 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ARHGEF17,ARHGEF1,KRCC1,GSDMB,B3GNTL1,VAMP1,HELQ,PUM1,CPLANE1,EPOR,STRN4,ERI2,TBC1D24,MFSD8,GBF1,ABHD17A,GLYR1,DNAJC27,WDFY1,NBPF9,MAST3,SPATA13,BRD1,CIRBP,SOWAHC,RNF166,MZF1,DHX38,SIRT3,CNOT9,COL4A5,MAPK8IP3,LYSMD4,SUGP2,VAMP4,FKRP,UBQLN4,N4BP2L2,MKNK1,SLF2,L3HYPDH,TANK,RNF34,DMTF1,TMEM184C,FAM193A,NSD3,UNKL,PIGG,LMBR1L,GPCPD1,ZNF24,TRAPPC12,PTPRS,WDCP,ULK3,KMT2B,IRAK4,VPS39,STAT2,VMP1,ZFP14,CENATAC,NPEPL1,WDR5B,TP53INP1,TMC8,SAFB2,PPP1R37,KCTD13,KDM5B,MSANTD2,TUBGCP6,MREG,CCDC14,RSF1,SMARCC2,FAM200A,CHKA,ACAD8,SSH3,EVPL,PIAS3,CLK4,MAEA,USP30,PARG,ZBED5,EIF2B5,RPAP1,ATXN7L3,INPP5B,SETD2,TTC14,TRIP10,KNTC1,SIN3A,SLC37A1,CEP72,RANBP6,CREB1,SLC2A11,HMGXB3,SPG7,TAZ,KDM5A,NAA80,EXOC8,PPIP5K2,C19orf44,SRSF4,FBXO34,PPP1R13L,SMAD2,SCYL3,DNAJC2,PPIP5K1,CLCN6,ECHDC2,RCCD1,OGT,NOD1,ARIH1,C20orf194,ZFP1,BAIAP2L2,IGIP,CPSF1,PDE7A,COX19,CLK2,MYEF2,BRSK1,FAM219B,PCMTD1,ARID4B,ASH1L,POLG2,DHX34,PTAR1,RING1,TUT4,CHKB,CEP152,IFT81,METTL17,FAN1,RIC8B,UBE3A,MGRN1,CPSF7,JAK3,BBIP1,TRIM37,TRIM11,DHX58,MORC2,SLC12A9,ARAP3,OSGEP,THOC2,CTC1,ACAD10,CLK1,ZBTB6,ATXN7,MRRF,GABPB1,NASP,TMEM79,LLGL2,GTF3C2,RABL2A,MOV10,RPAIN,AKT1,OFD1,ACYP1,CCDC9B,FBXO38,RFX7,ENO3,SLC25A29,TMEM39A,FCHSD1,IFT172,CC2D1B,TBX6,XPNPEP3,MIS12,NCOA6,ANO8,RSRC2,TTC21B,PGAP3,NPAT,NAPB,TRMU,AP1G1,ANKRD11,USP46,ARID1A,NAA25,LPCAT4,ZADH2,APBA3,NEMP1,SYVN1,USP35,SETD5,MIS18BP1,ZFP62,PRKX,GON4L,SOCS4,MDN1,C9orf72,ZBED8,ANAPC5,ORMDL1,CHD9,ZNF45,BRAF,RALGAPA2,YTHDC1,LPAR2,SH2D3A,COQ6,BACH1,DDX51,DONSON,AGER,TMEM185B,SECISBP2L,ORC2,NFKBIZ,SPOUT1,SBNO1,SRSF2,CUL9,CDK11A,TECPR1,PASK,PLD2,LRRC37B,ZZEF1,DHX35,SUPT5H,ABHD16A,ATG4B,SUPT20H,LMNTD2,CCDC191,USP33,ADHFE1,NXF1,DCUN1D2,TSSK6,RNF111,EIF2B1,HIF1AN,TNKS,NR2C2,PAN2,SIX5,FAM229A,SLFN13,R3HDM1,PPP1R9B,SLC25A16,MOAP1,DUS3L,SMARCAD1,GIGYF1,PARP10,UNC13D,STX6,KHNYN,HMGN3,MAN2B1,ZNF14,MBTPS1,FAM193B,PKN2,BRD2,ABCA7,TMCO6,SLC25A28,NOL3,STK25,COG7,SEC31B,BTBD9,PIK3C2B,METTL4,IPO9,ATG2B,ZFC3H1,MTMR4,KLHL17,ARHGAP33,MBTD1,DMAC2L,ATXN2L,SP3,DNASE1,SEPSECS,IFT122,ARHGEF7,TNPO2,SDE2,GAS8,DVL2,DDX42,HIPK1,CEP192,TMEM50B,TTC3,SCNN1D,ARHGEF11,EIF4A1,CCDC24,PIK3C2A,MRPS25,DHX16,LYSMD1,AHDC1,VPS13A,POLM,ZNF69,SHROOM1,TDRP,TRIM27,GOLGA2,ATF7IP,KIF12,BRD4,ERCC5,ZFP3,GCA,RCHY1,MARCHF6,SWT1,BRD3,EIF4ENIF1,LTN1,HERC4,RNF214,CASTOR3,ZNF30,AMMECR1L,TMEM168,FAAP100,ATM,FAM172A,ARHGEF2,SLC26A11,MBOAT1,FANCL,ILF3,PLEKHG5,NUP54,TTC17,CAPN12,CDK13,DPY19L3,SMG7,LENG8,SH2B1,KLF7,CDC42SE1,RANBP3,STK11,PHKA2,PPP1R12C,C1orf159,DGKA,TRAF6,FAM98C,NICN1,CSNK1G1,CEP57,CNTNAP1,UBE2G2,MIB1,INPPL1,CEP68,IP6K2,PPOX,FAM168B,ARIH2,CABIN1,SH3D21,SPICE1,PLEKHG2,PPWD1,RELCH,ARMCX4,RSBN1,MLLT6,PRPF40A,ATG12,PIBF1,AHI1,ZNF70,CLASP1,FASTKD1,INO80D,NHLRC3,AGK,ICE2,SH3YL1,TRIM65,BIVM,ATP8B2,KDM5C,SYNJ1,C20orf96,ADGRA3,DDX55,COG8,CAPN10,KRIT1,BICDL2,AP1G2,GLMN,FAM111A,BANP,PARP11,MICA,GCFC2,THOC1,PROSER1,ANKMY1,CCDC40,WDR59,ZNF25,MAML3,TMEM175,RIPK3,UBR1,NUMA1,PHF12,CHD8,ACBD6,TNK2,TNKS2,ARHGAP27,RALGPS2,ODR4,REXO1,ZMYM5,UGGT2,C2CD3,IFT140,UBR4,TAMM41,ZBED3,NBEAL2,CSNK1D,GDPD3,PDCD6IP,DRC3,SNRNP48,CACNB1,CBLB,XPO4,PCID2,ZNF44,LY6G5B,CDK20,TMEM138,TRIM13,SMG1,ALKBH6,FGFR1OP2,TAF7,PKD1,RIMKLB,LTO1,TRAF1,KANSL2,PHC1,METAP1D,RAI1,NSD1,AP5Z1,BCLAF3,MFSD9,DZIP1L,DNAJB14,PUS7L,SLC26A1,UTP14C,BBS2,ALS2CL,IFT80,ABRAXAS1,ZCCHC14,CEP83,NEK9,FBXO44,EP400,DOCK6,UBN2,ANKDD1A,EXD3,DDX6,NFKBID,LRIG2,PPP1R13B,PARP2,CABLES2,P4HTM,PATZ1,SEC23IP,ABHD18,SESTD1,PCED1A,ABTB1,RTTN,NRBP2,IWS1,POLR2A,SLX4,CREBRF,TNFRSF10B,EHMT2,MECP2,AFDN,ANGEL1,SMYD4,MTA3,IKBKB,NBPF11,LMF1,UBAP2L,DYNLT2,BRF1,ACIN1,ZC3H8,LATS1,TNRC18,SART3,ENOSF1,MAU2,DZIP3,RAB2B,TTC8,ANKRD49,PAXBP1,LEMD2,PGBD1,APPL2,GANC,FNTA,MOGS,GALT,KCTD18,TADA2A,FNBP4,MMS19,CEP85,DENND6B,LRRC56,INPP5E,KMT2D,BOD1L1,PHF11,PEX1,RSRP1,IL11RA,SSH2,NEK8,MLLT10,CHD2,TSTD2,RNF31,FLCN,MINDY3,USP40,MED23,TRAPPC13,NVL,CRACR2B,CLEC2D,ATG14,ZSWIM1,NBPF15,MYNN,LTB4R,ATP13A1,KIFC2,TSNARE1,ANKLE2,NIT1,ODF3B,TUBGCP3,NSUN2,ZNF720,HEMK1,MIER3,UPF3B,LINS1,HERC1,ZFR,BTBD7,RABEP2,IFT20,SBNO2,OGFR,PCSK4,SRRT,ANKRD26,SCAF11,GSAP,RAB11FIP3,CLHC1,STAT6,DDX11,BCL2L11,C18orf32,FRS3,GPBP1,C2orf68,FBXL8,WAC,MRE11,ZSWIM8,AP4M1,PLXNB3,GK5,NDUFAF7,NOL4L,RBM6,EHMT1,TRMT13,SLC23A2,ZNF862,AKTIP,PDS5B,TP53BP1,SBF1,IDUA,CCDC82,ARHGAP12,ARID4A,NT5C2,LRBA,VPS54,DCTN4,AP3D1,SMAD4,ELP1,PAXIP1,GDI1,NLRP1,FAM222B,NOM1,BTN2A2,KIF3A,GGT7,RYK,TNFRSF14,UCKL1,EPM2AIP1,TYW1,ABCB6,FAM168A,TIMM23B,SYNGAP1,XAF1,PSME3IP1,CHD1,TCF25,MAML1,WDR27,HECTD4,EME2,YY1AP1,EXOC7,ANKFY1,HARS2,KHDC4,DCAF15,CROCC,PLXNB1,CERS5,TPR,RSAD1,EP400P1,PIGB,MIDEAS,USF2,GATAD1,PPP1R26,HPS4,MPP3,PNISR,GEN1,SFPQ,TPCN1,MIER2,PLPP5,TMEM63A,ARHGEF25,AMT,ACAP3,LRRC27,FHOD1,USP45,DNAJC9,UBE3B,CARD8,ELL,DMXL2,ATAD2B,ZNF10,SRSF7,GOPC,LRRC14,KCNC3,NISCH,CLCN7,FAM126B,FBXO9,IFFO1,ATAT1,PREPL,HECTD2,PLCG1,RCBTB1,ESCO1,CEP120,PBX2,MYO9B,TMX3,NAGK,CDC42BPA,MEGF6,CTBP1,ANGEL2,BICRA,WDR11,OSBPL9,POMT1,MDM1,ATXN7L2,ZNF598,POC5,CHTF18,ADPGK,FAM214A,MYSM1,KDM3B,IQCE,MED13L,AKAP8,ITPRID2,NLGN2,CEP250,ARID2,FBXO41,TTC5,STAM2,MSTO1,TJAP1,ACADVL,RNF44,MALT1,TAF1D,KATNBL1,MKS1,TAF4,PLEKHH1,CEP95,DZANK1,CCDC174,PIP4P1,SPIN3,TBRG1,IFT88,ATF6B,COX11,TBP,SLX4IP,GABPA,HEATR1,EML3,RDH13,GTF3C3,MIS18A,KLHDC1,AFTPH,CCNL2,TET3,DHFR2,EFCAB7,PDPK1,FBXO46,DMPK,PRR14L,CLK3,RNPC3,C14orf28,ANKRD10,TENT4A,INCA1,RGS11,VPS9D1,UBXN7,LRCH3,MNT,GABBR1,CCDC77,CNOT4,CHTOP,SON,TFAP4,BTBD19,N6AMT1,DOP1A,ZDHHC8,KIAA2026,KANSL3,DHX57,KMT2C,MED25,DDTL,CCDC50,SGSM3,EHBP1L1,SCAF4,PHF8,MC1R,VILL,C1orf174,CCDC32,TYK2,ZMIZ1,KLHL29,CCNT2,HECTD1,OSBPL7,PTCD3,SCRIB,PI4KB,EDC4,KAT2A,PHTF2,RNF123,NFRKB,ZNF91,CHD6,DNM2,ACBD4,AGO2,BRWD1,SLC17A9,U2AF2,DDI2,CHD3,BMPR1A,RBM26,TRAPPC11,PLA2G6,CSNK1E,NAPEPLD,ATG16L1,CAMK2G,NR2F6,PURB,ZBTB3,TUBGCP5,RBM25,ENTR1,SLC27A3,FBXW7,RO60,ARAP1,TBCK,RHPN1,BBS10,COL9A2,VN1R1,ZFP30,KLHL9,MLH3,CLDN15,SETD6,RBM43,TMTC4,KANSL1L,POLI,UBR5,SEMA6C,PRPF39,RESF1,ETNK1,ITSN2,TRAM1L1,ERMARD,HDHD2,KIAA0753,ZC3H12A,EPS8L1,WDFY3,TRIM45,ENTPD4,SGSH,PRR36,NDOR1,SRRM2,HEATR5B,GABRE,BTN2A1,WHRN,EPC1,SUOX,TENM1,PARP3,LCOR,ZC3H13,PHF1,DDHD1,PABIR2,MAP4K5,CMTR2,GORAB,HDAC10,FBXL20,HEXIM2,TGIF2,MAP3K7,CEP44,CENPC,HSF4,RBM41,PROSER3,HERC2,ARGLU1,ANKS3,NOXA1,PRMT9,YJEFN3,NEPRO,LIG4,CCNL1,SRPK2,ANKRD27,RGL3,TLK1,C10orf88,USP19,ANKRA2,ASB7,SGSM2,C2orf49,POMT2,POLK,WIZ,VMAC,KRI1,STK38,CELF1,TMEM161B,EPG5,MADD,ZSWIM4,RBM45,MICALL2,HSPBAP1,CRYGS,NFXL1,HLCS,YAE1,ACTR1B,FAM149B1,R3HDM2,LBHD1,PMS1,QRICH1,FAM160A2,EGFL8,KIF7,ZGPAT,ADCY6,PBX4,TIA1,HOOK2,RANBP10,PPP4R3A,MOSMO,ZNF83,HCN3,TMUB2,KANSL1,NSUN6,ZNF3,TBC1D20,ZMYM3,ZNF8,DNMT3A,ABCD4,PCGF2,PTPN2,TRIM46,TBC1D8,DPH1,SNRNP200,BMPR2,DMWD,CAD,ERCC3,DGKQ,POLG,PLAG1,RUSF1,NEIL1,KDM2B,FAM161A,SZT2,TNIP2,POLE,FAM13B,MYO18A,ADAMTS13,VPS33B,DDX5,GRIPAP1,DTX3,RNF215,FASTKD2,PLCB2,PALM3,HELZ,UBA7,NAT9,PARP8,LIPT1,MINDY1,STK4,ELF2,CRAMP1,LUC7L,EPS15L1,SPOPL,ZNF43,LRCH4,WDR6,PNN,COA5,ACY1,DSN1,LUC7L2,BRD8,IRF2BP2,CCAR1,STXBP3,MAP2K7,ARHGAP5,DGKD,CENPJ,C14orf93,BBS4,MROH1,CASP8,LRSAM1,CBX8,TNS2,POU6F1,TMEM131,AREL1,TRA2A,RNF126,NSMCE4A,SH3BP5L,MAPKAPK5,KMT2A,TPP2,REV1,NEURL4,COLGALT1,PNPLA7,HINFP,PCBD2,NR2C1,SCML1,BRD9,CRTC2,AMY2B,APBB3,FBXL14,CNTROB,STX2,CYTH2,BDH2,DYNC1LI2,SOS1,MED24,RUFY2,WBP1,TEPSIN,RBM33,RWDD2A,HCFC1,NOL8,MED1,TRIT1,NADSYN1,ZDHHC21,WDR37,MOK,CFAP44,NUP133,ME3,AGAP6,RBM19,WRAP73,RELL2,IQCN,FPGT,DSTYK,GABPB2,GEMIN8,TAF6L,AP3M1,ADAMTS10,GTPBP2,TRIM66,MAPKBP1,SLC29A2,RBM39,ODF2L,TADA1,TNFAIP2,SLC26A6,GPATCH8,SLC25A27,PGS1,MSL2,POLR1B,MDC1,TMEM267,ZCCHC8,NRF1,FAM120B,TMEM44,COQ8B,ITFG2,RNF4,RRNAD1,KAT7,ZNF2,ZXDC,IQCB1,WDR91,GAK,KAT8,INTS3,TRIM39,FNDC3A,PIGL,NEK3,ZC3H7A,BIN3,AASDH,GBA2,CSAD,PHLDB1,KIAA0895L,RINL,RILPL1,BAZ2A,ZNF77,ABCA2,SAMD10,RPRD1A,GPATCH2,MUTYH,PIEZO1,ZNF74,RBM28,OBSL1,DCAF8,IKZF5,C2CD5,LAMA5,MFSD10,PHYKPL,TMEM259,SF3B1,POFUT2,NHLRC2,CACTIN,FRA10AC1,ZBTB5,RUFY3,LIN37,BCLAF1,OGA,ZFP69,ZFYVE26,PYCR2,GORASP1,NUP42,IFT27,PAN3,CEP350,BCS1L,MED28,NUMBL,RRP1B,KMT2E,AKT2,CWC22,LRRC75B,C2orf42,MAPK12,DCAF16,GOLGA1,ZC3H4,NUMB,SUPT7L,MORC3,QSOX2,HID1,RALGDS,DLG4,EXTL2,RICTOR,CENPT,OSGEPL1,CYTH1,PACS2,CUL7,S100PBP,RBM4,TRIM3,SHC2,CALCOCO1,ANKRD52,SPPL3,MTG1,USP24,KAT6B,URI1,WDR55,FBXW8,TOGARAM1,FAM76B,POGZ,ANAPC7,ARRDC2,BRWD3,TRIM23,RBMX,RBM4B,TSC2,EXOG,MRPS31,PCNT,ANAPC2,C21orf58,TAF1C,RBM14,ADNP,ADAT2,MAP3K12,NCOA5,TMEM143,MBD1,IKZF4,MYO19,TEFM,ARID1B,TRAPPC14,AAAS,PIP4K2B,DCAF5,NF1,GCN1,RHBDF1,CAPN15,CNKSR1,THAP9,SMPD4,TRIM33,CXXC1,WDR20,LRP6,EZH1,MRNIP,THAP6,KIDINS220,DHX15,ELMOD3,DDX17,TRPM4,E2F5,TRIM62,GSTM2,ABL2,ING4,SLC7A6,MED15,HAUS5,CHFR,AQR,MTRF1,SENP7,RAD52,CEP43,URB1,HDAC7,ARVCF,DYRK1A,ASXL2,NINL,MARF1,SEC16A,GNPDA2,INO80,CEP290,FBXL12,SDR39U1,TRIP11,TRPM7,PGGHG,MCM8,TELO2,CDAN1,FBXL6,COIL,WSB1,GPALPP1,MAP4K3,STK19,PHIP,C12orf76,PFAS,ANO9,POLL,VPS52,FAM228B,CBLN3,USP21,ALS2,ABCC5,HEXIM1,ELK4,KLC1,TIGD1,CNNM3,NSD2,GPS2,TRIM52,NCBP3,PCBP4,PPP1R21,DEPDC5,NOL12,CRYZL1,PCP2,LPIN2,CLASRP,FBXO11,CCDC93,DFFB,DEDD,TTC13,MBD6,CWC25,SNX1,STK36,CPT1B,SALL2,TTC32,MICAL1,BAHCC1,BRPF3,CUL4A,MTX3,SIPA1L3,FBXO31,ZMAT1,GOLGA8B,SPATA20,YOD1,MCM3AP,CSGALNACT2,HP1BP3,SS18,ALPK1,STRADA,VPS13C,ZFX,CCDC88C,ZNF18,LZTS2,DIDO1,GOLGA8A,CYP2R1,PAM16,RABGAP1,PPHLN1,FKTN,SETD4,ARNT,CNOT2,SPIRE2,AZIN2,CREBBP,CARD19,RBM48,TP53BP2,PSMC3IP,PIKFYVE,AARSD1,GMEB2,DUSP28,PUM2,RBM5,USP3,AXIN1,NKTR,CEP162,TRIP12,VPS16,ZFP28,C19orf71,ZNF17,SRCAP,DOT1L,CRBN,TTLL3,RNF169,SLC25A45,ZNF84,LDB1,BAZ2B,RXRB,PARP6,BICRAL,TUBD1,CACNB3,ISYNA1,WDR33,OBSCN,WDR26,MTMR11,NUDT17,C17orf80,ZDHHC6,PRPF40B,FRYL,PLEKHN1,PIAS2,KATNIP,JMJD1C,LRP5L,ASXL1,TSC1,QRICH2,RCBTB2,SH3GLB2,DENND4B,SPG11,TEP1,RPRD2,MAN2C1,DXO,PDCD7,USPL1,USP20,TMC6,DPP9,LZTR1,ANKRD13D,ASB8,WHAMM,MRPL38,LIG1,NELFA,PRPF4B,TET2,RABL2B,TRAPPC2,PIP5K1A,SIRT7,ATF2,MRFAP1L1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | MDH2,COX8A,PRDX1,NDUFA8,LSM10,PRR13,MRPL37,SMIM12,NDUFA6,NDUFB11,COX17,BTD,EMC3,RPA3,DBI,DDT,HSPA8,SDHB | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000279716 | ENST00000624704 | exon_skip_110809 | chr14:105449358-105449409 | -16.19 | -0.4261 | MTA1 | ENST00000331320 | In-frame | | ENSG00000279716 | ENST00000624704 | exon_skip_294281 | chr17:81192735-81192843 | -26.03 | -0.2577 | CEP131 | ENST00000269392 | In-frame | | ENSG00000279716 | ENST00000624704 | exon_skip_305660 | chr19:35269802-35270003 | -39.82 | -0.2473 | USF2 | ENST00000222305 | In-frame | | ENSG00000279716 | ENST00000624704 | exon_skip_1234 | chr1:11658532-11658628 | -20.19 | -0.2269 | FBXO44 | ENST00000251547,ENST00000376770 | In-frame | | ENSG00000279716 | ENST00000624704 | exon_skip_89611 | chr12:6678662-6678710 | -10.53 | -0.2393 | ZNF384 | ENST00000361959,ENST00000396801 | In-frame | | ENSG00000279716 | ENST00000624704 | exon_skip_145209 | chr16:67178009-67178107 | -24.96 | -0.3671 | KIAA0895L | ENST00000290881,ENST00000563902 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_91507 | chr12:47795905-47796016 | -23.46 | -0.2193 | HDAC7 | ENST00000427332 | In-frame | | ENSG00000279716 | ENST00000624704 | exon_skip_481831 | chr8:22080804-22080870 | -20.46 | -0.3720 | DMTN | ENST00000265800,ENST00000523266 | In-frame | | ENSG00000279716 | ENST00000624704 | exon_skip_140232 | chr16:634888-634956 | -16.38 | -0.3412 | METTL26 | ENST00000301686 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_132574 | chr16:2528649-2528718 | -21.46 | -0.4292 | AMDHD2 | ENST00000293971 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000279716 | ENST00000624704 | exon_skip_38175 | chr1:234398381-234398553 | -17.97 | -0.1076 | TARBP1 | ENST00000040877 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_62623 | chr11:69079833-69079883 | -11.24 | -0.2614 | TPCN2 | ENST00000294309 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_66482 | chr11:126274926-126275021 | -16.92 | -0.2729 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_302168 | chr19:10680345-10680443 | -13.18 | -0.1757 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_327433 | chr2:86125794-86125880 | -8.98 | -0.3207 | PTCD3 | ENST00000254630 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_382458 | chr3:38131595-38131638 | -10.61 | -0.2526 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_470226 | chr7:103307595-103307708 | -20.09 | -0.2071 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_11029 | chr1:154989559-154989707 | -24.91 | -0.1742 | FLAD1 | ENST00000292180 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_41813 | chr10:68337857-68337996 | -20.31 | -0.1638 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_95407 | chr12:95040475-95040597 | -23.01 | -0.2018 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_133217 | chr16:8635038-8635079 | -13.86 | -0.3960 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_442657 | chr5:74730259-74730398 | -17.83 | -0.1393 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_23423 | chr1:26294204-26294331 | -19.20 | -0.1627 | UBXN11 | ENST00000374221,ENST00000374222 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_41841 | chr10:68756272-68756483 | -26.68 | -0.1321 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_53559 | chr10:101793912-101793998 | -15.80 | -0.2000 | OGA | ENST00000361464 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_80419 | chr12:15958187-15958335 | -15.65 | -0.1242 | DERA | ENST00000428559 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_99050 | chr12:128809942-128810111 | -15.38 | -0.1148 | SLC15A4 | ENST00000266771 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_127618 | chr15:58890280-58890461 | -21.53 | -0.1516 | SLTM | ENST00000380516 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_139933 | chr16:90035632-90035687 | -9.14 | -0.2229 | GAS8 | ENST00000268699 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_290158 | chr17:42953723-42953778 | -8.42 | -0.1684 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_300663 | chr19:1425877-1425960 | -12.55 | -0.1696 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_327748 | chr2:95410863-95411026 | -28.48 | -0.1803 | FAHD2A | ENST00000233379,ENST00000447036 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_365497 | chr22:38067703-38067770 | -14.65 | -0.3052 | PICK1 | ENST00000356976,ENST00000404072 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_370518 | chr22:50247691-50247776 | -17.20 | -0.2457 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_374497 | chr3:49999439-49999513 | -14.54 | -0.3231 | RBM6 | ENST00000266022 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_374551 | chr3:50100531-50100605 | -15.26 | -0.2461 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_440477 | chr5:181233412-181233435 | -6.20 | -0.2818 | TRIM41 | ENST00000315073 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_511212 | chrX:71555189-71555385 | -25.48 | -0.1348 | OGT | ENST00000373719 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_335426 | chr2:238016565-238016633 | -13.37 | -0.2228 | UBE2F | ENST00000272930 | Frame-shift | | ENSG00000279716 | ENST00000624704 | exon_skip_340759 | chr2:85552415-85552567 | -19.42 | -0.1482 | GGCX | ENST00000233838 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000279716 | ENSG00000013441 | CLK1 | ACC,BLCA,BRCA,CESC,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,OV,PAAD,PRAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCS,UVM | KIRC | | | ENSG00000279716 | ENSG00000049089 | COL9A2 | ACC,CESC,DLBC,LAML,LUAD,PAAD | LUAD | | | ENSG00000279716 | ENSG00000104859 | CLASRP | ACC,BLCA,BRCA,CHOL,DLBC,ESCA,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PRAD,SARC,SKCM,STAD,THCA,UCEC,UVM | KIRC | | | ENSG00000279716 | ENSG00000105245 | NUMBL | ACC,CHOL,KIRC,KIRP,THCA,THYM | KIRP | | | ENSG00000279716 | ENSG00000108773 | KAT2A | ACC,BLCA,BRCA,CHOL,DLBC,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,SKCM,THCA,UVM | BLCA,KIRC,KIRP,LUAD | | | ENSG00000279716 | ENSG00000127586 | CHTF18 | ACC,BLCA,BRCA,CHOL,ESCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,OV,PCPG,PRAD,SARC,SKCM,THCA,UCEC,UCS | BLCA,KIRC,KIRP,LUAD | | | ENSG00000279716 | ENSG00000130653 | PNPLA7 | ACC,BRCA,GBM,KICH,KIRC,KIRP,LAML,LGG,PAAD,THCA,UVM | KIRC | | | ENSG00000279716 | ENSG00000134897 | BIVM | ACC,BLCA,DLBC,KIRP,LGG,PCPG,THCA,UVM | KIRP | | | ENSG00000279716 | ENSG00000139636 | LMBR1L | ACC,BLCA,BRCA,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PRAD,SARC,SKCM,STAD,THCA,UCS,UVM | KIRC | | | ENSG00000279716 | ENSG00000143554 | SLC27A3 | ACC,CHOL,DLBC,KIRC,KIRP,THCA | KIRC,KIRP | | | ENSG00000279716 | ENSG00000164877 | MICALL2 | ACC,BLCA,BRCA,CHOL,ESCA,KIRC,KIRP,PAAD,STAD,THCA | KIRC,KIRP | | | ENSG00000279716 | ENSG00000184465 | WDR27 | ACC,BRCA,CESC,CHOL,DLBC,GBM,KIRC,KIRP,LGG,OV,PAAD,SARC,STAD,TGCT,THCA,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000279716 | ENSG00000240230 | COX19 | ACC,CHOL,KICH,KIRC,KIRP,OV,PAAD,STAD,THCA,UVM | KICH | | | ENSG00000279716 | ENSG00000250067 | YJEFN3 | ACC,BLCA,BRCA,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LGG,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,UCEC,UCS | BLCA,KIRC,KIRP | | | ENSG00000279716 | ENSG00000006025 | OSBPL7 | BLCA,BRCA,CESC,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,PAAD,SARC,SKCM,THCA,THYM | KIRP | | | ENSG00000279716 | ENSG00000044446 | PHKA2 | BLCA,GBM,KIRC,KIRP,LUAD,LUSC,MESO,PAAD,PRAD,SARC,SKCM,THCA,UVM | KIRC | | | ENSG00000279716 | ENSG00000061938 | TNK2 | BLCA,BRCA,KIRC,LAML,LGG,LUAD,LUSC,OV,PAAD,PRAD,THCA | KIRC | | | ENSG00000279716 | ENSG00000065357 | DGKA | BLCA,DLBC,KIRC,KIRP,LGG,LUAD,LUSC,PAAD,UCS | KIRC,KIRP | | | ENSG00000279716 | ENSG00000072609 | CHFR | BLCA,BRCA,CHOL,GBM,KIRC,KIRP,LGG,LUAD,OV,PAAD,PCPG,PRAD,THCA,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000073605 | GSDMB | BLCA,GBM,KIRC,LGG,LUAD,LUSC,PAAD,SARC,THCA,UCS | KIRC,LUAD | | | ENSG00000279716 | ENSG00000075399 | VPS9D1 | BLCA,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PCPG,THCA,UCS | KICH | | | ENSG00000279716 | ENSG00000079313 | REXO1 | BLCA,BRCA,CHOL,DLBC,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,OV,PAAD,PRAD,STAD,THCA,THYM | KICH | | | ENSG00000279716 | ENSG00000100068 | LRP5L | BLCA,BRCA,CESC,CHOL,DLBC,KICH,KIRP,LUAD,LUSC,PAAD,PRAD,STAD,THCA,UVM | KICH | | | ENSG00000279716 | ENSG00000100288 | CHKB | BLCA,BRCA,CHOL,DLBC,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PRAD,SKCM,STAD,THCA,UCS,UVM | KIRC | | | ENSG00000279716 | ENSG00000100429 | HDAC10 | BLCA,BRCA,CHOL,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PRAD,SKCM,THCA | KIRC,KIRP | | | ENSG00000279716 | ENSG00000102125 | TAZ | BLCA,BRCA,DLBC,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,SKCM,THCA,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000102287 | GABRE | BLCA,CHOL,KIRC,LUAD,LUSC,MESO,PAAD,SARC,THCA | KIRC,LUAD | | | ENSG00000279716 | ENSG00000103326 | CAPN15 | BLCA,BRCA,CHOL,DLBC,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,OV,PAAD,PCPG,PRAD,THCA | KICH,KIRC | | | ENSG00000279716 | ENSG00000104866 | PPP1R37 | BLCA,CHOL,ESCA,KICH,KIRC,LAML,LUAD,PRAD,TGCT | KICH | | | ENSG00000279716 | ENSG00000105643 | ARRDC2 | BLCA,BRCA,CHOL,ESCA,KIRC,KIRP,LAML,PAAD,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000109046 | WSB1 | BLCA,BRCA,CESC,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUSC,OV,PAAD,PCPG,PRAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCS,UVM | KIRC | | | ENSG00000279716 | ENSG00000113108 | APBB3 | BLCA,BRCA,CESC,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,OV,PAAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UVM | KIRC | | | ENSG00000279716 | ENSG00000113240 | CLK4 | BLCA,BRCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,PAAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000279716 | ENSG00000117616 | RSRP1 | BLCA,BRCA,DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,OV,PAAD,PRAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | BLCA,KIRC | | | ENSG00000279716 | ENSG00000127415 | IDUA | BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PRAD,SKCM,THCA | KIRC,KIRP | | | ENSG00000279716 | ENSG00000130158 | DOCK6 | BLCA,CESC,CHOL,GBM,KIRC,LUAD,OV,PAAD,PRAD,SARC,STAD,THCA | KIRC | | | ENSG00000279716 | ENSG00000130590 | SAMD10 | BLCA,CHOL,KIRC,KIRP,LAML,LGG,LUSC,MESO,PAAD,THCA | BLCA | | | ENSG00000279716 | ENSG00000131398 | KCNC3 | BLCA,CESC,LUAD,OV,PCPG,THCA | BLCA | | | ENSG00000279716 | ENSG00000132522 | GPS2 | BLCA,BRCA,CESC,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PRAD,SARC,SKCM,THCA,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000132530 | XAF1 | BLCA,CESC,DLBC,GBM,KIRC,LUAD,PAAD,THYM | BLCA,KIRC | | | ENSG00000279716 | ENSG00000132680 | KHDC4 | BLCA,BRCA,CESC,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,SKCM,STAD,THCA,THYM,UCEC,UVM | BLCA,LUAD | | | ENSG00000279716 | ENSG00000134253 | TRIM45 | BLCA,BRCA,CESC,CHOL,GBM,KIRP,LGG,LUAD,PRAD,TGCT,THYM,UCEC,UVM | LUAD | | | ENSG00000279716 | ENSG00000135722 | FBXL8 | BLCA,BRCA,CHOL,DLBC,KIRC,KIRP,LAML,LUAD,LUSC,PAAD,PRAD,SKCM,STAD,THCA | BLCA,KIRC,KIRP | | | ENSG00000279716 | ENSG00000137343 | ATAT1 | BLCA,BRCA,CESC,CHOL,DLBC,KIRC,KIRP,LAML,OV,PAAD,SARC,SKCM,STAD,TGCT,THCA,UCEC | BLCA | | | ENSG00000279716 | ENSG00000138834 | MAPK8IP3 | BLCA,BRCA,CESC,CHOL,DLBC,ESCA,KICH,KIRC,KIRP,LAML,LUAD,LUSC,MESO,OV,PAAD,PRAD,SKCM,STAD,THCA,THYM,UCEC,UCS,UVM | KIRC,KIRP,LUAD | | | ENSG00000279716 | ENSG00000139631 | CSAD | BLCA,BRCA,CESC,DLBC,ESCA,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000279716 | ENSG00000142675 | CNKSR1 | BLCA,BRCA,LUAD,LUSC,OV,PAAD,PRAD,THCA,UCEC | BLCA | | | ENSG00000279716 | ENSG00000143630 | HCN3 | BLCA,KIRC,KIRP,LUSC,SARC,STAD | BLCA | | | ENSG00000279716 | ENSG00000148824 | MTG1 | BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,PAAD,SARC,SKCM,STAD,THCA,THYM,UCEC,UCS,UVM | BLCA | | | ENSG00000279716 | ENSG00000157873 | TNFRSF14 | BLCA,BRCA,ESCA,KIRC,LUAD,LUSC,PAAD,PRAD,THCA | KIRC | | | ENSG00000279716 | ENSG00000158106 | RHPN1 | BLCA,BRCA,CESC,CHOL,GBM,KIRC,KIRP,PAAD,SKCM,STAD,TGCT,THCA,UCS | BLCA,KIRP | | | ENSG00000279716 | ENSG00000159314 | ARHGAP27 | BLCA,CESC,DLBC,KIRC,KIRP,LUAD,PAAD,PRAD,THCA,THYM,UCS | KIRP | | | ENSG00000279716 | ENSG00000161010 | MRNIP | BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,OV,PAAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000279716 | ENSG00000161960 | EIF4A1 | BLCA,BRCA,CESC,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,OV,PAAD,PRAD,SKCM,STAD,THYM,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000162194 | LBHD1 | BLCA,CHOL,DLBC,KIRP,PAAD,SKCM | KIRP | | | ENSG00000279716 | ENSG00000162650 | ATXN7L2 | BLCA,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,OV,PCPG,SARC,SKCM,STAD,TGCT,THCA,UCEC,UVM | BLCA,KIRP | | | ENSG00000279716 | ENSG00000163013 | FBXO41 | BLCA,CESC,DLBC,KIRC,KIRP,LUAD,LUSC,MESO,OV,PAAD,PRAD,SKCM,STAD,TGCT,THCA,THYM,UVM | BLCA,KIRC,KIRP,LUAD | | | ENSG00000279716 | ENSG00000164620 | RELL2 | BLCA,DLBC,KIRP,PAAD,THYM | BLCA | | | ENSG00000279716 | ENSG00000164938 | TP53INP1 | BLCA,KIRP,SARC,STAD,TGCT,UVM | KIRP | | | ENSG00000279716 | ENSG00000167535 | CACNB3 | BLCA,KIRC,KIRP,MESO,PAAD,SARC | BLCA,KIRP | | | ENSG00000279716 | ENSG00000167615 | LENG8 | BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000279716 | ENSG00000167702 | KIFC2 | BLCA,BRCA,CHOL,DLBC,KICH,KIRC,KIRP,LAML,PAAD,SKCM,TGCT,THCA,THYM,UCEC,UVM | BLCA,KICH,KIRC,KIRP | | | ENSG00000279716 | ENSG00000167861 | HID1 | BLCA,CESC,CHOL,ESCA,UCS | BLCA | | | ENSG00000279716 | ENSG00000168096 | ANKS3 | BLCA,BRCA,CHOL,DLBC,ESCA,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC,OV,PAAD,PRAD,SKCM,STAD,THCA,UVM | KIRP | | | ENSG00000279716 | ENSG00000172890 | NADSYN1 | BLCA,GBM,KIRC,KIRP,LAML,LGG,PAAD,THCA | KIRC | | | ENSG00000279716 | ENSG00000174788 | PCP2 | BLCA,KIRP,LAML,LUAD,THCA | BLCA | | | ENSG00000279716 | ENSG00000174943 | KCTD13 | BLCA,BRCA,CHOL,DLBC,KICH,KIRC,KIRP,LAML,LUAD,LUSC,PAAD,PRAD,TGCT,THCA | KIRC,KIRP | | | ENSG00000279716 | ENSG00000175265 | GOLGA8A | BLCA,DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,OV,PAAD,PCPG,PRAD,SARC,SKCM,STAD,THCA,UCS,UVM | BLCA,KIRC,KIRP | | | ENSG00000279716 | ENSG00000175309 | PHYKPL | BLCA,BRCA,CESC,DLBC,ESCA,GBM,KIRC,KIRP,LGG,PAAD,SARC,SKCM,STAD,THCA,THYM,UCEC,UVM | KIRC | | | ENSG00000279716 | ENSG00000175455 | CCDC14 | BLCA,CESC,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,OV,PAAD,PRAD,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | BLCA,KIRC,KIRP | | | ENSG00000279716 | ENSG00000177548 | RABEP2 | BLCA,BRCA,DLBC,KICH,KIRC,LAML,LUAD,LUSC,PAAD | KICH | | | ENSG00000279716 | ENSG00000178188 | SH2B1 | BLCA,BRCA,CESC,CHOL,DLBC,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,OV,PAAD,PRAD,SARC,SKCM,THCA,THYM,UCEC | KICH | | | ENSG00000279716 | ENSG00000182087 | TMEM259 | BLCA,BRCA,CHOL,DLBC,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PRAD,SARC,SKCM,TGCT,THCA | KICH | | | ENSG00000279716 | ENSG00000182325 | FBXL6 | BLCA,CHOL,GBM,KIRC,KIRP,LAML,LGG,THCA | BLCA,KIRC | | | ENSG00000279716 | ENSG00000184381 | PLA2G6 | BLCA,BRCA,CHOL,DLBC,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PRAD,SARC,SKCM,STAD,THCA,UCS,UVM | KIRC | | | ENSG00000279716 | ENSG00000185101 | ANO9 | BLCA,BRCA,CHOL,DLBC,KIRC,KIRP,PAAD,THCA | KIRC,KIRP | | | ENSG00000279716 | ENSG00000185215 | TNFAIP2 | BLCA,CHOL,KIRC,KIRP,PAAD,UVM | BLCA,KIRC,KIRP | | | ENSG00000279716 | ENSG00000186166 | CENATAC | BLCA,BRCA,CHOL,DLBC,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SARC,SKCM,STAD,THCA,UCEC,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000187583 | PLEKHN1 | BLCA,KIRC,KIRP,LUAD,PAAD,PRAD | KIRC,KIRP,LUAD | | | ENSG00000279716 | ENSG00000187867 | PALM3 | BLCA,CHOL,GBM,PAAD,UCEC | BLCA | | | ENSG00000279716 | ENSG00000187961 | KLHL17 | BLCA,BRCA,CHOL,DLBC,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PRAD,SKCM,THCA,UVM | BLCA,KIRC,LUAD | | | ENSG00000279716 | ENSG00000188827 | SLX4 | BLCA,CESC,CHOL,DLBC,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC,OV,PAAD,PCPG,PRAD,SARC,STAD,THYM,UVM | KICH | | | ENSG00000279716 | ENSG00000196123 | KIAA0895L | BLCA,BRCA,CESC,CHOL,DLBC,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCS,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000197774 | EME2 | BLCA,BRCA,CHOL,DLBC,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,OV,PAAD,PCPG,PRAD,SARC,SKCM,STAD,THCA,UVM | KIRC,KIRP,LUAD | | | ENSG00000279716 | ENSG00000197948 | FCHSD1 | BLCA,BRCA,DLBC,GBM,KIRC,KIRP,LAML,OV,PAAD,STAD,TGCT,THCA,THYM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000204149 | AGAP6 | BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,OV,PAAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000204305 | AGER | BLCA,BRCA,CESC,CHOL,DLBC,GBM,KIRC,KIRP,LAML,LGG,PAAD,SARC,STAD,UCEC,UCS,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000205517 | RGL3 | BLCA,BRCA,CESC,CHOL,GBM,KICH,KIRC,KIRP,LGG,LUAD,OV,PAAD,STAD,THCA,UCEC,UCS | BLCA,KICH | | | ENSG00000279716 | ENSG00000205560 | CPT1B | BLCA,CESC,CHOL,DLBC,KICH,LAML | BLCA,KICH | | | ENSG00000279716 | ENSG00000213139 | CRYGS | BLCA,CHOL,DLBC,KIRP,PAAD | BLCA,KIRP | | | ENSG00000279716 | ENSG00000213918 | DNASE1 | BLCA,BRCA,CESC,GBM,LGG,LUAD,LUSC,MESO,OV,PCPG,PRAD,SARC,SKCM,THCA,UCS | LUAD | | | ENSG00000279716 | ENSG00000214021 | TTLL3 | BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000279716 | ENSG00000215252 | GOLGA8B | BLCA,BRCA,CHOL,DLBC,ESCA,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,SKCM,STAD,THCA,UCS,UVM | BLCA,KIRC,KIRP | | | ENSG00000279716 | ENSG00000217930 | PAM16 | BLCA,BRCA,CHOL,DLBC,KICH,KIRC,KIRP,LGG,LUAD,PAAD,PRAD,THCA,UVM | KIRC | | | ENSG00000279716 | ENSG00000221978 | CCNL2 | BLCA,BRCA,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PRAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | BLCA,KIRC,KIRP,LUAD | | | ENSG00000279716 | ENSG00000239382 | ALKBH6 | BLCA,DLBC,LAML,LUSC,UCS | BLCA | | | ENSG00000279716 | ENSG00000256525 | POLG2 | BLCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SARC,SKCM,STAD,THCA,THYM,UVM | KIRC,KIRP,LUAD | | | ENSG00000279716 | ENSG00000267796 | LIN37 | BLCA,CHOL,GBM,KICH,KIRC,KIRP,LAML,LGG,LUSC,PRAD,TGCT,THCA | KIRC | | | ENSG00000279716 | ENSG00000273899 | NOL12 | BLCA,BRCA,CHOL,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC,PAAD,PRAD,SKCM,THCA,UCS | KIRC | | | ENSG00000279716 | ENSG00000004777 | ARHGAP33 | BRCA,CHOL,DLBC,KIRC,KIRP,LAML,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SKCM,STAD,THCA | KIRC,LUAD | | | ENSG00000279716 | ENSG00000008710 | PKD1 | BRCA,CHOL,DLBC,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,OV,THCA | KICH | | | ENSG00000279716 | ENSG00000076928 | ARHGEF1 | BRCA,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,OV,PAAD,PCPG,PRAD,SKCM,STAD,THCA,UVM | KIRC | | | ENSG00000279716 | ENSG00000077044 | DGKD | BRCA,CESC,GBM,KIRC,KIRP,LGG,OV,PAAD,TGCT,THYM | KIRC | | | ENSG00000279716 | ENSG00000109736 | MFSD10 | BRCA,CHOL,GBM,KIRC,KIRP,LAML,LGG | KIRP | | | ENSG00000279716 | ENSG00000115257 | PCSK4 | BRCA,CHOL,GBM,KICH,KIRC,KIRP,LGG,LUAD,PAAD,PCPG,THCA | KIRP | | | ENSG00000279716 | ENSG00000129946 | SHC2 | BRCA,CHOL,GBM,KIRC,LGG,LUAD,MESO,PAAD,SARC | KIRC | | | ENSG00000279716 | ENSG00000139625 | MAP3K12 | BRCA,DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,OV,PCPG,SARC,STAD,TGCT,THCA,THYM,UCS,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000141519 | CCDC40 | BRCA,CHOL,KIRC,KIRP,PRAD,UCS | KIRP | | | ENSG00000279716 | ENSG00000142002 | DPP9 | BRCA,CHOL,DLBC,KIRC,LAML,PAAD,THCA | KIRC | | | ENSG00000279716 | ENSG00000142303 | ADAMTS10 | BRCA,CHOL,GBM,KIRC,KIRP,LGG,LUAD,MESO,PAAD,SARC,THCA,THYM,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000145217 | SLC26A1 | BRCA,ESCA,LAML,LGG,LUAD,OV,PRAD,STAD,UVM | LUAD | | | ENSG00000279716 | ENSG00000160439 | RDH13 | BRCA,CHOL,KICH,KIRP,LUAD,PAAD,PCPG,PRAD,STAD | KICH | | | ENSG00000279716 | ENSG00000162572 | SCNN1D | BRCA,CHOL,GBM,KIRC,KIRP,LAML,LGG,LUAD,PAAD,PCPG,PRAD | KIRC,KIRP,LUAD | | | ENSG00000279716 | ENSG00000162591 | MEGF6 | BRCA,GBM,KIRC,LUAD,UCS | KIRC | | | ENSG00000279716 | ENSG00000164403 | SHROOM1 | BRCA,CHOL,KIRC,PAAD,THCA | KIRC | | | ENSG00000279716 | ENSG00000167604 | NFKBID | BRCA,GBM,KIRC,KIRP,LUAD,LUSC,PAAD,PRAD,STAD,THCA,UCS | KIRC,KIRP | | | ENSG00000279716 | ENSG00000169992 | NLGN2 | BRCA,CHOL,KIRC,KIRP,LGG,THYM | KIRP | | | ENSG00000279716 | ENSG00000183248 | PRR36 | BRCA,CESC,CHOL,KIRP,TGCT | KIRP | | | ENSG00000279716 | ENSG00000204681 | GABBR1 | BRCA,CHOL,DLBC,KIRC,KIRP,PAAD,SARC,SKCM,STAD,THCA,THYM,UCS,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000213903 | LTB4R | BRCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUAD,MESO,PAAD,PCPG,PRAD,SARC,TGCT,THCA,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000214193 | SH3D21 | BRCA,KIRC,LUAD,LUSC,PAAD,PRAD,THCA,UVM | KIRC,LUAD | | | ENSG00000279716 | ENSG00000014914 | MTMR11 | CESC,CHOL,KIRC,KIRP,MESO,PAAD,SARC | KIRC | | | ENSG00000279716 | ENSG00000131788 | PIAS3 | CESC,DLBC,GBM,KIRC,LGG,LUAD,SARC,TGCT,THYM | LUAD | | | ENSG00000279716 | ENSG00000142102 | PGGHG | CESC,DLBC,GBM,KIRC,KIRP,LGG,PAAD,SKCM,THCA,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000154760 | SLFN13 | CESC,CHOL,DLBC,KIRC,KIRP,PAAD,THCA | KIRC,KIRP | | | ENSG00000279716 | ENSG00000168488 | ATXN2L | CESC,CHOL,DLBC,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,THCA,THYM | KICH | | | ENSG00000279716 | ENSG00000184445 | KNTC1 | CESC,CHOL,DLBC,GBM,KIRC,KIRP,LUSC,PAAD,STAD,THYM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000213066 | CEP43 | CESC,KIRC,KIRP,TGCT,THCA | KIRC | | | ENSG00000279716 | ENSG00000266338 | NBPF15 | CESC,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUSC,MESO,PAAD,PCPG,PRAD,SARC,STAD,TGCT,THYM,UCS,UVM | KIRC | | | ENSG00000279716 | ENSG00000062716 | VMP1 | CHOL,DLBC,KIRC,KIRP,LUSC,MESO,PAAD,STAD,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000090924 | PLEKHG2 | CHOL,DLBC,GBM,KIRC,KIRP,LGG,STAD,TGCT | KIRC | | | ENSG00000279716 | ENSG00000104881 | PPP1R13L | CHOL,KIRC,KIRP,PAAD,THCA | KIRC | | | ENSG00000279716 | ENSG00000105486 | LIG1 | CHOL,GBM,KIRC,KIRP,LGG,LUSC,PRAD,TGCT,THCA | KIRC,KIRP | | | ENSG00000279716 | ENSG00000105655 | ISYNA1 | CHOL,GBM,KIRP,LAML,LUAD,MESO,OV,SARC | LUAD | | | ENSG00000279716 | ENSG00000120889 | TNFRSF10B | CHOL,DLBC,KIRC,KIRP,PAAD,THYM,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000124508 | BTN2A2 | CHOL,DLBC,KIRC,TGCT,THYM,UVM | KIRC | | | ENSG00000279716 | ENSG00000128298 | BAIAP2L2 | CHOL,KIRC,LGG,PRAD,UCS | KIRC | | | ENSG00000279716 | ENSG00000135723 | FHOD1 | CHOL,KIRC,KIRP,LAML,LUAD,PAAD,PRAD,TGCT,THCA | KIRC | | | ENSG00000279716 | ENSG00000141298 | SSH2 | CHOL,KIRP,STAD,TGCT,UVM | KIRP | | | ENSG00000279716 | ENSG00000141570 | CBX8 | CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUAD,PRAD,SARC,TGCT | LUAD | | | ENSG00000279716 | ENSG00000144802 | NFKBIZ | CHOL,DLBC,KIRC,KIRP,PAAD,THCA,THYM,UCS | KIRP | | | ENSG00000279716 | ENSG00000159147 | DONSON | CHOL,KIRC,KIRP,LGG,PCPG,PRAD,TGCT,THCA,UVM | KIRP | | | ENSG00000279716 | ENSG00000160271 | RALGDS | CHOL,DLBC,KIRC,LAML,LGG,THYM,UVM | KIRC | | | ENSG00000279716 | ENSG00000166012 | TAF1D | CHOL,GBM,KIRC,KIRP,LGG,LUSC,PAAD,PCPG,PRAD,SKCM,THCA,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000178026 | LRRC75B | CHOL,DLBC,GBM,KIRC,KIRP,LAML,LGG,LUAD | KIRC,KIRP | | | ENSG00000279716 | ENSG00000182472 | CAPN12 | CHOL,ESCA,KIRC,KIRP,LUAD,LUSC,PAAD | KIRC,KIRP,LUAD | | | ENSG00000279716 | ENSG00000185158 | LRRC37B | CHOL,ESCA,KIRC,KIRP,OV,PCPG,SARC,SKCM,STAD,TGCT,THCA,THYM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000188549 | CCDC9B | CHOL,KIRC,KIRP,LAML,PCPG,UVM | KIRP | | | ENSG00000279716 | ENSG00000213923 | CSNK1E | CHOL,KICH,KIRC,KIRP,LUSC,PRAD,TGCT,THCA,THYM,UVM | KIRC | | | ENSG00000279716 | ENSG00000215440 | NPEPL1 | CHOL,DLBC,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,PAAD,PRAD,SKCM,THCA,UCS,UVM | KIRC | | | ENSG00000279716 | ENSG00000258839 | MC1R | CHOL,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PCPG,TGCT,THCA,UVM | KIRP,LUAD | | | ENSG00000279716 | ENSG00000010295 | IFFO1 | DLBC,GBM,KIRC,KIRP,LGG,LUAD,MESO,PCPG,SKCM,THYM,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000069493 | CLEC2D | DLBC,GBM,KIRC,KIRP,LGG,LUSC,OV,PAAD,TGCT,UCS | KIRC,KIRP | | | ENSG00000279716 | ENSG00000091592 | NLRP1 | DLBC,KIRC,LUAD,LUSC,OV,STAD,TGCT,THCA | KIRC | | | ENSG00000279716 | ENSG00000092929 | UNC13D | DLBC,KIRC,LAML,LGG,PAAD | KIRC | | | ENSG00000279716 | ENSG00000101194 | SLC17A9 | DLBC,KIRC,KIRP,LAML,LUSC,PAAD,THCA | KIRC,KIRP | | | ENSG00000279716 | ENSG00000105639 | JAK3 | DLBC,KIRC,LUAD,LUSC,UCS | KIRC,LUAD | | | ENSG00000279716 | ENSG00000137841 | PLCB2 | DLBC,KIRC,LAML,LUAD,PAAD | KIRC | | | ENSG00000279716 | ENSG00000139899 | CBLN3 | DLBC,KIRC,KIRP,LUAD,LUSC,PAAD,THCA | KIRC | | | ENSG00000279716 | ENSG00000145014 | TMEM44 | DLBC,KIRC,KIRP,PAAD,THCA | KIRC,KIRP | | | ENSG00000279716 | ENSG00000158717 | RNF166 | DLBC,ESCA,KIRC,KIRP,LAML,LGG,LUAD,PAAD,PRAD,UVM | KIRC | | | ENSG00000279716 | ENSG00000167895 | TMC8 | DLBC,KIRC,LAML,LUAD,UCS | KIRC | | | ENSG00000279716 | ENSG00000173442 | EHBP1L1 | DLBC,KIRC,KIRP,PAAD,THYM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000185189 | NRBP2 | DLBC,GBM,KIRC,KIRP,LGG,PAAD,SARC,THCA,THYM,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000186088 | GSAP | DLBC,KIRC,KIRP,PAAD,STAD,THCA | KIRC,KIRP | | | ENSG00000279716 | ENSG00000222009 | BTBD19 | DLBC,KIRC,KIRP,OV,PAAD,STAD,THCA,THYM,UCS,UVM | KIRC,KIRP | | | ENSG00000279716 | ENSG00000225697 | SLC26A6 | DLBC,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,PCPG,PRAD,THCA | LUAD | | | ENSG00000279716 | ENSG00000060491 | OGFR | GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD | KIRC | | | ENSG00000279716 | ENSG00000099331 | MYO9B | GBM,KIRC,LAML,LGG,LUAD,LUSC,OV,PAAD,STAD,UCS | KIRC | | | ENSG00000279716 | ENSG00000115657 | ABCB6 | GBM,KIRC,LGG,PRAD,SARC | KIRC | | | ENSG00000279716 | ENSG00000135596 | MICAL1 | GBM,KIRC,KIRP,LGG,PAAD,STAD,TGCT | KIRC,KIRP | | | ENSG00000279716 | ENSG00000160323 | ADAMTS13 | GBM,KIRP,LGG,OV,PAAD,SARC,UCS,UVM | KIRP | | | ENSG00000279716 | ENSG00000205268 | PDE7A | GBM,KIRC,KIRP,LGG,PAAD,STAD,UVM | KIRC | | | ENSG00000279716 | ENSG00000240038 | AMY2B | GBM,KIRC,KIRP,LGG,LUAD,THCA | KIRC,KIRP | | | ENSG00000279716 | ENSG00000047634 | SCML1 | KICH,KIRC,KIRP,PAAD,PRAD,SKCM,THCA,THYM,UVM | KICH | | | ENSG00000279716 | ENSG00000054690 | PLEKHH1 | KICH,KIRC,KIRP,LUSC,OV,PAAD,PCPG,STAD,TGCT,THCA,THYM,UCS,UVM | KICH | | | ENSG00000279716 | ENSG00000204991 | SPIRE2 | KICH,LGG,LUAD,OV,PAAD,UCS | KICH,LUAD | | | ENSG00000279716 | ENSG00000009694 | TENM1 | KIRC,KIRP,PCPG,TGCT,THCA,UCS | KIRC,KIRP | | | ENSG00000279716 | ENSG00000108797 | CNTNAP1 | KIRC,MESO,OV,THCA,THYM | KIRC | | | ENSG00000279716 | ENSG00000177989 | ODF3B | KIRC,KIRP,LAML,LUAD,LUSC,PAAD | KIRC,KIRP | | | ENSG00000279716 | ENSG00000241404 | EGFL8 | KIRP,LAML,LGG,SKCM,TGCT,THYM,UCS,UVM | KIRP | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000279716.1 | ENST00000624704.1 | 44 | 630 | 496 |
|
