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lncRNA: ENSG00000279528

Summary for RP11-1148L6.8

Gene summary

Gene information	Ensembl ID	ENSG00000279528
	Gene symbol	RP11-1148L6.8
	Gene name
	HGNC
	Entrez ID
	Gene type	TEC
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-1148L6.8

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000279528	2.342341e+02	1.292337e+00	8.480862e-02	1.523827e+01	1.970000e-52	5.260000e-51	UP	KIRC
ENSG00000279528	2.014138e+02	1.215719e+00	1.557982e-01	7.803162e+00	6.040000e-15	6.010000e-14	UP	KICH
ENSG00000279528	2.098712e+02	1.260777e+00	1.296010e-01	9.728141e+00	2.290000e-22	7.000000e-21	UP	KIRP

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000279528	4.764203e-01	9.385889e-04	CHOL	1.620849e-03
ENSG00000279528	3.625739e-01	4.798283e-04	KICH	7.070231e-04
ENSG00000279528	4.511433e-01	8.086301e-32	KIRC	4.548544e-30
ENSG00000279528	3.219115e-01	9.458389e-15	PRAD	6.829513e-14

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lncRNA-Protein interaction for RP11-1148L6.8

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for RP11-1148L6.8

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-1148L6.8

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

NEK4,CMTM4,ARID1A,RNF123,RDX,PPP1R12A,GNL3L,KIAA1109,RASAL2,ITPR2,EIF4G1,PBRM1,SRRM2,ABLIM1,PSMC1,VPS13B,SACM1L,MAN1A2,L2HGDH,ATP11B,PRRC2C,SYNE2,SNX19,PDPK1,ACBD5,PHF3,CPEB4,ARID1B,STRN,KIDINS220,CYLD,PCCB,ACOX1,REPS1,TMCO3,FBXO11,ETFDH,SEC23A,MKLN1,MFSD9,ITSN2,RNF13,SMAD1,CLSPN,MFAP3L,AGFG1,TM7SF3,ZFAND3,TP53BP2,NDST1,YAP1,CCDC121,DLAT,MAIP1,FOXN3,HOMER1,PROSER3,ATP5F1B,OSBPL8,AZI2,PLSCR4,GPATCH8,FASTKD2,SEC23B,TUT7,GTF2I,CNST,HBP1,EIF4G2,IPO9,CD46,CLASP1,CUL2,PRKAR1A,ZZEF1,CPD,RABEP1,BTD,NOTCH2,ATF1,FNDC3B,ADAT1,FYCO1,NOMO2,HMGCR,CLIP4,DLST,PNPO,FRS2,KHNYN,TOM1L1,GBA,MPPE1,RNF214,MAP9,HECTD1,TUT4,SLAIN2,ACSL1,PKN2,PUM1,KANSL1L,SEC24B,KMT2D,CTNNB1,PKD2,TP53BP1,USP32,FERMT2,CLPB,UBE3C,IPO5,ALAS1,FRYL,RHOBTB3,UTRN,CEP350,BPHL,SORL1,PIKFYVE,ZCCHC2,EIF3C,SLC35A5,MAP3K3,GAPVD1,DNAJC13,MED13,WDR7,TMEM131,GNE,USP46,SMG6,ADH5,INVS,KIAA0232,NUP98,TRIP12,AKAP10,GTF2A1,TFIP11,GGCX,FLNB,CSNK1A1,ATP1A1,AKIRIN1,OSBPL1A,VRK2,TAF2,GCC2,STAG1,TEX2,PLAA,PIP5K1A,HEATR5A,FEM1B,RUSF1,TMBIM6,DOCK1,CTDSP2,NCOR1,EMC1,TAF5L,SCAF11,CNOT1,DSTYK,CAMSAP2,TRAP1,ITSN1,MYH9,NEDD4,DNAJC16,SECISBP2L,SEPTIN10,UBR1,DAG1,STX17,MINDY1,TAOK3,XPC,DBR1,UBE4A,DCUN1D1,ERBIN,DNAJC14,ZC3H11A,VGLL4,NBR1,THTPA,AFDN,PLEKHM1,ILK,UBE2D3,CLIP1,RFFL,ARNT,FAM219B,BCKDHA,DYNC2H1,GFM1,BCL2L2,RNF169,PRKAR2A,TBC1D2B,MAST4,ROCK2,MCCC1,UEVLD,MTO1,RREB1,UHRF1BP1,WNK1,CHURC1,TMLHE,KLHL5,LYSMD3,TIRAP,PEX19,PPARA,ANKRD26,HYOU1,GALC,SNX2,KIF2A,OGDH,PLS1,REST,POLK,RANBP2,AFF1,FAM114A2,VAMP3,TECPR2,ITFG1,MAGT1,CPSF2,SPG11,GLYR1,MAN2B2,IBTK,FER,SORD,CMIP,VPS26C,NT5C2,ZMYND11,HIPK1,RNF40,TACC1,CDKL5,SNX6,CEP104,PTPN11,MCM3AP,MID2,PLEKHB2,POLR2A,KCTD3,NR2C2,CLTC,ATRN,ALG12,AASDH,ATP2A2,ADD3,LZIC,HSPA8,APAF1,BBX,PCNX1,ERLIN2,UBR4,HSPA4L,IQGAP1,RAB29,SMARCA2,SLMAP,CMTR2,CIPC,FPGT,ARHGAP5,CLCC1,NKIRAS1,MPDZ,NBPF3,IKBKG,ILRUN,KDM1B,COPB2,SEC14L1,ARSB,KBTBD4,CDC40,MIDEAS,APP,RASA1,CERT1,PHC3,SIK3,TAF1B,SERINC3,SYNJ1,PIGN,TNPO1,SNX4,NEK7,RO60,BIRC6,ACADM,PPM1A,ZNF28,ARL5A,BCOR,SYNRG,CALCOCO2,TNFSF13,WWC2,DLG1,FRMD4B,MCFD2,SNAP47,NDUFS1,SLC39A6

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000279528	ENST00000623114	exon_skip_152655	chr17:42514288-42514460	-21.12	-0.1457	ATP6V0A1	ENST00000393829	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_319500	chr19:45413962-45414034	-11.55	-0.1833	ERCC1	ENST00000300853,ENST00000589165	In-frame
ENSG00000279528	ENST00000623114	exon_skip_382458	chr3:38131595-38131638	-11.30	-0.5381	ACAA1	ENST00000333167	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_92074	chr12:50142052-50142110	-5.71	-0.1543	CERS5	ENST00000317551	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_137309	chr16:66558189-66558348	-8.48	-0.1060	CKLF	ENST00000264001	In-frame
ENSG00000279528	ENST00000623114	exon_skip_302168	chr19:10680345-10680443	-8.01	-0.1232	ILF3	ENST00000590261	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_313557	chr19:5786748-5786845	-10.66	-0.1134	DUS3L	ENST00000309061	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_319223	chr19:43526200-43526349	-14.69	-0.1234	ETHE1	ENST00000292147	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_335781	chr2:241153475-241153604	-12.77	-0.1205	PPP1R7	ENST00000234038,ENST00000407025	In-frame
ENSG00000279528	ENST00000623114	exon_skip_353131	chr20:58669290-58669453	-22.36	-0.1389	STX16	ENST00000371141	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_353530	chr20:62304460-62304577	-14.23	-0.1949	ADRM1	ENST00000253003	In-frame
ENSG00000279528	ENST00000623114	exon_skip_363747	chr22:23877720-23877869	-18.42	-0.1574	SLC2A11	ENST00000345044	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_370518	chr22:50247691-50247776	-12.11	-0.2125	HDAC10	ENST00000216271	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_430112	chr4:75653982-75654081	-10.37	-0.1115	G3BP2	ENST00000359707,ENST00000395719	In-frame
ENSG00000279528	ENST00000623114	exon_skip_442657	chr5:74730259-74730398	-14.67	-0.1183	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_442702	chr5:75399309-75399387	-7.14	-0.1170	COL4A3BP	ENST00000405807	In-frame
ENSG00000279528	ENST00000623114	exon_skip_445390	chr5:150403120-150403312	-21.26	-0.1119	CD74	ENST00000009530	In-frame
ENSG00000279528	ENST00000623114	exon_skip_470226	chr7:103307595-103307708	-10.61	-0.1030	PMPCB	ENST00000249269	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_509943	chrX:47175018-47175092	-10.90	-0.1847	RBM10	ENST00000377604	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_132355	chr16:1786756-1786955	-19.50	-0.1054	NUBP2	ENST00000262302	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_337768	chr2:27312993-27313109	-13.25	-0.1380	MPV17	ENST00000233545,ENST00000380044	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_428778	chr4:17509270-17509363	-9.45	-0.1062	QDPR	ENST00000281243	In-frame
ENSG00000279528	ENST00000623114	exon_skip_52701	chr10:97468965-97469104	-18.52	-0.2646	MMS19	ENST00000370782,ENST00000438925	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_111870	chr14:23566561-23566686	-11.81	-0.1054	AP1G2	ENST00000397120	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_343108	chr2:127051153-127051243	-17.40	-0.2900	BIN1	ENST00000316724	In-frame
ENSG00000279528	ENST00000623114	exon_skip_120741	chr15:34228428-34228589	-16.01	-0.1067	EMC4	ENST00000267750	Frame-shift
ENSG00000279528	ENST00000623114	exon_skip_52671	chr10:97461495-97461622	-14.69	-0.1166	MMS19	ENST00000370782,ENST00000438925	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-1148L6.8

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000279528	ENST00000623114	NDUFS1	ENSG00000023228	ENST00000423725	-0.1562	1	-	KIRC
ENSG00000279528	ENST00000623114	NDUFS1	ENSG00000023228	ENST00000449699	-0.1562	1	-	KIRC
ENSG00000279528	ENST00000623114	NDUFS1	ENSG00000023228	ENST00000432169	-0.1562	1	-	KIRC
ENSG00000279528	ENST00000623114	MCCC1	ENSG00000078070	ENST00000486226	-0.1331	213	-	KIRC
ENSG00000279528	ENST00000623114	ITPR2	ENSG00000123104	ENST00000242737	-0.1336	211	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	HMGCR	ENSG00000113161	ENST00000509085	-0.3043	1	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	HMGCR	ENSG00000113161	ENST00000511986	-0.3043	1	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	PCCB	ENSG00000114054	ENST00000251654	-0.1073	1	-	KIRC
ENSG00000279528	ENST00000623114	PCCB	ENSG00000114054	ENST00000490504	-0.1073	1	-	KIRC
ENSG00000279528	ENST00000623114	PCCB	ENSG00000114054	ENST00000483687	-0.1073	1	-	KIRC
ENSG00000279528	ENST00000623114	PCCB	ENSG00000114054	ENST00000468777	-0.1073	1	-	KIRC
ENSG00000279528	ENST00000623114	PCCB	ENSG00000114054	ENST00000462637	-0.1073	1	-	KIRC
ENSG00000279528	ENST00000623114	PCCB	ENSG00000114054	ENST00000466072	-0.1073	1	-	KIRC
ENSG00000279528	ENST00000623114	PCCB	ENSG00000114054	ENST00000484181	-0.1008	1	-	KIRC
ENSG00000279528	ENST00000623114	PCCB	ENSG00000114054	ENST00000482086	-0.1073	1	-	KIRC
ENSG00000279528	ENST00000623114	PCCB	ENSG00000114054	ENST00000469217	-0.1073	1	-	KIRC
ENSG00000279528	ENST00000623114	PLSCR4	ENSG00000114698	ENST00000493382	-0.1500	371	-	KICH
ENSG00000279528	ENST00000623114	DNAJC16	ENSG00000116138	ENST00000472665	-0.1554	215	-	KIRP
ENSG00000279528	ENST00000623114	ACADM	ENSG00000117054	ENST00000420607	-0.1541	341	-	KIRC,KICH,KIRP
ENSG00000279528	ENST00000623114	BPHL	ENSG00000137274	ENST00000380375	-0.4265	1	-	KIRC,KICH,KIRP
ENSG00000279528	ENST00000623114	SORL1	ENSG00000137642	ENST00000525532	-0.1951	181	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	SORL1	ENSG00000137642	ENST00000532694	-0.1951	174	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	SORL1	ENSG00000137642	ENST00000534286	-0.1951	187	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	SORL1	ENSG00000137642	ENST00000527934	-0.1951	181	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	SORD	ENSG00000140263	ENST00000558580	-0.1009	1	-	KIRC,KICH,KIRP
ENSG00000279528	ENST00000623114	ACSL1	ENSG00000151726	ENST00000504342	-0.1278	325	-	KIRP
ENSG00000279528	ENST00000623114	ACSL1	ENSG00000151726	ENST00000513317	-0.2072	351	-	KIRP
ENSG00000279528	ENST00000623114	MFAP3L	ENSG00000198948	ENST00000506110	-0.6140	208	-	KIRC,KICH,KIRP
ENSG00000279528	ENST00000623114	SYNE2	ENSG00000054654	ENST00000341472	-0.1389	183	-	KIRC
ENSG00000279528	ENST00000623114	SYNE2	ENSG00000054654	ENST00000553455	-0.4000	337	-	KIRC
ENSG00000279528	ENST00000623114	SMARCA2	ENSG00000080503	ENST00000382186	-2.2800	312	-	KIRP
ENSG00000279528	ENST00000623114	ARSB	ENSG00000113273	ENST00000565165	-0.2168	217	-	KICH
ENSG00000279528	ENST00000623114	FRMD4B	ENSG00000114541	ENST00000398540	-0.1066	170	-	KICH
ENSG00000279528	ENST00000623114	FRMD4B	ENSG00000114541	ENST00000478263	-0.1066	170	-	KICH
ENSG00000279528	ENST00000623114	TACC1	ENSG00000147526	ENST00000518415	-0.1549	312	-	KIRP
ENSG00000279528	ENST00000623114	DOCK1	ENSG00000150760	ENST00000623213	-0.3371	303	-	KICH
ENSG00000279528	ENST00000623114	RHOBTB3	ENSG00000164292	ENST00000510623	-0.1158	118	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	RHOBTB3	ENSG00000164292	ENST00000504179	-0.8543	1	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	ABLIM1	ENSG00000099204	ENST00000440467	-0.2420	82	-	KIRC
ENSG00000279528	ENST00000623114	HOMER1	ENSG00000152413	ENST00000282260	-0.1471	181	-	KIRC,KICH,KIRP
ENSG00000279528	ENST00000623114	HOMER1	ENSG00000152413	ENST00000535690	-0.1471	181	-	KIRC,KICH,KIRP
ENSG00000279528	ENST00000623114	PLS1	ENSG00000120756	ENST00000497002	-0.3133	190	-	KICH
ENSG00000279528	ENST00000623114	MAST4	ENSG00000069020	ENST00000406374	-0.1750	330	-	KICH
ENSG00000279528	ENST00000623114	MAST4	ENSG00000069020	ENST00000452953	-0.1102	57	-	KICH
ENSG00000279528	ENST00000623114	MAST4	ENSG00000069020	ENST00000432817	-0.1005	224	-	KICH
ENSG00000279528	ENST00000623114	MAST4	ENSG00000069020	ENST00000434115	-0.1750	330	-	KICH
ENSG00000279528	ENST00000623114	MAST4	ENSG00000069020	ENST00000411628	-0.1005	224	-	KICH
ENSG00000279528	ENST00000623114	MAST4	ENSG00000069020	ENST00000403666	-0.1116	1	-	KICH
ENSG00000279528	ENST00000623114	MAST4	ENSG00000069020	ENST00000450827	-0.1867	1	-	KICH
ENSG00000279528	ENST00000623114	MAST4	ENSG00000069020	ENST00000407621	-0.1750	330	-	KICH
ENSG00000279528	ENST00000623114	MAST4	ENSG00000069020	ENST00000443808	-0.1116	1	-	KICH
ENSG00000279528	ENST00000623114	PKD2	ENSG00000118762	ENST00000502363	-0.5900	4	-	KICH
ENSG00000279528	ENST00000623114	TOM1L1	ENSG00000141198	ENST00000570371	-0.1312	161	-	KICH
ENSG00000279528	ENST00000623114	TOM1L1	ENSG00000141198	ENST00000572158	-0.1619	166	-	KICH
ENSG00000279528	ENST00000623114	ADD3	ENSG00000148700	ENST00000611329	-0.1373	326	-	KICH,KIRP
ENSG00000279528	ENST00000623114	WWC2	ENSG00000151718	ENST00000508614	-0.1191	1	-	KIRP
ENSG00000279528	ENST00000623114	UTRN	ENSG00000152818	ENST00000367545	-0.1517	1	-	KICH,KIRP
ENSG00000279528	ENST00000623114	UTRN	ENSG00000152818	ENST00000367526	-0.5050	94	-	KICH,KIRP
ENSG00000279528	ENST00000623114	ATP1A1	ENSG00000163399	ENST00000440951	-0.1369	95	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	MAP9	ENSG00000164114	ENST00000515654	-0.1485	112	-	KIRC,KICH
ENSG00000279528	ENST00000623114	KDM1B	ENSG00000165097	ENST00000546309	-0.3019	317	-	KICH
ENSG00000279528	ENST00000623114	KDM1B	ENSG00000165097	ENST00000449850	-0.1311	237	-	KICH
ENSG00000279528	ENST00000623114	AKIRIN1	ENSG00000174574	ENST00000531822	-0.1015	281	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	DYNC2H1	ENSG00000187240	ENST00000375735	-0.2604	1	-	KICH
ENSG00000279528	ENST00000623114	DYNC2H1	ENSG00000187240	ENST00000533197	-0.2604	1	-	KICH
ENSG00000279528	ENST00000623114	WNK1	ENSG00000060237	ENST00000574564	-0.2780	1	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	USP46	ENSG00000109189	ENST00000508499	-0.2051	211	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	USP46	ENSG00000109189	ENST00000512656	-0.2621	305	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	DAG1	ENSG00000173402	ENST00000435508	-0.2045	40	-	KIRC
ENSG00000279528	ENST00000623114	CMTM4	ENSG00000183723	ENST00000561680	-0.1513	310	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	CIPC	ENSG00000198894	ENST00000555437	-0.1495	1	-	KIRP
ENSG00000279528	ENST00000623114	L2HGDH	ENSG00000087299	ENST00000261699	-0.2424	47	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	L2HGDH	ENSG00000087299	ENST00000555423	-0.2221	1	-	KIRC,KIRP
ENSG00000279528	ENST00000623114	RAB29	ENSG00000117280	ENST00000414729	-0.2668	310	-	KIRC,KICH
ENSG00000279528	ENST00000623114	ALAS1	ENSG00000023330	ENST00000310271	-0.1041	312	-	KIRC
ENSG00000279528	ENST00000623114	ALAS1	ENSG00000023330	ENST00000484952	-0.1041	312	-	KIRC
ENSG00000279528	ENST00000623114	ALAS1	ENSG00000023330	ENST00000493402	-0.2653	17	-	KIRC

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000279528.1	ENST00000623114.1	45	182	45

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential