,RBM6,H2AFV,FKTN,SLC9A6,RBM39,ZCCHC11,PEAK1,SAR1A,ZYG11B,ST8SIA4,DENR,GABPB1,BRCC3,ZCCHC10,OSGEPL1,HAUS1,CNPY4,SLC33A1,EID2,ORC2,CNST,AAED1,CBFB,IPO8,PPIL4,CMAS,PPID,C16orf87,RSBN1L,GNG10,CFAP36,MICU1,LIN54,UHRF2,CCDC109B,CDK1,HSPBAP1,CDK7,FBXO33,CBL,UHRF1BP1L,TIA1,CCNH,CCDC53,NCBP3,KPNA5,ING4,MYNN,EXTL2,TCTN2,IFNAR2,MPLKIP,CCNB1IP1,RIF1,CELF1,SMURF2,UPRT,INSIG2,APPL2,MPHOSPH10,GPN3,NDRG3,DNAJC18,NEK7,CCDC82,MPDZ,PPIL3,TMEM120B,SRSF5,USP13,CLASP1,CEP162,SIKE1,SUZ12,ARL6IP1,NDUFA5,R3HDM2,COQ7,GIT2,PDLIM5,CDC23,PHTF1,NRAS,TAF5,OSBPL11,SLC2A13,MAPK1IP1L,TFCP2,TMX3,DERL2,HECA,CMPK1,GOLGA7,C18orf25,MED28,PCBP2,FAM175B,CIRBP,MRPS36,SLFN5 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SGSM3,UBL7,PSMD2,CDC37,NUDT22,NUDT8,NAGLU,GSTZ1,ALDOA,GSTP1,VARS1,S100A2,SLC25A39,TMEM238,LLGL2,PRKD2,PHPT1,DCXR,QARS1,STX5,ALG3,ZNRD2,FLAD1,CAPNS1,WDR24,UQCRC1,PGAP6,GPS1,BOP1,GCAT,MON1A,MRPL55,CHCHD5,CYBA,SCYL1,LRP10,POLD2,PPP1CA,ADAM15,METRNL,INTS5,PKMYT1,CDC42EP2,APRT,PKP3,VPS18,GPAA1,TKT,NDUFV1,BLVRB,HMOX2,RNH1,WDR74,EIF6,LMNA,ETHE1,KIAA2013,HDHD3,HSPBP1,ZNHIT2,ADRM1,GUK1,EIF3G,CINP,STUB1,PKM,PES1,PIEZO1,UBALD1,PUF60,CLN6,HSF1,TSPO,RIN1,TBL3,NTHL1,CDC42EP5,ERCC2,SRM,NDUFS8,NSUN5,WDR46,MFSD3,RPS6KB2,MED15,FIS1,GRN,UBA52,ELMO3,GRWD1,ARL2,DBNL,NDUFB7,SLC52A2,HHLA3,NFKBIB,TXNRD2,PEX10,TMEM134,PYCR1,CDC20 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000280088 | ENST00000623268 | exon_skip_430633 | chr4:82861630-82861708 | -10.07 | -0.1549 | SEC31A | ENST00000355196,ENST00000395310,ENST00000448323 | In-frame | | ENSG00000280088 | ENST00000623268 | exon_skip_322579 | chr19:55455635-55455845 | -22.70 | -0.1305 | ISOC2 | ENST00000425675 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_256356 | ENSG00000280088.1 | chr12 | 100033603 | - | TEC | RP11-135F9.3 | ENST00000623268.1 | TEC | RP11-135F9.3-001 | | LncEditing_256357 | ENSG00000280088.1 | chr12 | 100033607 | - | TEC | RP11-135F9.3 | ENST00000623268.1 | TEC | RP11-135F9.3-001 | | LncEditing_256361 | ENSG00000280088.1 | chr12 | 100033627 | - | TEC | RP11-135F9.3 | ENST00000623268.1 | TEC | RP11-135F9.3-001 | | LncEditing_256369 | ENSG00000280088.1 | chr12 | 100033691 | - | TEC | RP11-135F9.3 | ENST00000623268.1 | TEC | RP11-135F9.3-001 | | LncEditing_256370 | ENSG00000280088.1 | chr12 | 100033695 | - | TEC | RP11-135F9.3 | ENST00000623268.1 | TEC | RP11-135F9.3-001 | | LncEditing_256389 | ENSG00000280088.1 | chr12 | 100033758 | - | TEC | RP11-135F9.3 | ENST00000623268.1 | TEC | RP11-135F9.3-001 | | LncEditing_256391 | ENSG00000280088.1 | chr12 | 100033773 | - | TEC | RP11-135F9.3 | ENST00000623268.1 | TEC | RP11-135F9.3-001 | | LncEditing_256397 | ENSG00000280088.1 | chr12 | 100033803 | - | TEC | RP11-135F9.3 | ENST00000623268.1 | TEC | RP11-135F9.3-001 | | LncEditing_256398 | ENSG00000280088.1 | chr12 | 100033804 | - | TEC | RP11-135F9.3 | ENST00000623268.1 | TEC | RP11-135F9.3-001 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000280088 | LncEditing_256357 | UCEC | chr12_100033607_- | 5.502649e+00 | 4.108942e+00 | 2.373272e+00 | 4.537810e+00 | 5.684153e-06 | 7.258226e-06 | UP | | ENSG00000280088 | LncEditing_256357 | SARC | chr12_100033607_- | 5.667022e+00 | 4.391365e+00 | 2.717971e+00 | 5.842643e+00 | 5.137914e-09 | 8.102096e-09 | UP | | ENSG00000280088 | LncEditing_256391 | SARC | chr12_100033773_- | 6.723394e+00 | 4.567989e+00 | 1.793302e+00 | 5.596065e+00 | 2.192714e-08 | 3.302495e-08 | UP | | ENSG00000280088 | LncEditing_256397 | SARC | chr12_100033803_- | 5.752224e+00 | 4.733049e+00 | 3.554293e+00 | 3.854926e+00 | 1.157647e-04 | 1.322513e-04 | UP | | ENSG00000280088 | LncEditing_256398 | SARC | chr12_100033804_- | 6.024556e+00 | 4.478405e+00 | 2.337160e+00 | 5.231588e+00 | 1.680604e-07 | 2.331364e-07 | UP | | ENSG00000280088 | LncEditing_256357 | LIHC | chr12_100033607_- | 5.933503e+00 | 4.339190e+00 | 2.215044e+00 | 8.172144e+00 | 3.029554e-16 | 7.930302e-16 | UP | | ENSG00000280088 | LncEditing_256397 | LIHC | chr12_100033803_- | 6.622532e+00 | 4.519749e+00 | 1.814420e+00 | 7.340282e+00 | 2.131437e-13 | 4.552750e-13 | UP | | ENSG00000280088 | LncEditing_256398 | LIHC | chr12_100033804_- | 6.299850e+00 | 4.401099e+00 | 1.932540e+00 | 8.006415e+00 | 1.181007e-15 | 3.003132e-15 | UP | | ENSG00000280088 | LncEditing_256357 | UCS | chr12_100033607_- | 4.681848e+00 | 2.879914e+00 | 1.426427e+00 | 3.134435e+00 | 1.721851e-03 | 3.416371e-03 | UP | | ENSG00000280088 | LncEditing_256357 | KIRC | chr12_100033607_- | 4.864016e+00 | 4.726534e+00 | 2.417490e+01 | 2.650065e+00 | 8.047637e-03 | 8.421683e-03 | UP | | ENSG00000280088 | LncEditing_256391 | KIRC | chr12_100033773_- | 5.218768e+00 | 4.724502e+00 | 6.966358e+00 | 3.780320e+00 | 1.566271e-04 | 1.776701e-04 | UP | | ENSG00000280088 | LncEditing_256397 | KIRC | chr12_100033803_- | 5.096475e+00 | 4.691025e+00 | 8.361431e+00 | 3.963888e+00 | 7.373899e-05 | 8.520695e-05 | UP | | ENSG00000280088 | LncEditing_256398 | KIRC | chr12_100033804_- | 4.963537e+00 | 4.687151e+00 | 1.209815e+01 | 3.381606e+00 | 7.206348e-04 | 7.944089e-04 | UP | | ENSG00000280088 | LncEditing_256397 | DLBC | chr12_100033803_- | 3.460540e+00 | 2.327309e+00 | 1.747231e+00 | 2.350048e+00 | 1.877097e-02 | 2.421029e-02 | UP | | ENSG00000280088 | LncEditing_256357 | GBM | chr12_100033607_- | 4.302934e+00 | 3.849843e+00 | 6.229704e+00 | 2.980693e+00 | 2.875965e-03 | 3.347706e-03 | UP | | ENSG00000280088 | LncEditing_256370 | GBM | chr12_100033695_- | 4.388012e+00 | 3.967001e+00 | 6.871962e+00 | 2.080743e+00 | 3.745740e-02 | 3.759682e-02 | UP | | ENSG00000280088 | LncEditing_256397 | GBM | chr12_100033803_- | 4.468952e+00 | 3.938984e+00 | 5.491105e+00 | 2.718871e+00 | 6.550520e-03 | 7.309477e-03 | UP | | ENSG00000280088 | LncEditing_256398 | GBM | chr12_100033804_- | 4.256691e+00 | 3.930193e+00 | 8.685662e+00 | 2.345605e+00 | 1.899625e-02 | 1.982964e-02 | UP | | ENSG00000280088 | LncEditing_256357 | MESO | chr12_100033607_- | 5.066814e+00 | 3.677319e+00 | 2.162516e+00 | 3.944407e+00 | 7.999759e-05 | 1.870620e-04 | UP | | ENSG00000280088 | LncEditing_256397 | MESO | chr12_100033803_- | 6.156032e+00 | 3.701617e+00 | 1.362686e+00 | 4.751302e+00 | 2.021106e-06 | 1.142844e-05 | UP | | ENSG00000280088 | LncEditing_256398 | MESO | chr12_100033804_- | 5.816848e+00 | 3.549760e+00 | 1.403477e+00 | 5.631731e+00 | 1.784094e-08 | 3.699021e-07 | UP | | ENSG00000280088 | LncEditing_256357 | BLCA | chr12_100033607_- | 4.352815e+00 | 2.963510e+00 | 1.802966e+00 | 6.566314e+00 | 5.157600e-11 | 8.823063e-11 | UP | | ENSG00000280088 | LncEditing_256357 | LGG | chr12_100033607_- | 5.080265e+00 | 4.317618e+00 | 4.261335e+00 | 7.031893e+00 | 2.037506e-12 | 3.457882e-12 | UP | | ENSG00000280088 | LncEditing_256391 | LGG | chr12_100033773_- | 5.409874e+00 | 4.595732e+00 | 4.249892e+00 | 6.341959e+00 | 2.268623e-10 | 3.407761e-10 | UP | | ENSG00000280088 | LncEditing_256397 | LGG | chr12_100033803_- | 5.076314e+00 | 4.691934e+00 | 8.802931e+00 | 2.730520e+00 | 6.323455e-03 | 6.584601e-03 | UP | | ENSG00000280088 | LncEditing_256398 | LGG | chr12_100033804_- | 4.998383e+00 | 4.661035e+00 | 9.919551e+00 | 3.345618e+00 | 8.209935e-04 | 8.795469e-04 | UP | | ENSG00000280088 | LncEditing_256357 | ACC | chr12_100033607_- | 7.551749e+00 | 5.847585e+00 | 2.710247e+00 | 2.896141e+00 | 3.777826e-03 | 5.343223e-03 | UP | | ENSG00000280088 | LncEditing_256370 | ACC | chr12_100033695_- | 9.363220e+00 | 6.031848e+00 | 1.576281e+00 | 3.510352e+00 | 4.475130e-04 | 9.238979e-04 | UP | | ENSG00000280088 | LncEditing_256391 | ACC | chr12_100033773_- | 8.721053e+00 | 5.983422e+00 | 1.839820e+00 | 2.988694e+00 | 2.801726e-03 | 4.075238e-03 | UP | | ENSG00000280088 | LncEditing_256397 | ACC | chr12_100033803_- | 7.759533e+00 | 6.251554e+00 | 3.207648e+00 | 2.375000e+00 | 1.754895e-02 | 1.928125e-02 | UP | | ENSG00000280088 | LncEditing_256398 | ACC | chr12_100033804_- | 7.672018e+00 | 6.072072e+00 | 2.963691e+00 | 2.633162e+00 | 8.459407e-03 | 1.028024e-02 | UP | | ENSG00000280088 | LncEditing_256357 | COAD | chr12_100033607_- | 3.277010e+00 | 2.591375e+00 | 2.952793e+00 | 4.089526e+00 | 4.322565e-05 | 4.976791e-05 | UP | | ENSG00000280088 | LncEditing_256357 | LUSC | chr12_100033607_- | 3.445179e+00 | 2.442848e+00 | 2.016068e+00 | 8.384692e+00 | 5.085882e-17 | 1.039709e-16 | UP | | ENSG00000280088 | LncEditing_256398 | LUSC | chr12_100033804_- | 3.503891e+00 | 2.526029e+00 | 2.118254e+00 | 6.066218e+00 | 1.309573e-09 | 1.671905e-09 | UP | | ENSG00000280088 | LncEditing_256357 | HNSC | chr12_100033607_- | 3.225479e+00 | 2.045968e+00 | 1.522696e+00 | 8.721179e+00 | 2.753196e-18 | 4.975655e-18 | UP | | ENSG00000280088 | LncEditing_256357 | SKCM | chr12_100033607_- | 3.120421e+00 | 1.991984e+00 | 1.544320e+00 | 8.196334e+00 | 2.478299e-16 | 3.905490e-16 | UP | | ENSG00000280088 | LncEditing_256398 | SKCM | chr12_100033804_- | 3.240291e+00 | 2.052658e+00 | 1.518303e+00 | 7.008474e+00 | 2.409321e-12 | 3.285437e-12 | UP | | ENSG00000280088 | LncEditing_256357 | LAML | chr12_100033607_- | 8.863803e+00 | 6.133422e+00 | 1.882411e+00 | 3.813416e+00 | 1.370590e-04 | 2.100097e-04 | UP | | ENSG00000280088 | LncEditing_256357 | PCPG | chr12_100033607_- | 4.686739e+00 | 4.148938e+00 | 5.686909e+00 | 2.868672e+00 | 4.121994e-03 | 4.838863e-03 | UP | | ENSG00000280088 | LncEditing_256398 | PCPG | chr12_100033804_- | 5.080601e+00 | 4.242866e+00 | 3.846743e+00 | 2.164938e+00 | 3.039243e-02 | 3.156137e-02 | UP | | ENSG00000280088 | LncEditing_256357 | KIRP | chr12_100033607_- | 5.555269e+00 | 4.570608e+00 | 3.552767e+00 | 4.133377e+00 | 3.574717e-05 | 4.734655e-05 | UP | | ENSG00000280088 | LncEditing_256398 | KIRP | chr12_100033804_- | 5.522407e+00 | 4.720809e+00 | 4.419636e+00 | 3.142367e+00 | 1.675881e-03 | 1.939357e-03 | UP | | ENSG00000280088 | LncEditing_256357 | THCA | chr12_100033607_- | 4.323219e+00 | 4.029038e+00 | 9.835700e+00 | 3.261943e+00 | 1.106514e-03 | 1.278034e-03 | UP | | ENSG00000280088 | LncEditing_256391 | THCA | chr12_100033773_- | 4.593569e+00 | 4.103651e+00 | 6.145996e+00 | 4.280845e+00 | 1.861849e-05 | 2.478409e-05 | UP | | ENSG00000280088 | LncEditing_256398 | THCA | chr12_100033804_- | 4.518940e+00 | 4.055708e+00 | 6.409008e+00 | 4.516969e+00 | 6.273094e-06 | 8.691294e-06 | UP | | ENSG00000280088 | LncEditing_256357 | THYM | chr12_100033607_- | 3.874210e+00 | 3.321042e+00 | 4.499114e+00 | 2.136196e+00 | 3.266344e-02 | 3.404536e-02 | UP | | ENSG00000280088 | LncEditing_256398 | THYM | chr12_100033804_- | 4.055639e+00 | 3.304010e+00 | 3.381680e+00 | 2.444879e+00 | 1.449009e-02 | 1.619411e-02 | UP | | ENSG00000280088 | LncEditing_256356 | OV | chr12_100033603_- | 3.811776e+00 | 3.171821e+00 | 3.771421e+00 | 2.218246e+00 | 2.653810e-02 | 2.690384e-02 | UP | | ENSG00000280088 | LncEditing_256357 | OV | chr12_100033607_- | 3.399932e+00 | 2.540103e+00 | 2.377448e+00 | 5.275886e+00 | 1.321160e-07 | 1.829528e-07 | UP | | ENSG00000280088 | LncEditing_256361 | OV | chr12_100033627_- | 3.553754e+00 | 3.049333e+00 | 4.527957e+00 | 3.485909e+00 | 4.904680e-04 | 5.430287e-04 | UP | | ENSG00000280088 | LncEditing_256369 | OV | chr12_100033691_- | 3.978529e+00 | 3.081988e+00 | 2.714635e+00 | 4.058756e+00 | 4.933475e-05 | 5.782448e-05 | UP | | ENSG00000280088 | LncEditing_256370 | OV | chr12_100033695_- | 3.842102e+00 | 2.453933e+00 | 1.546073e+00 | 1.034347e+01 | 4.480304e-25 | 3.295712e-24 | UP | | ENSG00000280088 | LncEditing_256389 | OV | chr12_100033758_- | 4.148181e+00 | 2.894560e+00 | 1.926282e+00 | 7.930056e+00 | 2.190464e-15 | 6.255069e-15 | UP | | ENSG00000280088 | LncEditing_256391 | OV | chr12_100033773_- | 3.874615e+00 | 2.636985e+00 | 1.801271e+00 | 8.788871e+00 | 1.510706e-18 | 6.013393e-18 | UP | | ENSG00000280088 | LncEditing_256397 | OV | chr12_100033803_- | 3.862172e+00 | 2.900244e+00 | 2.419912e+00 | 6.820339e+00 | 9.082599e-12 | 1.814938e-11 | UP | | ENSG00000280088 | LncEditing_256398 | OV | chr12_100033804_- | 3.817183e+00 | 2.707948e+00 | 2.018944e+00 | 8.224649e+00 | 1.957631e-16 | 6.133021e-16 | UP | | ENSG00000280088 | LncEditing_256357 | TGCT | chr12_100033607_- | 4.615963e+00 | 3.332772e+00 | 2.128070e+00 | 6.152965e+00 | 7.604758e-10 | 2.356323e-09 | UP | | ENSG00000280088 | LncEditing_256398 | TGCT | chr12_100033804_- | 4.385964e+00 | 3.574170e+00 | 3.386550e+00 | 2.438452e+00 | 1.475033e-02 | 1.535085e-02 | UP | | ENSG00000280088 | LncEditing_256357 | READ | chr12_100033607_- | 2.966121e+00 | 2.497895e+00 | 4.034459e+00 | 2.425088e+00 | 1.530470e-02 | 1.566909e-02 | UP | | ENSG00000280088 | LncEditing_256357 | LUAD | chr12_100033607_- | 3.270055e+00 | 2.826265e+00 | 4.752443e+00 | 3.911681e+00 | 9.165598e-05 | 1.025505e-04 | UP | | ENSG00000280088 | LncEditing_256357 | STAD | chr12_100033607_- | 4.624562e+00 | 3.716363e+00 | 3.170323e+00 | 2.965743e+00 | 3.019526e-03 | 3.188762e-03 | UP | | ENSG00000280088 | LncEditing_256369 | STAD | chr12_100033691_- | 5.332547e+00 | 4.323445e+00 | 3.304216e+00 | 4.408404e+00 | 1.041351e-05 | 1.237523e-05 | UP | | ENSG00000280088 | LncEditing_256370 | STAD | chr12_100033695_- | 5.040215e+00 | 3.727304e+00 | 2.296988e+00 | 6.999360e+00 | 2.571339e-12 | 4.883498e-12 | UP | | ENSG00000280088 | LncEditing_256389 | STAD | chr12_100033758_- | 5.387215e+00 | 4.084026e+00 | 2.502831e+00 | 6.033599e+00 | 1.603473e-09 | 2.429812e-09 | UP | | ENSG00000280088 | LncEditing_256391 | STAD | chr12_100033773_- | 5.024674e+00 | 3.951667e+00 | 2.885431e+00 | 5.906117e+00 | 3.502655e-09 | 5.170930e-09 | UP | | ENSG00000280088 | LncEditing_256397 | STAD | chr12_100033803_- | 4.933637e+00 | 4.228327e+00 | 4.493077e+00 | 3.673320e+00 | 2.394197e-04 | 2.661871e-04 | UP | | ENSG00000280088 | LncEditing_256398 | STAD | chr12_100033804_- | 5.020545e+00 | 4.046485e+00 | 3.213629e+00 | 5.326491e+00 | 1.001283e-07 | 1.330090e-07 | UP | | ENSG00000280088 | LncEditing_256357 | CESC | chr12_100033607_- | 4.827824e+00 | 3.065346e+00 | 1.525965e+00 | 7.885873e+00 | 3.123448e-15 | 1.405551e-14 | UP | | ENSG00000280088 | LncEditing_256391 | CESC | chr12_100033773_- | 5.463676e+00 | 3.334679e+00 | 1.403855e+00 | 5.649105e+00 | 1.612857e-08 | 2.804172e-08 | UP | | ENSG00000280088 | LncEditing_256398 | CESC | chr12_100033804_- | 5.170175e+00 | 3.255591e+00 | 1.498591e+00 | 6.707022e+00 | 1.986358e-11 | 5.023352e-11 | UP | | ENSG00000280088 | LncEditing_256357 | PRAD | chr12_100033607_- | 4.114276e+00 | 3.615009e+00 | 5.357919e+00 | 6.030787e+00 | 1.631636e-09 | 2.869931e-09 | UP | | ENSG00000280088 | LncEditing_256391 | PRAD | chr12_100033773_- | 4.383488e+00 | 3.731559e+00 | 4.304764e+00 | 5.295691e+00 | 1.185670e-07 | 1.778506e-07 | UP | | ENSG00000280088 | LncEditing_256398 | PRAD | chr12_100033804_- | 4.335853e+00 | 3.692524e+00 | 4.315765e+00 | 5.784184e+00 | 7.286501e-09 | 1.206253e-08 | UP | | ENSG00000280088 | LncEditing_256357 | BRCA | chr12_100033607_- | 5.525255e+00 | 4.364477e+00 | 2.939170e+00 | 1.142605e+01 | 3.098710e-30 | 5.806089e-30 | UP | | ENSG00000280088 | LncEditing_256370 | BRCA | chr12_100033695_- | 6.077613e+00 | 4.885300e+00 | 3.174024e+00 | 7.860750e+00 | 3.818405e-15 | 4.827792e-15 | UP | | ENSG00000280088 | LncEditing_256391 | BRCA | chr12_100033773_- | 6.224756e+00 | 4.792503e+00 | 2.650846e+00 | 9.589810e+00 | 8.824745e-22 | 1.275465e-21 | UP | | ENSG00000280088 | LncEditing_256397 | BRCA | chr12_100033803_- | 5.798468e+00 | 4.768539e+00 | 3.544537e+00 | 8.085713e+00 | 6.180142e-16 | 7.966247e-16 | UP | | ENSG00000280088 | LncEditing_256398 | BRCA | chr12_100033804_- | 5.773435e+00 | 4.506336e+00 | 2.797397e+00 | 1.190317e+01 | 1.139400e-32 | 2.333363e-32 | UP | | ENSG00000280088 | LncEditing_256357 | PAAD | chr12_100033607_- | 4.037209e+00 | 2.801907e+00 | 1.897716e+00 | 4.774728e+00 | 1.799504e-06 | 3.474905e-06 | UP | | ENSG00000280088 | LncEditing_256398 | PAAD | chr12_100033804_- | 3.843822e+00 | 3.024399e+00 | 2.891068e+00 | 3.208407e+00 | 1.334723e-03 | 1.613190e-03 | UP | | ENSG00000280088 | LncEditing_256357 | ESCA | chr12_100033607_- | 3.933387e+00 | 3.153642e+00 | 3.137223e+00 | 2.336950e+00 | 1.944180e-02 | 2.007390e-02 | UP | | ENSG00000280088 | LncEditing_256370 | ESCA | chr12_100033695_- | 4.145817e+00 | 2.999860e+00 | 2.142424e+00 | 4.881738e+00 | 1.051547e-06 | 1.685047e-06 | UP | | ENSG00000280088 | LncEditing_256389 | ESCA | chr12_100033758_- | 4.301184e+00 | 3.484827e+00 | 3.293300e+00 | 3.627907e+00 | 2.857282e-04 | 3.432013e-04 | UP | | ENSG00000280088 | LncEditing_256391 | ESCA | chr12_100033773_- | 4.186138e+00 | 3.024136e+00 | 2.131755e+00 | 4.967334e+00 | 6.787957e-07 | 1.114139e-06 | UP | | ENSG00000280088 | LncEditing_256397 | ESCA | chr12_100033803_- | 4.268105e+00 | 3.290314e+00 | 2.664034e+00 | 4.175776e+00 | 2.969724e-05 | 3.949582e-05 | UP | | ENSG00000280088 | LncEditing_256398 | ESCA | chr12_100033804_- | 4.178769e+00 | 3.214254e+00 | 2.641352e+00 | 4.074024e+00 | 4.620765e-05 | 6.008141e-05 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000280088 | LncEditing_256356 | -4.334577e-01 | 6.556626e-03 | 8.705468e-03 | | ENSG00000280088 | LncEditing_256361 | -3.354841e-01 | 5.078530e-05 | 2.623907e-04 | | ENSG00000280088 | LncEditing_256369 | -4.374975e-01 | 2.681384e-04 | 8.253337e-04 | | ENSG00000280088 | LncEditing_256389 | -3.390527e-01 | 4.593845e-04 | 1.202433e-03 | | ENSG00000280088 | LncEditing_256397 | -3.540191e-01 | 3.122140e-05 | 1.963781e-04 | | ENSG00000280088 | LncEditing_256397 | -3.145887e-01 | 7.541721e-03 | 9.509126e-03 | | ENSG00000280088 | LncEditing_256357 | -3.188329e-01 | 3.959313e-02 | 4.176857e-02 | | ENSG00000280088 | LncEditing_256397 | -5.018529e-01 | 7.089067e-04 | 2.220281e-03 | | ENSG00000280088 | LncEditing_256398 | -4.704463e-01 | 3.474777e-05 | 3.405282e-04 | | ENSG00000280088 | LncEditing_256397 | -4.612468e-01 | 4.755310e-06 | 1.536331e-05 | | ENSG00000280088 | LncEditing_256398 | -3.146728e-01 | 8.317162e-05 | 1.467734e-04 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000280088 | ENSG00000072062 | PRKACA | ACC,CHOL,DLBC,HNSC,PAAD,READ,TGCT,THYM | | CHOL | | ENSG00000280088 | ENSG00000073060 | SCARB1 | ACC,CHOL,LGG,LIHC,TGCT | | CHOL | | ENSG00000280088 | ENSG00000076555 | ACACB | ACC,CESC,CHOL,LUAD,PAAD,UCS,UVM | | CHOL | | ENSG00000280088 | ENSG00000109618 | SEPSECS | ACC,BRCA,CESC,CHOL,COAD,DLBC,HNSC,SKCM,THYM,UCS,UVM | | CHOL | | ENSG00000280088 | ENSG00000111647 | UHRF1BP1L | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,HNSC,KICH,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PRAD,READ,SARC,SKCM,STAD,TGCT,THYM,UCEC,UCS | | CHOL | | ENSG00000280088 | ENSG00000136052 | SLC41A2 | ACC,CHOL,COAD,DLBC,KIRC,READ,SKCM,UCS | | CHOL | | ENSG00000280088 | ENSG00000152620 | NADK2 | ACC,BLCA,BRCA,CHOL,HNSC,TGCT,UVM | | CHOL | | ENSG00000280088 | ENSG00000152700 | SAR1B | ACC,BRCA,CHOL,COAD,DLBC,KIRC,PAAD,SKCM,UVM | | CHOL | | ENSG00000280088 | ENSG00000154265 | ABCA5 | ACC,CESC,CHOL,COAD,LIHC,LUAD,PAAD,UVM | | CHOL | | ENSG00000280088 | ENSG00000166275 | BORCS7 | ACC,BRCA,CESC,CHOL,COAD,ESCA,LAML,OV,PAAD,READ,SKCM,STAD,THYM,UCEC,UVM | | CHOL | | ENSG00000280088 | ENSG00000111052 | LIN7A | BLCA,CHOL,KICH,THYM,UVM | | CHOL | | ENSG00000280088 | ENSG00000114790 | ARHGEF26 | BLCA,CHOL,HNSC,PAAD,STAD,UCS | | CHOL | | ENSG00000280088 | ENSG00000135093 | USP30 | BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KICH,KIRP,LGG,LIHC,MESO,PAAD,TGCT,THYM,UCEC,UCS,UVM | | CHOL | | ENSG00000280088 | ENSG00000165113 | GKAP1 | BLCA,CESC,CHOL,LIHC,PAAD,STAD,THCA,THYM,UCEC | | CHOL | | ENSG00000280088 | ENSG00000110871 | COQ5 | BRCA,CESC,CHOL,HNSC,KIRP,LAML,LGG,LIHC,PAAD,PCPG,UVM | | CHOL | | ENSG00000280088 | ENSG00000163683 | SMIM14 | BRCA,CHOL,MESO,SKCM,UCS,UVM | | CHOL | | ENSG00000280088 | ENSG00000164347 | GFM2 | BRCA,CHOL,DLBC,HNSC,KICH,PAAD,UCS,UVM | | CHOL | | ENSG00000280088 | ENSG00000139531 | SUOX | CESC,CHOL,HNSC,PAAD,TGCT | | CHOL | | ENSG00000280088 | ENSG00000172469 | MANEA | CESC,CHOL,COAD,DLBC,SKCM,UVM | | CHOL | | ENSG00000280088 | ENSG00000111271 | ACAD10 | CHOL,DLBC,HNSC,KIRP,PAAD,UCS | | CHOL | | ENSG00000280088 | ENSG00000116171 | SCP2 | CHOL,LAML,MESO,READ,SKCM,UVM | | CHOL | | ENSG00000280088 | ENSG00000139631 | CSAD | CHOL,DLBC,HNSC,KIRP,PAAD,PCPG,STAD,THYM,UVM | | CHOL | | ENSG00000280088 | ENSG00000144909 | OSBPL11 | CHOL,DLBC,READ,SKCM,UVM | | CHOL | | ENSG00000280088 | ENSG00000146476 | ARMT1 | CHOL,LAML,READ,THYM,UVM | | CHOL | | ENSG00000280088 | ENSG00000160058 | BSDC1 | CHOL,DLBC,HNSC,MESO,UVM | | CHOL | | ENSG00000280088 | ENSG00000160584 | SIK3 | CHOL,DLBC,LUAD,PAAD,THYM | | CHOL | | ENSG00000280088 | ENSG00000164172 | MOCS2 | CHOL,COAD,DLBC,PAAD,READ,SKCM,THYM,UCEC,UVM | | CHOL | | ENSG00000280088 | ENSG00000204370 | SDHD | CHOL,DLBC,LAML,READ,UVM | | CHOL |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000280088 | ENST00000623268 | PKM | ENSG00000067225 | ENST00000565154 | -0.2114 | 272 | CHOL | - | | ENSG00000280088 | ENST00000623268 | PKM | ENSG00000067225 | ENST00000568459 | -0.8300 | 683 | CHOL | - | | ENSG00000280088 | ENST00000623268 | RIN1 | ENSG00000174791 | ENST00000311320 | -0.1249 | 112 | CHOL | - | | ENSG00000280088 | ENST00000623268 | RIN1 | ENSG00000174791 | ENST00000530056 | -0.2924 | 295 | CHOL | - | | ENSG00000280088 | ENST00000623268 | METRNL | ENSG00000176845 | ENST00000570778 | -0.1259 | 175 | CHOL | - | | ENSG00000280088 | ENST00000623268 | MED15 | ENSG00000099917 | ENST00000444094 | -0.1305 | 136 | CHOL | - | | ENSG00000280088 | ENST00000623268 | MED15 | ENSG00000099917 | ENST00000382974 | -0.1476 | 265 | CHOL | - | | ENSG00000280088 | ENST00000623268 | PRKD2 | ENSG00000105287 | ENST00000600194 | -0.1053 | 310 | CHOL | - | | ENSG00000280088 | ENST00000623268 | PRKD2 | ENSG00000105287 | ENST00000595515 | -0.8800 | 1689 | CHOL | - | | ENSG00000280088 | ENST00000623268 | PRKD2 | ENSG00000105287 | ENST00000597641 | -0.1293 | 202 | CHOL | - | | ENSG00000280088 | ENST00000623268 | SLC52A2 | ENSG00000185803 | ENST00000527078 | -1.7750 | 1625 | CHOL | - | | ENSG00000280088 | ENST00000623268 | SLC52A2 | ENSG00000185803 | ENST00000532887 | -0.1015 | 118 | CHOL | - | | ENSG00000280088 | ENST00000623268 | SLC52A2 | ENSG00000185803 | ENST00000329994 | -0.1006 | 87 | CHOL | - |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000280088.1 | ENST00000623268.1 | 108 | 778 | 452 |
|
