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lncRNA: ENSG00000280079

Summary for CTC-260E6.4

Gene summary

Gene information	Ensembl ID	ENSG00000280079
	Gene symbol	CTC-260E6.4
	Gene name
	HGNC
	Entrez ID
	Gene type	TEC
	Synonyms
	UniProtAcc

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Structure and expression level for CTC-260E6.4

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000280079	1.756536e+02	2.339169e+00	3.672104e-01	6.370106e+00	1.890000e-10	3.750000e-09	UP	BLCA
ENSG00000280079	1.683374e+02	2.069839e+00	3.961259e-01	5.225205e+00	1.740000e-07	8.080000e-07	UP	UCEC
ENSG00000280079	1.316057e+02	1.879849e+00	1.277312e-01	1.471723e+01	5.000000e-49	1.030000e-47	UP	BRCA
ENSG00000280079	8.588309e+01	1.705299e+00	2.303873e-01	7.401879e+00	1.340000e-13	8.460000e-13	UP	LUAD
ENSG00000280079	1.611475e+02	1.687769e+00	3.097747e-01	5.448374e+00	5.080000e-08	4.350000e-07	UP	STAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

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lncRNA-Protein interaction for CTC-260E6.4

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000280079	ENST00000624228	CTC-260E6.4	ENSG00000132780	NASP	84.25	90.3723	P49321	Epi	NA
ENSG00000280079	ENST00000624228	CTC-260E6.4	ENSG00000169679	BUB1	70.99	91.2007	O43683	Epi	NA
ENSG00000280079	ENST00000624228	CTC-260E6.4	ENSG00000276043	UHRF1	52.65	93.3683	Q96T88	Epi	NA
ENSG00000280079	ENST00000624228	CTC-260E6.4	ENSG00000173894	CBX2	5.18	91.8341	Q14781	TF,Epi	NA
ENSG00000280079	ENST00000624228	CTC-260E6.4	ENSG00000103495	MAZ	2.42	92.322	P56270	TF,RBP,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000280079	ENST00000624228	CTC-260E6.4	ENSG00000167232	ZNF91	54.85	94.4151	Q05481	TF	NA
ENSG00000280079	ENST00000624228	CTC-260E6.4	ENSG00000198521	ZNF43	52.43	92.9388	P17038	TF	NA
ENSG00000280079	ENST00000624228	CTC-260E6.4	ENSG00000105708	ZNF14	19.76	91.7838	P17017	TF	NA
ENSG00000280079	ENST00000624228	CTC-260E6.4	ENSG00000173894	CBX2	5.18	91.1862	Q14781	TF,Epi	NA
ENSG00000280079	ENST00000624228	CTC-260E6.4	ENSG00000184635	ZNF93	5.02	90.6576	P35789	TF	NA
ENSG00000280079	ENST00000624228	CTC-260E6.4	ENSG00000105750	ZNF85	2.81	90.5604	Q03923	TF	NA
ENSG00000280079	ENST00000624228	CTC-260E6.4	ENSG00000103495	MAZ	2.42	92.3182	P56270	TF,RBP,Epi	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000280079	ENST00000624228	CTC-260E6.4	ENSG00000106344	RBM28	70.23	90.1944	Q9NW13	RBP	NA
ENSG00000280079	ENST00000624228	CTC-260E6.4	ENSG00000103495	MAZ	2.42	92.1904	P56270	TF,RBP,Epi	NA

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lncRNA-DNA interaction for CTC-260E6.4

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CTC-260E6.4

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

MVP

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for CTC-260E6.4

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000280079.1	ENST00000624228.1	84	1911	1657

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential