 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RPAP2,SPAG9,PUM1,MYCBP2,MFSD8,ATP6V1A,ANAPC1,RB1CC1,ZRANB1,CHM,RPS6KA3,DMTF1,SLF2,TMEM184C,SENP1,SLC38A2,KLHL28,CCDC14,NUP58,AFF4,MYO9A,ARAP2,SETD2,KNTC1,CREB1,KDM5A,EXOC8,PPIP5K2,CAPN7,SMAD2,OGT,ARIH1,NCBP1,PPTC7,ARID4B,ASH1L,CNST,CLOCK,PTAR1,TUT4,DNAJC16,RBM15,RIC8B,TOP2B,ATXN7,PEAK1,INTS6,RFX7,FOXJ3,XPNPEP3,MBD5,TTC21B,NPAT,NAPB,AP1G1,KPNA4,RAB3GAP2,NAA25,SETD5,ZFP62,MIS18BP1,SOCS4,CDC27,CHD9,BRAF,AGO3,PTPN14,GUF1,SBNO1,PHC3,INTS2,RNF111,NR2C2,R3HDM1,SMARCAD1,STAG2,PKN2,SLC30A6,XPO1,CDK17,ATG2B,ZFC3H1,MBTD1,SP3,SEPSECS,AP4E1,MAN1A2,ANKRD13C,CCNT1,HIPK1,CEP192,TTC3,PIK3C2A,PAFAH1B1,EIF2AK2,ATF7IP,SLF1,SELENOI,MARCHF6,CUL3,LTN1,ZMYM1,PIK3R4,ATM,THADA,MED14,CDK13,CAND1,DPY19L3,TRAF6,CSNK1G1,PAWR,MIB1,FEM1B,SPICE1,KLHL15,RSBN1,VEZF1,PRPF40A,SLC30A7,GSK3B,PIBF1,CLASP1,INO80D,ICE2,CNOT6L,KPNA1,PARP11,GCFC2,UBA6,TRNT1,ACAP2,UBR1,WAPL,TNKS2,KIAA1143,ZZZ3,DENND6A,UBR4,RC3H1,CBLB,OPA1,XPO4,SETX,ZNF44,SLC12A6,TRIM13,SMG1,XIAP,ATP7A,BCLAF3,DNAJB14,PUS7L,MSH3,ZCCHC14,LIN54,UBN2,DDX6,KIAA0586,LRIG2,ATP11C,NEMF,RTTN,SLC5A3,SMCHD1,CREBRF,MECP2,PRKD3,ZNF41,DOCK7,LATS1,DGKE,PAXBP1,EPS15,FNBP4,GTF2A1,ZNF28,SYNRG,BOD1L1,TMF1,EYA3,CHD2,GOLGA4,GPR180,ATG14,GOLGB1,METTL14,OTUD4,ZNF720,SLC39A10,HERC1,BTBD7,ROCK2,SCAF11,GK5,TOR1AIP2,TRMT13,TP53BP1,ZFHX3,AGPS,ATP6V0A2,ARPP19,LRBA,VPS54,SMAD4,TTC37,CBX5,RYK,CHD1,GTF3C4,HECTD4,TPR,GEN1,SFPQ,CARD8,PIK3CA,ATAD2B,CUL4B,NCOA2,PREPL,RALGAPA1,CEP120,TMX3,KLF12,ANGEL2,B3GALNT2,ROCK1,MYSM1,N4BP2,MED13L,ARID2,SEC24B,VPS13B,GABPA,HEATR1,PBRM1,TET3,PRR14L,PPM1A,RNPC3,RPS6KB1,PPP4R3B,LRCH3,UBXN7,CNOT4,SON,KMT2C,SIKE1,DENND4A,RLIM,MPHOSPH9,YTHDF3,CCNT2,HECTD1,EEA1,ZFP91,CHD6,AGO2,BRWD1,CNOT1,NIN,DDI2,TRAPPC11,PURB,ATP13A3,RO60,TBCK,MLH3,SP4,KANSL1L,UBR5,LNPEP,ITSN2,WDFY3,HEATR5B,ZNF106,LCOR,PANK3,DDHD1,MAP4K5,SLC4A7,UBR3,CENPC,DBT,RBM41,NOL9,NEPRO,FBXW11,TLK1,USP37,ASB7,POLK,PLEKHA3,CELF1,EPG5,KRR1,NFXL1,PRDM2,PMS1,DENND1B,WDR36,TIA1,PPP4R3A,MOSMO,RPS6KC1,KANSL1,TMTC3,RFX3,ZNF8,BMPR2,FAM13B,STX17,PPP2R5E,HELZ,ARFGEF1,ELF2,SPOPL,PTBP3,GAPVD1,ERCC8,TMCC1,ARHGAP5,ARL5B,KMT2A,TPP2,REV1,DYNC1LI2,APPL1,SOS1,ETV3,RBM33,RYBP,DSTYK,USP34,MOB1A,ODF2L,C21orf91,GPATCH8,TNPO1,MSL2,EXOC5,STAG1,TBL1XR1,GXYLT1,WASHC4,GNA13,FNDC3A,PDS5A,AASDH,ATRX,MAP3K2,IKZF5,SF3B1,NHLRC2,RUFY3,ZFYVE26,OGA,PAN3,CEP350,DCAF16,MORC3,PSME4,MINDY2,RICTOR,S100PBP,DPP8,USP24,TOGARAM1,BRWD3,TRIM23,SLC25A30,EXOG,ADNP,ORC4,FUBP1,NF1,TRIM33,LRP6,THAP6,DHX15,DDX17,ABL2,SENP7,AQR,FMR1,DYRK1A,ASXL2,STRN,CTDSPL2,CEP290,TRIP11,NEK1,TRPM7,TRAPPC8,GPALPP1,MKLN1,ATAD5,PHIP,CPSF2,ALS2,ELK4,KLC1,NCBP3,LRRC58,USF3,FBXO11,ZC3HAV1L,HP1BP3,VPS13C,ZFX,RMND5A,TJP1,APPBP2,LMBRD2,CNOT2,PIKFYVE,PUM2,TYW5,DHX36,NKTR,TRIP12,ZNF17,CEP170,ZNF84,SCYL2,BAZ2B,ARHGEF12,WDR33,NRIP1,LONP2,NEDD1,FRYL,JMJD1C,NSUN3,SPG11,TAB3,TBC1D5,TET2,CFAP97,ATF2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ARFGEF1,ANGEL2,ZC3H11A,MOB1B,TRIM33,VPS8,ZYG11B,CDK13,ATF7IP,LIMS1,MFSD8,UBR5,SOCS5,KDM5A,PAFAH1B1,TIA1,PIK3R4,MECP2,ZBED6,NCBP3,MOB1A,S100PBP,FAM73A,BRWD3,XPO4,XIAP,UBXN7,REST,MPHOSPH9,CASC4,RLIM,KLHL28,TMX3,SENP5,TLK1,CARD8,ANKRD13C,TET2,EXOC5,SIKE1,PRKD3,ITCH,SPICE1,PIK3C3,RIF1,LONP2,WAPL,ATAD5,RALGAPA1,FAM179B,MDM4,SLC4A7,INO80D | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | MRPL28,RNH1,SLC25A11,FKBP8,CCDC124 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000279541 | ENSG00000111300 | NAA25 | COAD,LAML,LUAD,STAD,UCEC | COAD | | | ENSG00000279541 | ENSG00000119285 | HEATR1 | COAD,ESCA,LAML,LUAD,STAD,UCEC | COAD | | | ENSG00000279541 | ENSG00000132953 | XPO4 | COAD,LAML,LUAD,STAD,UCEC | COAD | | | ENSG00000279541 | ENSG00000139496 | NUP58 | COAD,LAML,LUAD,STAD,UCEC | COAD | | | ENSG00000279541 | ENSG00000146858 | ZC3HAV1L | COAD,ESCA,LAML,STAD,UCEC | COAD | | | ENSG00000279541 | ENSG00000152520 | PAN3 | COAD,LAML,LUAD,STAD,UCEC | COAD | | | ENSG00000279541 | ENSG00000152749 | GPR180 | COAD,LAML,LUAD,STAD,UCEC | COAD | | | ENSG00000279541 | ENSG00000176208 | ATAD5 | COAD,LAML,LUAD,STAD,UCEC | COAD | | | ENSG00000279541 | ENSG00000184445 | KNTC1 | COAD,LAML,LUAD,STAD,UCEC | COAD | | | ENSG00000279541 | ENSG00000196236 | XPNPEP3 | COAD,ESCA,LAML,LUAD,STAD,UCEC | COAD | | | ENSG00000279541 | ENSG00000196950 | SLC39A10 | COAD,LAML,LUAD,STAD,UCEC | COAD | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000279541.1 | ENST00000623072.1 | 123 | 83 | 454 |
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