 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RPAP2,ARHGEF1,KRCC1,GSDMB,B3GNTL1,VAMP1,ARL16,HELQ,CPLANE1,EPOR,ERI2,OXNAD1,MFSD8,NUP43,ABHD17A,TMEM234,CENPK,WDR89,FASTKD3,CIRBP,PET100,DYNC2LI1,RNF166,MZF1,FAM24B,MCEE,TTC31,SIRT3,CNOT9,STX7,MAPK8IP3,LYSMD4,SRP19,SUGP2,VAMP4,PPP2R3B,N4BP2L2,OXSM,MKNK1,DCLRE1C,SLF2,L3HYPDH,ANKRD44,ZDHHC23,ACD,UNKL,DPP7,CD69,PHF10,PIGG,LMBR1L,GPCPD1,ZNF24,TRAPPC12,ULK3,IRAK4,STAT2,VMP1,ZFP14,CENATAC,NPEPL1,WDR5B,SNRPA,TP53INP1,ST7L,TMC8,SAFB2,KCTD13,APTX,MSANTD2,TUBGCP6,CCDC14,RSF1,FAM200A,CHKA,MYO9A,LZTFL1,ARAP2,RNF38,CLK4,DENND1C,ZUP1,FAM133B,ZBED5,EIF2B5,INPP5B,SETD2,CD37,RABGGTB,TTC14,KNTC1,RANBP6,CREB1,SLC2A11,GATD1,GKAP1,SPRN,TAZ,SPG7,EZH2,NAA80,PPIP5K2,SRSF4,GIT2,SIAH1,SMAD2,MLKL,SCYL3,DNAJC2,PPIP5K1,CLCN6,ECHDC2,OGT,RCCD1,SCML1,IGIP,RAB4B,PDE7A,COX19,CLK2,MYEF2,PPIL4,RNF19A,RAPGEF6,ILKAP,ARID4B,POLG2,DHX34,NFIA,LYPLAL1,PTAR1,TUT4,RING1,RBM15,CHKB,PSIP1,CEP152,IFT81,METTL17,ANAPC10,CPSF7,RPAP3,JAK3,MBD2,BBIP1,TRIM11,DHX58,WDR83,OSGEP,THOC2,USF1,CTC1,CLK1,ZBTB6,ATXN7,MRRF,ITGB3BP,GABPB1,RABL2A,NASP,H3-3A,RPAIN,WASHC3,MOV10,OFD1,VPS36,CARS2,INTS6,ACYP1,RFX7,SLC25A29,FCHSD1,TMEM243,IFT172,HELLS,CC2D1B,PURA,CFAP298,XPNPEP3,MIS12,MIER1,ANO8,RSRC2,CAMKMT,PFDN6,INO80E,NAPB,HERPUD2,C3orf62,LPCAT4,MAP3K14,SETD5,MIS18BP1,ZFP62,SOCS4,C9orf72,ZBED8,BIN2,CHIC1,ORMDL1,CHD9,BRAF,MIIP,YTHDC1,C18orf21,DDX51,DONSON,AGER,MBD4,AGO3,ORC2,NFKBIZ,SPOUT1,SRSF2,C1orf52,PHC3,CUL9,CDK11A,POGLUT1,BTF3L4,MRPL32,PASK,TSEN54,ATG4B,SKIL,SUPT20H,FADS3,LMNTD2,CCDC191,USP33,NXF1,DCUN1D2,PAN2,NR2C2,C6orf62,FAM229A,SLFN13,CCS,SLC25A16,DUS3L,GIGYF1,HMGN3,CD72,ZNF14,NOP2,FAM193B,PKN2,PNKP,ABCA7,TMCO6,SLC25A28,STK25,XPO1,SEC31B,CZIB,TMEM126B,METTL4,GLS,CIR1,ZFC3H1,KLHL17,NFYB,ARHGAP33,MBTD1,DMAC2L,N4BP2L1,DNASE1,SEPSECS,HEXD,ARHGEF7,HDAC8,DDX42,VCPKMT,CEP192,SCNN1D,EIF4A1,MRPS25,CCDC12,FAM204A,VPS13A,POLM,ZNF69,TDRP,DNAJC24,PGGT1B,ATF7IP,SHOC2,ERCC5,ZFP3,IKZF3,GCA,MARCHF6,SWT1,HERC4,CD2AP,IQCC,ZNF30,FAAP100,RAB28,ATM,THADA,SLC26A11,FLVCR1,PTK2B,FANCL,STK17B,NUP54,GLI4,TTC17,CDK13,LENG8,MED7,SH2B1,SMURF2,LCORL,PHKA2,PPP1R12C,C1orf159,DDX56,DGKA,PRR3,FAM98C,NICN1,CEP57,UBE2G2,HOOK3,IP6K2,PPOX,NEMP2,SPICE1,WDR53,PPWD1,RELCH,RAP2C,RSBN1,MLLT6,SASS6,RBM27,ATG12,PIBF1,AHI1,FASTKD1,INO80D,C9orf78,NHLRC3,ICE2,AGK,RORA,EIF2B4,BIVM,CRLF3,CNOT6L,C20orf96,DDX55,PHF7,RASAL3,ADPRM,ARFGAP1,MIX23,CAPN10,KRIT1,AP1G2,GLMN,FAM111A,METTL21A,PARP11,MICA,GCFC2,THOC1,ANKMY1,WDR59,ZNF25,CCDC59,UBA6,TRNT1,TMEM175,RIPK3,AKNA,ASF1A,NUMA1,PHF12,ACBD6,TNK2,INTS11,ARHGAP27,KIAA1143,RALGPS2,UGGT2,ZMYM5,DENND6A,PPP3CB,TAMM41,IFT74,NBEAL2,CD48,GDPD3,SNRNP48,RC3H1,CBLB,PCID2,SETX,ZNF44,TMEM138,TRIM13,SMG1,UFL1,FGFR1OP2,RIMKLB,LTO1,GRPEL2,TRAF1,PIDD1,METAP1D,LRRFIP2,AP5Z1,BCLAF3,SEMA4D,FNBP1,DNAJB14,CWC15,ZCCHC9,PUS7L,MED6,IFT80,CD47,CEP83,HMGB1,GGNBP2,RFC4,NAA10,FBXO44,UBN2,ANKDD1A,EXD3,METTL23,DDX6,ERCC6L2,NFKBID,C17orf75,LRIG2,P4HTM,ABHD18,PCED1A,ABTB1,NEMF,RTTN,REV3L,SLC5A3,NRBP2,SMCHD1,SLX4,CREBRF,SMYD4,IKBKB,NBPF11,AGTPBP1,DYNLT2,ACIN1,ZC3H8,DGKE,MAU2,TRAPPC6B,ENOSF1,DZIP3,RAB2B,ANKRD49,PAXBP1,LEMD2,SLC38A9,TNFRSF13C,EPS15,GANC,LY75,CCDC125,FNTA,COA1,GALT,TADA2A,FNBP4,DENND6B,TGDS,CCHCR1,PRMT7,LRRC56,INPP5E,BOD1L1,ARHGDIB,PHF11,CYB5R4,IL11RA,SGF29,SSH2,NEK8,CETN3,CHD2,USP40,MED23,PTPN6,ATG14,CLEC2D,FOXP1,PWWP2A,ZSWIM1,VPS28,FIZ1,NBPF15,PTPN22,TRPT1,MYNN,AK6,SUMO2,LTB4R,KIFC2,NIT1,HDAC1,ZNF720,HEMK1,UPF3B,LINS1,RABEP2,IFT20,OGFR,PTOV1,PCSK4,ANKRD26,GSAP,HAUS1,CLHC1,DOCK8,DDX11,PUS10,NDUFAF5,FRS3,GPBP1,C2orf68,FBXL8,MRE11,GNRH1,PSMG2,GK5,NDUFAF7,MFF,DRAM2,RBM6,TRMT13,PARVG,GDAP2,KRTCAP2,ZNF862,TTBK2,IDUA,CCDC82,SREK1IP1,ARHGAP12,ARID4A,POP5,RNF115,ATP6V0A2,SYF2,SMAD4,RASSF5,MYL5,NLRP1,EPM2AIP1,TNFRSF14,UCKL1,SYNGAP1,CHD1,PSME3IP1,WDR27,UBXN11,EME2,MTRF1L,KHDC4,DCAF15,CROCC,CERS5,RSAD1,EP400P1,PIGB,PNISR,GEN1,RP9,SFPQ,FHOD1,ACAP3,AMT,PTPN7,CEPT1,USP45,CARD8,DMXL2,ATAD2B,ZNF10,SRSF7,GOPC,LRRC14,NISCH,FAM126B,ATAT1,IFFO1,DUT,RNF149,INVS,HECTD2,PLCG1,ESCO1,ZBTB8OS,CEP63,RALGAPA1,CEP120,RASSF1,TRMU,TMX3,KLF12,CTBP1,UBE2B,ANGEL2,BICRA,POMT1,MDM1,ATXN7L2,PARP15,CSPP1,POC5,CHTF18,ADPGK,FAM214A,MYSM1,N4BP2,CEP57L1,FANCG,ARID2,FBXO41,UIMC1,TJAP1,ACADVL,SMARCE1,TAF1D,KATNBL1,MKS1,C1orf35,PLEKHH1,CEP95,CCDC174,ACAP1,MTIF3,CDK5RAP1,SPIN3,MARCHF9,TBRG1,IFT88,TBP,GABPA,SLX4IP,ZCWPW1,NPRL2,EML3,SUGT1,KLHDC4,KLHDC1,AFTPH,GATAD1,CCNL2,DCAKD,EFCAB7,BNIP2,FBXO46,DMPK,CLK3,RNPC3,C14orf28,ANKRD10,BARD1,RPS6KB1,TENT4A,OBI1,INCA1,VPS9D1,LRCH3,GABBR1,CHTOP,TFAP4,DOP1A,N6AMT1,BTBD19,KIAA2026,MSL3,KANSL3,RFNG,MED25,DDTL,SGSM3,TP53I13,MC1R,C1orf174,TYK2,COQ4,KYAT1,CCNT2,OSBPL7,PTCD3,SP100,SEPTIN1,KAT2A,PHTF2,ZNF91,ACBD4,AGO2,BRWD1,SLC17A9,CSTF3,RBM26,CLDND1,PLA2G6,NAPEPLD,RNPS1,PURB,ZBTB3,CCNH,ZFX,RBM25,ENTR1,KIF27,C1orf131,CYBC1,FBXW7,CEBPZOS,TBCK,RHPN1,ENDOV,BBS10,ZFP30,MLH3,SP4,MRPL50,CLDN15,SETD6,KANSL1L,PTS,LNPEP,PRPF39,ITSN2,ARMH1,RESF1,ETNK1,ZNF34,ERMARD,KIAA0753,ENTPD4,TRIM45,ZFAND1,NDOR1,SMC5,TMEM41B,SRRM2,BTN2A1,MIB2,WHRN,EPC1,TENM1,LCOR,PHF1,DDHD1,PABIR2,ZNF717,GORAB,HDAC10,MAP3K7,FBXL20,HEXIM2,CEP44,CENPC,SCRN2,HSF4,RBM41,ARGLU1,ANKS3,YJEFN3,NEPRO,NOXA1,LIG4,CCNL1,TLK1,RGL3,C10orf88,TMEM263,ANKRA2,SGSM2,RASSF7,C2orf49,POLK,PLEKHA3,VMAC,TAF10,KRI1,RNF25,CELF1,TMEM161B,EPG5,MICALL2,RBM45,HSPBAP1,CRYGS,PRDM2,YAE1,FAM149B1,R3HDM2,HLA-DOB,CENPS,LBHD1,PMS1,OGG1,FAM160A2,RPS6,EGFL8,RNFT1,DENND1B,PSMG4,ZGPAT,PPM1M,PBX4,TIA1,MED4,ZNF83,PPP4R3A,MOSMO,TMUB2,KANSL1,NSUN6,SP110,RFX3,UBA3,ZNF8,ABCD4,HAUS6,PTPN2,STARD4,DPH1,BRAT1,CERKL,PELP1,ERCC3,MEN1,NEIL1,FAM161A,SZT2,POLE,FAM13B,VPS33B,DDX5,GRIPAP1,ZMYND19,CYLD,GIN1,PLCB2,ZCCHC10,PARP8,HELZ,NAT9,UBA7,LIPT1,CWF19L2,STK4,ELF2,NDUFA5,PROCA1,CRAMP1,LUC7L,ARL6IP6,ZNF43,WDR6,PNN,COA5,LUC7L2,BRD8,CCAR1,MAP2K7,CENPJ,C14orf93,MROH1,CASP8,LRSAM1,DPH7,POU6F1,TRA2A,NSMCE4A,USP16,MAPKAPK5,POLR3F,CEP131,KMT2A,DUS1L,TPP2,REV1,NEURL4,PNPLA7,HINFP,XPA,PCBD2,NR2C1,GPR132,CRTC2,AMY2B,APBB3,NRIP2,CNTROB,STX2,CYTH2,FAM135A,BDH2,RUFY2,WBP1,RBM33,RAD17,TRIT1,NADSYN1,ZDHHC21,NOL8,MOK,IMMP1L,CFAP44,SRRT,AGAP6,RBM19,WRAP73,GABPB2,MPHOSPH10,MOB1A,ADAMTS10,GTPBP2,TRIM66,RBM39,ODF2L,SLC26A6,GPATCH8,SLC25A27,PGS1,MSL2,IRF3,ZCCHC8,TMEM267,TBL1XR1,NRF1,TMEM44,RRNAD1,ZXDC,IQCB1,NSRP1,INTS3,TRIM39,PIGL,NEK3,KCTD6,ZC3H7A,GBA2,CSAD,RABGAP1L,KIAA0895L,RINL,ARV1,TBC1D10C,NDUFAF6,ATRX,ATAD3B,MAP3K2,SAMD10,GPATCH2,CD52,MUTYH,RBM28,DCAF8,OBSL1,IKZF5,C2CD5,MFSD10,STAG3L5P-PVRIG2P-PILRB,PHYKPL,ABCA5,TMEM259,CD1D,SF3B1,POFUT2,NHLRC2,FRA10AC1,CACTIN,ZBTB5,CAAP1,RUFY3,LIN37,BCLAF1,OGA,ZFP69,PYCR2,NUP42,IFT27,RECQL5,PAN3,PHKG2,NARF,BCS1L,MED28,SARS2,LARP7,NIPSNAP3B,ARHGAP4,DMTF1,SELL,CWC22,COPS5,SS18L2,TBC1D17,DCAF16,GOLGA1,SUPT7L,MORC3,QSOX2,ARHGAP9,DLG4,MINDY2,RICTOR,CENPT,OSGEPL1,CYTH1,CHORDC1,S100PBP,RBM4,RAB11FIP2,SCLT1,EMB,MTG1,TOGARAM1,FAM76B,POGZ,ANAPC7,GTPBP3,CXCR4,YAF2,ARRDC2,BRWD3,RBMX,RBM4B,DTWD1,RNF217,CYTIP,EXOG,MRPS31,ANAPC2,C21orf58,TAF1C,ADAT2,MAP3K12,FBXO33,ORC4,SCAI,GABRE,MYO19,TEFM,TRAPPC14,FUBP1,SLC38A6,RNASEH2B,PRIMPOL,CAPN15,THAP9,HMGB2,EZH1,MRNIP,MPV17,THAP6,SS18L1,ELMOD3,DDX17,E2F5,GSTM2,ING4,SLC7A6,HAUS5,SENP7,CHFR,MTRF1,RSBN1L,FMR1,RAD52,CEP43,HDAC7,THYN1,DYRK1A,CTDSPL2,MARF1,CEP290,FBXL12,SDR39U1,PGGHG,TELO2,CDAN1,SMC6,FBXL6,WSB1,GPALPP1,AUP1,PHIP,C12orf76,ANO9,FAM228B,CBLN3,WASHC1,USP21,ABCC5,ELK4,KLC1,TIGD1,E2F4,GPS2,TRIM52,NCBP3,NOL12,USF3,CRYZL1,CLASRP,DFFB,CCDC93,TTC13,MBD6,CWC25,STK36,TTC32,MICAL1,MTX3,ZMAT1,GOLGA8B,YOD1,UTP6,HP1BP3,ALPK1,ACP6,STRADA,VPS13C,TAPT1,NLRC3,SMG9,CBR4,ZNF18,NKRF,EIF2D,TANK,TMA7,GOLGA8A,ITGAE,TEX10,CYP2R1,PAM16,PPHLN1,TCIRG1,FKTN,SETD4,CNOT2,ALG9,TPRKB,RBM48,TSNAX,PIKFYVE,AARSD1,SPAG16,GMEB2,DUSP28,PUM2,TYW5,SEPTIN7,RBM5,USP3,NKTR,CEP162,YPEL3,RNASEH2C,IKZF2,ZFP28,RAD18,ZCCHC7,TTC9C,C19orf71,IL2RG,ZNF17,TTLL3,CRBN,TUBE1,SLC25A45,ZNF84,BAZ2B,RXRB,CCP110,PARP6,RCSD1,TUBD1,WDR33,P3H1,NMRK1,TRA2B,TFB1M,ZDHHC6,PCMTD1,PIAS2,LRP5L,ASXL1,TSC1,SH3GLB2,DENND4B,NSUN3,NGLY1,FASTK,SIRT6,MAN2C1,DXO,HSPB11,USPL1,USP20,ANKRD13D,LIG1,MRPL38,NELFA,PRPF4B,LIN7C,CCDC57,TET2,RABL2B,TRAPPC2,KBTBD2,SIRT7,ATF2,MRFAP1L1,STK38 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | MRPL37,OGDH,EIF3L,RAB5C,PSMD2,ATP6V0D1,HSPA8,SNX12,LRP10,CLPTM1,GBA,SF3A1,EIF4G1,TMED1,P4HB,TMBIM6,RPN2,CLTC,NOMO2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000280077 | ENST00000623489 | exon_skip_1234 | chr1:11658532-11658628 | -13.72 | -0.2407 | FBXO44 | ENST00000251547,ENST00000376770 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000280077 | ENST00000623489 | exon_skip_7523 | chr1:78660553-78660654 | -8.93 | -0.1207 | IFI44 | ENST00000370747 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_66482 | chr11:126274926-126275021 | -12.32 | -0.1711 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_382458 | chr3:38131595-38131638 | -6.93 | -0.1777 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_499567 | chr9:128325142-128325239 | -9.66 | -0.1098 | COQ4 | ENST00000300452 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_95407 | chr12:95040475-95040597 | -11.91 | -0.1435 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_111863 | chr14:23565815-23565892 | -10.41 | -0.1652 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_309204 | chr19:49181348-49181461 | -11.60 | -0.1074 | TRPM4 | ENST00000252826 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_340759 | chr2:85552415-85552567 | -15.35 | -0.1301 | GGCX | ENST00000233838 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_370518 | chr22:50247691-50247776 | -8.93 | -0.1089 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_372019 | chr3:15241452-15241588 | -12.83 | -0.1060 | CAPN7 | ENST00000253693 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_374497 | chr3:49999439-49999513 | -8.83 | -0.1299 | RBM6 | ENST00000266022 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_374551 | chr3:50100531-50100605 | -7.76 | -0.1158 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_384420 | chr3:49812647-49812738 | -13.71 | -0.1853 | UBA7 | ENST00000333486 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_436035 | chr5:79656957-79657001 | -5.93 | -0.2372 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_477099 | chr7:92509328-92509411 | -6.85 | -0.2210 | PEX1 | ENST00000248633 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_4796 | chr1:41007448-41007545 | -11.11 | -0.1543 | CTPS1 | ENST00000372616,ENST00000372621 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_9446 | chr1:147270931-147271005 | -7.99 | -0.1949 | CHD1L | ENST00000369258 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_53559 | chr10:101793912-101793998 | -10.99 | -0.2498 | OGA | ENST00000361464 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_74009 | chr11:64773429-64773505 | -11.97 | -0.2064 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_92074 | chr12:50142052-50142110 | -6.89 | -0.1406 | CERS5 | ENST00000317551 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_114365 | chr14:74290026-74290118 | -9.83 | -0.2457 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_133217 | chr16:8635038-8635079 | -8.61 | -0.2609 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_290158 | chr17:42953723-42953778 | -6.20 | -0.2214 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_319223 | chr19:43526200-43526349 | -15.95 | -0.1147 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_364741 | chr22:31603743-31603819 | -10.86 | -0.1468 | SFI1 | ENST00000400288 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_365497 | chr22:38067703-38067770 | -10.20 | -0.1821 | PICK1 | ENST00000356976,ENST00000404072 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_433210 | chr4:177436275-177436351 | -7.18 | -0.1381 | AGA | ENST00000264595 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_444499 | chr5:138164086-138164133 | -12.97 | -0.3603 | BRD8 | ENST00000254900 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_470226 | chr7:103307595-103307708 | -13.46 | -0.1235 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_509943 | chrX:47175018-47175092 | -8.40 | -0.1183 | RBM10 | ENST00000377604 | Frame-shift | | ENSG00000280077 | ENST00000623489 | exon_skip_48296 | chr10:26755654-26755741 | -11.42 | -0.1730 | ABI1 | ENST00000376142 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000280077 | ENSG00000007545 | CRAMP1 | ACC,CHOL,DLBC,KIRC,KIRP,LGG,PAAD,SARC,UCEC | CHOL | | | ENSG00000280077 | ENSG00000056558 | TRAF1 | ACC,CHOL,KIRC,KIRP,PAAD,TGCT,UCS | CHOL | | | ENSG00000280077 | ENSG00000102977 | ACD | ACC,CHOL,KIRP,LGG,PAAD,THCA | CHOL | | | ENSG00000280077 | ENSG00000105771 | SMG9 | ACC,CHOL,KIRC,KIRP,LGG,THCA | CHOL | | | ENSG00000280077 | ENSG00000119640 | ACYP1 | ACC,BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LAML,LGG,OV,PAAD,SKCM,STAD,TGCT,THCA,THYM,UCEC | CHOL | | | ENSG00000280077 | ENSG00000127586 | CHTF18 | ACC,CHOL,GBM,KIRC,KIRP,LGG,SARC,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000132680 | KHDC4 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,OV,PAAD,SARC,SKCM,STAD,THCA,THYM,UCEC,UCS | CHOL | | | ENSG00000280077 | ENSG00000142330 | CAPN10 | ACC,BLCA,CHOL,DLBC,KIRC,KIRP,LGG,PAAD,SARC,SKCM,THCA,THYM,UCS | CHOL | | | ENSG00000280077 | ENSG00000148341 | SH3GLB2 | ACC,BLCA,CESC,CHOL,KIRC,KIRP,PAAD,SARC,SKCM,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000151849 | CENPJ | ACC,BLCA,BRCA,CESC,CHOL,COAD,KIRC,KIRP,OV,SARC,THYM,UCEC | CHOL | | | ENSG00000280077 | ENSG00000158062 | UBXN11 | ACC,BLCA,CESC,CHOL,DLBC,ESCA,KIRC,KIRP,PAAD,SKCM,TGCT,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000163918 | RFC4 | ACC,CHOL,GBM,LGG,THCA | CHOL | | | ENSG00000280077 | ENSG00000166012 | TAF1D | ACC,BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LAML,LGG,PAAD,SKCM,STAD,THCA,THYM,UCEC | CHOL | | | ENSG00000280077 | ENSG00000167615 | LENG8 | ACC,BLCA,BRCA,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,SARC,SKCM,STAD,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000167702 | KIFC2 | ACC,CHOL,KIRC,KIRP,OV,PAAD,SARC,SKCM,TGCT,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000168096 | ANKS3 | ACC,BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LGG,PAAD,SARC,SKCM,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000176454 | LPCAT4 | ACC,CHOL,KIRC,KIRP,THCA | CHOL | | | ENSG00000280077 | ENSG00000177917 | ARL6IP6 | ACC,CHOL,KIRP,LGG,UCS | CHOL | | | ENSG00000280077 | ENSG00000197283 | SYNGAP1 | ACC,CHOL,ESCA,KIRC,KIRP,SARC,THYM,UCS | CHOL | | | ENSG00000280077 | ENSG00000197948 | FCHSD1 | ACC,BLCA,BRCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,PAAD,SKCM,TGCT,THCA,THYM,UCS | CHOL | | | ENSG00000280077 | ENSG00000204130 | RUFY2 | ACC,BLCA,BRCA,CHOL,COAD,KIRC,KIRP,LAML,OV,SKCM,STAD,UCEC,UCS | CHOL | | | ENSG00000280077 | ENSG00000204305 | AGER | ACC,BRCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,PAAD,SARC,SKCM,STAD,TGCT,THYM,UCS | CHOL | | | ENSG00000280077 | ENSG00000214021 | TTLL3 | ACC,BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS | CHOL | | | ENSG00000280077 | ENSG00000215440 | NPEPL1 | ACC,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LGG,PAAD,SKCM,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000221829 | FANCG | ACC,CHOL,KIRP,LGG,THCA | CHOL | | | ENSG00000280077 | ENSG00000230124 | ACBD6 | ACC,CHOL,LAML,LGG,SARC,THCA | CHOL | | | ENSG00000280077 | ENSG00000250067 | YJEFN3 | ACC,BLCA,CHOL,DLBC,KIRC,KIRP,LGG,PAAD,SARC,UCS | CHOL | | | ENSG00000280077 | ENSG00000273899 | NOL12 | ACC,BLCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,PAAD,THCA,THYM | CHOL | | | ENSG00000280077 | ENSG00000275023 | MLLT6 | ACC,CHOL,KIRC,KIRP,PAAD,SARC,SKCM,TGCT,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000006025 | OSBPL7 | BLCA,CESC,CHOL,DLBC,GBM,KIRC,KIRP,LGG,PAAD,SARC,SKCM,TGCT,THCA,THYM,UCS | CHOL | | | ENSG00000280077 | ENSG00000046651 | OFD1 | BLCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LAML,LGG,OV,PAAD,SARC,SKCM,STAD,THCA,THYM,UCEC | CHOL | | | ENSG00000280077 | ENSG00000068885 | IFT80 | BLCA,BRCA,CESC,CHOL,COAD,DLBC,GBM,KIRC,KIRP,LGG,OV,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS | CHOL | | | ENSG00000280077 | ENSG00000115687 | PASK | BLCA,BRCA,CHOL,KIRP,OV,PAAD,SKCM,UCS | CHOL | | | ENSG00000280077 | ENSG00000119969 | HELLS | BLCA,CESC,CHOL,COAD,OV,SARC,THYM,UCEC | CHOL | | | ENSG00000280077 | ENSG00000122417 | ODF2L | BLCA,BRCA,CHOL,COAD,ESCA,KIRC,KIRP,LAML,PAAD,SKCM,STAD,TGCT,THCA,THYM,UCEC | CHOL | | | ENSG00000280077 | ENSG00000127415 | IDUA | BLCA,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LGG,PAAD,THCA | CHOL | | | ENSG00000280077 | ENSG00000143643 | TTC13 | BLCA,CHOL,COAD,DLBC,KIRC,KIRP,PAAD,SKCM,TGCT,THYM,UCEC | CHOL | | | ENSG00000280077 | ENSG00000152457 | DCLRE1C | BLCA,CHOL,COAD,ESCA,KIRC,KIRP,PAAD,UCEC,UCS | CHOL | | | ENSG00000280077 | ENSG00000160298 | C21orf58 | BLCA,CESC,CHOL,DLBC,ESCA,GBM,LGG,OV,SKCM,THYM | CHOL | | | ENSG00000280077 | ENSG00000161328 | LRRC56 | BLCA,CHOL,KIRP,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000173681 | BCLAF3 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LAML,LGG,PAAD,SKCM,STAD,THCA,THYM,UCEC | CHOL | | | ENSG00000280077 | ENSG00000174943 | KCTD13 | BLCA,CHOL,DLBC,KIRC,KIRP,PAAD,SARC,TGCT,THCA | CHOL | | | ENSG00000280077 | ENSG00000183397 | C19orf71 | BLCA,CHOL,PAAD,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000184445 | KNTC1 | BLCA,CESC,CHOL,COAD,GBM,KIRC,KIRP,LGG,PAAD,THYM,UCEC | CHOL | | | ENSG00000280077 | ENSG00000185917 | SETD4 | BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,SARC,SKCM,STAD,THCA,UCEC,UCS | CHOL | | | ENSG00000280077 | ENSG00000197774 | EME2 | BLCA,BRCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,PAAD,SARC,SKCM,TGCT,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000198707 | CEP290 | BLCA,BRCA,CHOL,COAD,ESCA,KIRC,KIRP,LAML,LGG,SKCM,STAD,UCEC | CHOL | | | ENSG00000280077 | ENSG00000213139 | CRYGS | BLCA,CESC,CHOL,DLBC,KIRP,PAAD,TGCT | CHOL | | | ENSG00000280077 | ENSG00000258839 | MC1R | BLCA,CHOL,KIRP,LGG,PAAD,THCA | CHOL | | | ENSG00000280077 | ENSG00000113441 | LNPEP | BRCA,CHOL,COAD,SKCM,UCEC | CHOL | | | ENSG00000280077 | ENSG00000125633 | CCDC93 | BRCA,CHOL,COAD,GBM,KIRC,LGG,UCEC,UCS | CHOL | | | ENSG00000280077 | ENSG00000138834 | MAPK8IP3 | BRCA,CHOL,DLBC,ESCA,KIRC,KIRP,PAAD,SKCM,STAD,THCA,THYM | CHOL | | | ENSG00000280077 | ENSG00000144134 | RABL2A | BRCA,CESC,CHOL,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,SARC,THCA,THYM,UCS | CHOL | | | ENSG00000280077 | ENSG00000183484 | GPR132 | BRCA,CHOL,KIRP,PAAD,SKCM | CHOL | | | ENSG00000280077 | ENSG00000204116 | CHIC1 | BRCA,CHOL,COAD,SKCM,THYM,UCEC,UCS | CHOL | | | ENSG00000280077 | ENSG00000004777 | ARHGAP33 | CESC,CHOL,DLBC,ESCA,KIRC,KIRP,PAAD,SKCM,THCA,THYM,UCS | CHOL | | | ENSG00000280077 | ENSG00000123219 | CENPK | CESC,CHOL,COAD,GBM,SKCM,THYM,UCEC | CHOL | | | ENSG00000280077 | ENSG00000147437 | GNRH1 | CESC,CHOL,KIRC,KIRP,PAAD,THYM | CHOL | | | ENSG00000280077 | ENSG00000154760 | SLFN13 | CESC,CHOL,COAD,KIRC,KIRP,PAAD,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000164877 | MICALL2 | CESC,CHOL,KIRC,KIRP,PAAD,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000185101 | ANO9 | CESC,CHOL,KIRC,KIRP,PAAD,TGCT | CHOL | | | ENSG00000280077 | ENSG00000213185 | FAM24B | CESC,CHOL,DLBC,ESCA,PAAD,STAD,THCA,THYM | CHOL | | | ENSG00000280077 | ENSG00000061273 | HDAC7 | CHOL,KIRC,KIRP,PAAD,THCA,THYM,UCS | CHOL | | | ENSG00000280077 | ENSG00000065357 | DGKA | CHOL,DLBC,KIRC,KIRP,PAAD,SKCM,TGCT,THYM | CHOL | | | ENSG00000280077 | ENSG00000076928 | ARHGEF1 | CHOL,KIRC,KIRP,LGG,PAAD,SKCM,TGCT,THCA,THYM | CHOL | | | ENSG00000280077 | ENSG00000077463 | SIRT6 | CHOL,KIRP,LGG,PAAD,THCA | CHOL | | | ENSG00000280077 | ENSG00000081320 | STK17B | CHOL,COAD,PAAD,SKCM,TGCT,THYM,UCEC | CHOL | | | ENSG00000280077 | ENSG00000089820 | ARHGAP4 | CHOL,DLBC,KIRC,PAAD,SKCM,UCS | CHOL | | | ENSG00000280077 | ENSG00000095397 | WHRN | CHOL,ESCA,KIRC,KIRP,UCS | CHOL | | | ENSG00000280077 | ENSG00000104936 | DMPK | CHOL,KIRC,KIRP,LGG,THCA | CHOL | | | ENSG00000280077 | ENSG00000105486 | LIG1 | CHOL,KIRP,LGG,PAAD,SARC,THCA | CHOL | | | ENSG00000280077 | ENSG00000105639 | JAK3 | CHOL,KIRP,PAAD,SKCM,TGCT | CHOL | | | ENSG00000280077 | ENSG00000106462 | EZH2 | CHOL,KIRC,KIRP,LGG,PAAD | CHOL | | | ENSG00000280077 | ENSG00000115271 | GCA | CHOL,COAD,ESCA,SKCM,UCS | CHOL | | | ENSG00000280077 | ENSG00000115419 | GLS | CHOL,COAD,LAML,SKCM,THYM,UCEC | CHOL | | | ENSG00000280077 | ENSG00000129465 | RIPK3 | CHOL,KIRC,PAAD,TGCT,THYM | CHOL | | | ENSG00000280077 | ENSG00000129534 | MIS18BP1 | CHOL,COAD,KIRC,SKCM,STAD,UCEC | CHOL | | | ENSG00000280077 | ENSG00000130590 | SAMD10 | CHOL,KIRC,KIRP,LGG,PAAD,SARC,TGCT,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000135596 | MICAL1 | CHOL,GBM,KIRC,KIRP,LGG,PAAD,TGCT,THYM | CHOL | | | ENSG00000280077 | ENSG00000135723 | FHOD1 | CHOL,KIRP,PAAD,THCA,THYM | CHOL | | | ENSG00000280077 | ENSG00000139266 | MARCHF9 | CHOL,DLBC,KIRP,THCA,THYM,UCS | CHOL | | | ENSG00000280077 | ENSG00000139624 | CERS5 | CHOL,COAD,ESCA,KIRC,KIRP,LGG,STAD,TGCT,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000142303 | ADAMTS10 | CHOL,KIRC,KIRP,LGG,SARC,THCA,THYM | CHOL | | | ENSG00000280077 | ENSG00000143258 | USP21 | CHOL,DLBC,KIRC,KIRP,LGG,PAAD,THCA | CHOL | | | ENSG00000280077 | ENSG00000147168 | IL2RG | CHOL,PAAD,SKCM,TGCT,THYM | CHOL | | | ENSG00000280077 | ENSG00000159314 | ARHGAP27 | CHOL,KIRC,KIRP,PAAD,SKCM,THYM,UCS | CHOL | | | ENSG00000280077 | ENSG00000160796 | NBEAL2 | CHOL,KIRC,KIRP,PAAD,UCS | CHOL | | | ENSG00000280077 | ENSG00000163013 | FBXO41 | CHOL,DLBC,KIRP,PAAD,THYM,UCS | CHOL | | | ENSG00000280077 | ENSG00000164104 | HMGB2 | CHOL,LGG,PAAD,SKCM,THCA,THYM | CHOL | | | ENSG00000280077 | ENSG00000166839 | ANKDD1A | CHOL,LGG,PAAD,SKCM,TGCT,UCS | CHOL | | | ENSG00000280077 | ENSG00000168404 | MLKL | CHOL,KIRC,KIRP,PAAD,SKCM | CHOL | | | ENSG00000280077 | ENSG00000170571 | EMB | CHOL,COAD,ESCA,PAAD,SKCM | CHOL | | | ENSG00000280077 | ENSG00000177548 | RABEP2 | CHOL,DLBC,LGG,PAAD,TGCT,THCA | CHOL | | | ENSG00000280077 | ENSG00000179832 | MROH1 | CHOL,KIRC,KIRP,PAAD,UCS | CHOL | | | ENSG00000280077 | ENSG00000182173 | TSEN54 | CHOL,GBM,KIRC,KIRP,LGG,THCA | CHOL | | | ENSG00000280077 | ENSG00000187764 | SEMA4D | CHOL,PAAD,SKCM,THYM,UCS | CHOL | | | ENSG00000280077 | ENSG00000205268 | PDE7A | CHOL,COAD,KIRC,LGG,PAAD,SKCM,STAD,THYM | CHOL | | | ENSG00000280077 | ENSG00000205593 | DENND6B | CHOL,KIRC,KIRP,TGCT,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000240230 | COX19 | CHOL,DLBC,KIRC,KIRP,PAAD,THCA,UCS | CHOL | | | ENSG00000280077 | ENSG00000278259 | MYO19 | CHOL,GBM,KIRC,KIRP,LGG | CHOL | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000280077 | ENST00000623489 | TMBIM6 | ENSG00000139644 | ENST00000552370 | -0.1448 | 1714 | - | CHOL |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000280077.1 | ENST00000623489.1 | 266 | 439 | 1239 |
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