Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000279861

Summary for RP11-43N16.4

Gene summary

Gene information	Ensembl ID	ENSG00000279861
	Gene symbol	RP11-43N16.4
	Gene name
	HGNC
	Entrez ID
	Gene type	TEC
	Synonyms
	UniProtAcc

Top

Structure and expression level for RP11-43N16.4

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000279861	5.889948e-01	2.078658e-05	CHOL	1.040566e-04

Top

lncRNA-Protein interaction for RP11-43N16.4

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

Top

lncRNA-DNA interaction for RP11-43N16.4

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

LRCH4,SRRT,AGAP6,ARHGEF1,VAMP1,RBM39,MYPOP,ABHD17A,LENG8,BICRA,SH2B1,PHKA2,PPP1R12C,C1orf159,ZCCHC8,FAM98C,MZF1,CHTF18,AKAP8,MAPK8IP3,FBXO41,KAT8,SUGP2,N4BP2L2,PPWD1,DMTF1,PIGL,CSAD,KIAA0895L,LMBR1L,TBRG1,MUTYH,ULK3,PHYKPL,KMT2B,TMEM259,CCNL2,CAPN10,AP1G2,LIN37,CENATAC,NPEPL1,CLK3,OGA,ANKRD10,SAFB2,PPP1R37,KCTD13,MSANTD2,NAPA,THOC1,TUBGCP6,PAN3,CCDC14,PHKG2,TMEM175,CLK4,TBC1D17,INTS11,MED25,CENPT,TYK2,MC1R,CCNT2,OSBPL7,MTG1,TAZ,SPG7,KAT2A,OGT,ANAPC2,PLA2G6,TAF1C,BCLAF3,CLK2,RBM25,TRAPPC14,DHX34,CHKB,METTL17,CAPN15,TRIM11,OSGEP,CLK1,PRPF39,NFKBID,CXXC1,MRNIP,SS18L1,NDOR1,OFD1,DDX17,SRRM2,MIB2,HAUS5,FCHSD1,CHFR,RAD52,REC8,ACIN1,HDAC10,ANO8,RSRC2,FBXL12,HSF4,INO80E,ENOSF1,MAU2,ARGLU1,ANKS3,NOXA1,YJEFN3,ANKRD49,PAXBP1,CCNL1,SGSM2,RSRP1,USP21,CHD2,GPS2,AGER,TRIM52,NOL12,CLASRP,SRSF2,MBD6,CDK11A,ZGPAT,STK36,TTC32,PBX4,KIFC2,ZMAT1,ZNF83,ATG4B,GOLGA8B,SUPT20H,NSUN6,NXF1,DCUN1D2,PTOV1,PCSK4,PAN2,GOLGA8A,FBXL8,ZSWIM8,NEIL1,RBM6,SZT2,GIGYF1,ZNF862,FAM193B,GRIPAP1,KPTN,PNKP,ABCA7,DUSP28,RBM5,NKTR,LUC7L,KLHL17,ARHGAP33,C19orf71,TTLL3,SYNGAP1,PARP6,EIF4A1,TRA2A,UBXN11,EME2,KHDC4,NR2C1,DCAF15,CROCC,APBB3,SH3GLB2,DENND4B,USF2,PNISR,MAN2C1,ACAP3,USPL1,ANKRD13D,WBP1,TRAPPC2,TEPSIN,RBM33,SIRT7,ZNF10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for RP11-43N16.4

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000279861	ENST00000624088	exon_skip_41813	chr10:68337857-68337996	-18.38	-0.1436	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000279861	ENST00000624088	exon_skip_382458	chr3:38131595-38131638	-9.06	-1.0067	ACAA1	ENST00000333167	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for RP11-43N16.4

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000279861.1	ENST00000624088.1	69	47	256

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential