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lncRNA: ENSG00000279348

Summary for RP11-566E18.1

Gene summary

Gene information	Ensembl ID	ENSG00000279348
	Gene symbol	RP11-566E18.1
	Gene name
	HGNC
	Entrez ID
	Gene type	TEC
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-566E18.1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000279348	3.201459e+02	-1.354805e+00	3.007767e-01	-4.504355e+00	6.660000e-06	4.470000e-05	DOWN	GBM
ENSG00000279348	8.952498e+01	1.101125e+00	2.844759e-01	3.870714e+00	1.085170e-04	4.706450e-04	UP	CHOL
ENSG00000279348	2.450108e+02	1.333204e+00	3.375343e-01	3.949834e+00	7.820000e-05	1.480340e-03	UP	PCPG

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000279348	4.523022e-01	1.812531e-03	CHOL	2.807253e-03
ENSG00000279348	-4.292432e-01	2.700930e-05	KICH	5.283858e-05
ENSG00000279348	-3.519847e-01	3.579872e-19	KIRC	2.440822e-18
ENSG00000279348	-3.152434e-01	5.208372e-15	UCEC	5.277817e-14

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lncRNA-Protein interaction for RP11-566E18.1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000173473	SMARCC1	94.48	96.2186	Q92922	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000128908	INO80	83.2	96.15	Q9ULG1	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000036257	CUL3	77.24	91.2068	Q13618	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000077097	TOP2B	76.82	94.9195	Q02880	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000146247	PHIP	76.13	92.6471	Q8WWQ0	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000168137	SETD5	74.32	95.9404	Q9C0A6	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000118058	KMT2A	73.79	97.0424	Q03164	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000156983	BRPF1	71.22	94.2403	P55201	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000141867	BRD4	70.51	96.3111	O60885	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000171316	CHD7	66.49	97.4521	Q9P2D1	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000196367	TRRAP	65.77	92.1302	Q9Y4A5	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000197724	PHF2	64.89	94.8314	O75151	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000185658	BRWD1	61.13	97.0361	Q9NSI6	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000110851	PRDM4	60.93	92.6615	Q9UKN5	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000101126	ADNP	60.22	91.742	Q9H2P0	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000263001	GTF2I	57.58	95.2062	P78347	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000102221	JADE3	57.44	95.1102	Q92613	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000141027	NCOR1	57.23	96.8617	O75376	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000101040	ZMYND8	55.98	95.847	Q9ULU4	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000116731	PRDM2	53.57	95.2489	Q13029	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000147133	TAF1	52.78	94.416	P21675	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000183337	BCOR	52.71	96.1899	Q6W2J9	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000124177	CHD6	51.24	96.0967	Q8TD26	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000131149	GSE1	51.17	96.3506	Q14687	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000077684	JADE1	49.83	94.6701	Q6IE81	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000139613	SMARCC2	49.74	93.7322	Q8TAQ2	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000173575	CHD2	46.13	92.1785	O14647	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000171634	BPTF	45.5	95.3071	Q12830	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000140396	NCOA2	45.44	95.3102	Q15596	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000087206	UIMC1	44.7	93.8699	Q96RL1	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000153922	CHD1	44.29	92.5112	O14646	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000134852	CLOCK	43.66	95.4974	O15516	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000143442	POGZ	42.85	90.5593	Q7Z3K3	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000094631	HDAC6	42.5	90.4614	Q9UBN7	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000135655	USP15	41.36	95.6338	Q9Y4E8	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000167548	KMT2D	40.11	97.5522	O14686	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000163635	ATXN7	37.73	93.914	O15265	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000120616	EPC1	37.22	96.472	Q9H2F5	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000089094	KDM2B	35.93	92.6714	Q8NHM5	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000107625	DDX50	34.44	93.2254	Q9BQ39	RBP,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000197323	TRIM33	33.34	92.3486	Q9UPN9	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000156650	KAT6B	31.42	96.9832	Q8WYB5	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000169057	MECP2	24.72	92.1969	P51608	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000117625	RCOR3	19.78	94.13	Q9P2K3	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000152382	TADA1	14.64	90.4657	Q96BN2	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000162409	PRKAA2	13.03	90.5159	P54646	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000158161	EYA3	12.55	93.234	Q99504	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000143033	MTF2	9.25	92.4135	Q9Y483	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000145391	SETD7	8.92	90.6653	Q8WTS6	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000178691	SUZ12	95.75	93.2342	Q15022	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000080503	SMARCA2	84.53	94.8914	P51531	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000172943	PHF8	76.56	92.9106	Q9UPP1	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000080603	SRCAP	75.81	95.1722	Q6ZRS2	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000048649	RSF1	72.89	94.4414	Q96T23	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000092201	SUPT16H	71.52	94.5758	Q9Y5B9	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000171681	ATF7IP	70.17	90.6977	Q6VMQ6	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000005483	KMT2E	69.11	96.8888	Q8IZD2	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000064313	TAF2	68.92	90.3206	Q6P1X5	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000100888	CHD8	68.19	95.4863	Q9HCK8	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000213341	CHUK	66.82	91.6463	O15111	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000170004	CHD3	66.31	94.9815	Q12873	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000138375	SMARCAL1	65.33	94.176	Q9NZC9	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000165671	NSD1	65.31	91.022	Q96L73	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000117139	KDM5B	64.11	92.0748	Q9UGL1	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000111642	CHD4	63.53	95.701	Q14839	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000177200	CHD9	61.51	97.1966	Q3L8U1	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000165288	BRWD3	60.08	96.1374	Q6RI45	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000073614	KDM5A	58.35	93.8576	P29375	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000108557	RAI1	58.19	94.7848	Q7Z5J4	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000005339	CREBBP	56.75	97.2673	Q92793	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000100393	EP300	56.51	97.385	Q09472	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000165156	ZHX1	54.79	93.237	Q9UKY1	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000106443	PHF14	54.54	94.8304	O94880	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000204256	BRD2	53.5	94.6735	P25440	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000084676	NCOA1	53.38	94.9722	Q15788	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000076108	BAZ2A	52.77	91.6512	Q9UIF9	TF,RBP,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000168769	TET2	52.71	96.5683	Q6N021	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000198919	DZIP3	50.65	92.6469	Q86Y13	RBP,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000006459	KDM7A	49.29	92.8321	Q6ZMT4	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000139687	RB1	47.74	91.4377	P06400	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000186532	SMYD4	46.53	90.3269	Q8IYR2	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000173120	KDM2A	45.86	93.3045	Q9Y2K7	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000163104	SMARCAD1	43.75	93.1647	Q9H4L7	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000108799	EZH1	42.3	95.5278	Q92800	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000189079	ARID2	41.76	92.5458	Q68CP9	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000169925	BRD3	39.84	92.9771	Q15059	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000165732	DDX21	38.34	94.1213	Q9NR30	RBP,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000183495	EP400	36.89	97.0372	Q96L91	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000102974	CTCF	33.8	94.3348	P49711	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000164663	USP49	33.52	92.9288	Q70CQ1	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000124151	NCOA3	33.51	95.2827	Q9Y6Q9	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000043143	JADE2	32.75	93.8716	Q9NQC1	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000096717	SIRT1	31.04	92.0339	Q96EB6	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000116560	SFPQ	30.19	94.2457	P23246	RBP,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000135999	EPC2	28.25	96.0061	Q52LR7	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000120071	KANSL1	26.45	95.544	Q7Z3B3	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000132356	PRKAA1	24.48	92.7197	Q13131	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000071243	ING3	19.9	92.8924	Q9NXR8	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000130024	PHF10	19.01	93.3011	Q8WUB8	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000113812	ACTR8	14.97	93.7892	Q9H981	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000131263	RLIM	13.76	95.3713	Q9NVW2	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000177565	TBL1XR1	13.26	90.4682	Q9BZK7	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000015171	ZMYND11	8.1	92.5252	Q15326	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000115966	ATF2	7.25	91.9317	P15336	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000168283	BMI1	6.11	91.4484	P35226	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000163605	PPP4R2	5.69	90.9803	Q9NY27	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000163961	RNF168	4.84	92.3469	Q8IYW5	Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000073584	SMARCE1	2.46	92.406	Q969G3	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000102189	EEA1	89.76	96.0514	Q15075	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000174282	ZBTB4	83.14	93.8464	Q9P1Z0	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000110693	SOX6	75.84	93.7489	P35712	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000080603	SRCAP	75.81	95.2365	Q6ZRS2	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000118058	KMT2A	73.79	97.0987	Q03164	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000174306	ZHX3	70.49	93.303	Q9H4I2	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000164916	FOXK1	68.67	91.8716	P85037	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000117139	KDM5B	64.11	92.1862	Q9UGL1	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000100207	TCF20	62.58	95.0496	Q9UGU0	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000080298	RFX3	62.31	93.5214	P48380	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000257923	CUX1	61.37	94.8138	P39880	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000110851	PRDM4	60.93	92.8078	Q9UKN5	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000166454	ATMIN	60.78	90.6509	O43313	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000196867	ZFP28	60.66	94.2216	Q8NHY6	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000101126	ADNP	60.22	91.8624	Q9H2P0	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000099326	MZF1	59.11	94.1685	P28698	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000181827	RFX7	58.75	94.5895	Q2KHR2	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000263001	GTF2I	57.58	95.4811	P78347	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000124782	RREB1	57.49	92.6805	Q92766	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000134874	DZIP1	56.93	92.533	Q86YF9	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000104447	TRPS1	56.48	94.7659	Q9UHF7	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000165156	ZHX1	54.79	93.3908	Q9UKY1	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000105127	AKAP8	54.05	94.0232	O43823	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000116731	PRDM2	53.57	95.351	Q13029	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000084676	NCOA1	53.38	95.1148	Q15788	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000076108	BAZ2A	52.77	91.8184	Q9UIF9	TF,RBP,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000168769	TET2	52.71	96.759	Q6N021	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000147124	ZNF41	51.17	93.4949	P51814	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000140836	ZFHX3	46.1	96.2219	Q15911	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000173120	KDM2A	45.86	93.2509	Q9Y2K7	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000171634	BPTF	45.5	95.3743	Q12830	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000140396	NCOA2	45.44	95.4444	Q15596	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000198300	PEG3	45.14	95.095	Q9GZU2	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000106546	AHR	43.71	91.9804	P35869	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000134852	CLOCK	43.66	95.6157	O15516	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000156273	BACH1	43.28	94.4052	O14867	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000167232	ZNF91	42.19	95.3949	Q05481	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000143437	ARNT	41.98	93.3264	P27540	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000117000	RLF	41.89	94.7039	Q13129	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000189079	ARID2	41.76	92.7194	Q68CP9	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000198521	ZNF43	40.99	93.1823	P17038	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000169554	ZEB2	40.55	95.5551	O60315	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000124459	ZNF45	37.0	94.4865	Q02386	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000089094	KDM2B	35.93	92.6397	Q8NHM5	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000106571	GLI3	35.7	93.7002	P10071	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000196670	ZFP62	35.4	94.2505	Q8NB50	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000198538	ZNF28	34.96	93.9639	P17035	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000102974	CTCF	33.8	94.4993	P49711	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000124151	NCOA3	33.51	95.3293	Q9Y6Q9	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000172379	ARNT2	33.5	92.454	Q9HBZ2	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000148516	ZEB1	32.69	93.0557	P37275	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000165821	SALL2	32.69	93.0546	Q9Y467	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000114439	BBX	32.41	95.3683	Q8WY36	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000077092	RARB	31.12	90.7867	P10826	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000198040	ZNF84	31.1	94.4905	P51523	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000198815	FOXJ3	27.17	90.8866	Q9UPW0	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000186272	ZNF17	25.42	94.0012	P17021	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000169057	MECP2	24.72	92.2442	P51608	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000197857	ZNF44	23.5	94.3008	P15621	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000184939	ZFP90	22.66	92.8432	Q8TF47	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000169981	ZNF35	21.95	93.6133	P13682	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000168661	ZNF30	20.34	92.7834	P17039	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000105708	ZNF14	20.12	92.766	P17017	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000196233	LCOR	19.52	93.2052	Q96JN0	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000171649	ZIK1	18.01	92.8037	Q3SY52	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000062194	GPBP1	17.7	93.1452	Q86WP2	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000204304	PBX2	17.7	92.7418	P40425	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000105856	HBP1	17.63	92.6515	O60381	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000143842	SOX13	16.49	91.0814	Q9UN79	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000120784	ZFP30	16.0	92.1323	Q9Y2G7	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000120690	ELF1	15.81	91.6599	P32519	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000170653	ATF7	15.73	91.5639	P17544	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000132846	ZBED3	15.68	90.4485	Q96IU2	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000181472	ZBTB2	14.27	91.3792	Q8N680	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000198429	ZNF69	13.38	94.1238	Q9UC07	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000186660	ZFP91	12.6	92.2403	Q96JP5	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000172466	ZNF24	12.54	92.1247	P17028	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000221944	TIGD1	12.4	90.3683	Q96MW7	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000167766	ZNF83	11.05	92.7511	P51522	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000166526	ZNF3	9.57	92.8237	P17036	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000143033	MTF2	9.25	92.3503	Q9Y483	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000185630	PBX1	9.11	93.6455	P40424	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000196152	ZNF79	8.68	92.7806	Q15937	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000187815	ZFP69	8.23	92.95	Q49AA0	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000143390	RFX5	7.51	94.5376	P48382	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000115966	ATF2	7.25	92.3895	P15336	TF,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000187792	ZNF70	7.11	92.4936	Q9UC06	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000054598	FOXC1	6.75	93.7022	Q12948	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000095574	IKZF5	6.26	92.0836	Q9H5V7	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000146757	ZNF92	5.5	92.6484	Q03936	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000114126	TFDP2	5.35	92.0193	Q14188	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000105750	ZNF85	5.22	93.4638	Q03923	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000175395	ZNF25	4.71	94.5467	P17030	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000146592	CREB5	4.58	90.8888	Q02930	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000275111	ZNF2	4.36	93.0466	Q9BSG1	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000158711	ELK4	2.48	93.1479	P28324	TF	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000198939	ZFP2	1.49	90.0296	Q6ZN57	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000145833	DDX46	83.09	92.6313	Q7L014	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000137628	DDX60	78.18	94.8015	Q8IY21	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000159082	SYNJ1	68.15	95.6195	O43426	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000198231	DDX42	67.7	91.2664	Q86XP3	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000163728	TTC14	64.64	90.9119	Q96N46	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000075856	SART3	62.99	93.8834	Q15020	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000003756	RBM5	61.35	93.4266	P52756	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000114127	XRN1	61.09	95.9685	Q8IZH2	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000213079	SCAF8	60.53	94.2997	Q9UPN6	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000064607	SUGP2	60.46	93.1191	Q8IX01	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000198000	NOL8	59.34	94.3923	Q76FK4	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000125485	DDX31	58.02	93.6581	Q9H8H2	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000079785	DDX1	57.23	92.2282	Q92499	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000076108	BAZ2A	52.77	91.8399	Q9UIF9	TF,RBP,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000137776	SLTM	52.16	96.3743	Q9NWH9	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000139746	RBM26	52.01	90.1833	Q5T8P6	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000198919	DZIP3	50.65	92.7263	Q86Y13	RBP,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000100201	DDX17	40.9	90.0239	Q92841	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000135870	RC3H1	38.9	94.2606	Q5TC82	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000165732	DDX21	38.34	94.4268	Q9NR30	RBP,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000107625	DDX50	34.44	93.7679	Q9BQ39	RBP,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000116560	SFPQ	30.19	94.3654	P23246	RBP,Epi	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000161813	LARP4	29.33	91.3724	Q71RC2	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000145907	G3BP1	29.24	92.9339	Q13283	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000129351	ILF3	26.33	92.7154	Q12906	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000124193	SRSF6	21.47	91.7913	Q13247	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000102081	FMR1	19.52	91.1651	Q06787	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000127993	RBM48	19.21	91.0846	Q5RL73	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000121390	PSPC1	18.25	94.6151	Q8WXF1	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000167978	SRRM2	17.95	97.9548	Q9UQ35	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000215301	DDX3X	17.13	93.9705	O00571	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000155636	RBM45	12.74	90.7304	Q8IUH3	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000147274	RBMX	11.53	93.7337	P38159	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000149532	CPSF7	10.93	92.1813	Q8N684	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000185946	RNPC3	10.04	92.0966	Q96LT9	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000172795	DCP2	8.38	91.2263	Q8IU60	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000145414	NAF1	7.93	93.8981	Q96HR8	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000144642	RBMS3	7.49	92.2672	Q6XE24	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000155858	LSM11	6.6	92.6342	P83369	RBP	NA
ENSG00000279348	ENST00000623250	RP11-566E18.1	ENSG00000104177	MYEF2	5.22	92.7242	Q9P2K5	RBP	NA

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lncRNA-DNA interaction for RP11-566E18.1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-566E18.1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

GEMIN7,PSMB5,TECR,PUSL1,TP53I13,DNAJC4,MPG,DPP7,REX1BD,MCRIP2,SMIM12,TCIRG1,AIF1,DDT,RNF181,ECH1,NDUFA13,TOMM40,NUDT22,CD320,NAGLU,S100A11,MRPL51,PAXX,ATOX1,GSTZ1,MOB2,FTL,PCYT2,AURKAIP1,NDUFB2,ALDOA,SEM1,APOE,MRPL40,CDC34,SLC25A11,PET100,BLOC1S1,CIB1,S100A6,CORO7,BCL7C,MAD2L2,TMEM53,COX6A1,FPGS,CTU2,MLF2,ARPC4,BCL2L12,EDF1,IFITM3,CCDC159,POLD4,ASL,SRA1,THAP7,ACOT8,SERF2,TMUB1,ASPSCR1,TMEM160,ATP5ME,TRAPPC6A,IRF7,LGALS1,MRPL27,COX4I1,DTX2,PHPT1,DCXR,TOM1,MIIP,YIF1A,RPL35,GPX4,ANTKMT,NME3,GAMT,H2AJ,MRPS34,ALG3,PSMB10,SLIRP,SCAND1,ZNRD2,RENBP,COX6B1,UQCRC1,MYDGF,PARP10,PGAP6,TMEM208,AP2M1,FAM3A,SIVA1,MRPL55,ROMO1,DHRS4L2,CYBA,RHOG,NAPRT,COPE,TIMM10,SCYL1,TNFRSF14,EMP3,PPP1CA,PTPN6,C1orf54,NDUFB10,TAGLN2,MT2A,SELENOO,C8orf82,IFI35,APRT,OXA1L,FBXO6,CYC1,MRPL41,RHOT2,COMMD1,COX14,GAPDH,PARK7,SDF2L1,PPDPF,COMTD1,CD99,GPX1,DPM3,DYNLL1,HCST,MPST,MRPL2,GALK1,RFNG,WDR18,BLVRB,MRPL28,HMOX2,TYROBP,NDUFB4,MCRIP1,HSPB1,CAPG,PLEKHJ1,COX17,ELOB,EIF6,SLC50A1,UQCRQ,TXN2,CST3,MRPL47,ETHE1,TMEM256,LMNA,KIAA2013,RABEP2,PSME2,ARSA,NMRAL1,LYPLA2,TEX264,PSME1,NAA60,PRDX5,ADRM1,GUK1,MRPL54,PPP1R14B,SIPA1,CBR1,SMCO4,CINP,RHBDD3,ACD,STUB1,RPN1,TMEM120A,PKM,RABAC1,ECI1,GSDMD,QPCTL,NDUFS6,VKORC1,NUDT14,SHKBP1,YBEY,TSPO,VPS9D1,CLTA,P4HB,NUPR1,SIGIRR,SAC3D1,IPO4,CIAO2B,CTSD,BANF1,MGST2,GFER,EMC9,FLYWCH2,TRPT1,ATP5MC1,SRM,ACADVL,ATP5PF,CFL1,FBXL6,PEX16,HINT2,MRPL52,SLC22A18,PSMD8,FAM207A,NDUFS8,NDUFS7,SDSL,FAH,GMFG,ATP5F1D,MYL6,RPS6KB2,RNF113A,POLR2E,COPS6,MYL5,NTMT1,COX5A,ATPAF2,BTBD6,IFI27L1,YIF1B,FCGRT,LST1,CAPZB,SAT2,TRAPPC2L,ATP5MF,NDUFB7,IFI27L2,NFKBIB,BRI3,TXNRD2,METTL26,RANGRF,OGFR,FDX2,HSD17B14,FKBP2,ABHD12,HCFC1R1,OCEL1,NDUFA3,PEMT,NDUFAF3,SMIM4,NUBP2,NSMCE1,MSRB1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000279348	ENST00000623250	exon_skip_6457	chr1:52083339-52083541	-15.68	-0.1018	BTF3L4	ENST00000313334	Frame-shift
ENSG00000279348	ENST00000623250	exon_skip_90104	chr12:10709907-10710114	-20.22	-0.1567	YBX3	ENST00000228251	In-frame
ENSG00000279348	ENST00000623250	exon_skip_150854	chr17:32366664-32366757	-10.81	-0.1481	ZNF207	ENST00000321233	In-frame
ENSG00000279348	ENST00000623250	exon_skip_460899	chr6:85538837-85538864	-6.86	-0.6860	SNX14	ENST00000314673	In-frame
ENSG00000279348	ENST00000623250	exon_skip_462554	chr6:136267028-136267175	-13.99	-0.1068	BCLAF1	ENST00000531224	In-frame
ENSG00000279348	ENST00000623250	exon_skip_484062	chr8:73030335-73030395	-9.56	-0.1838	TERF1	ENST00000276603	In-frame
ENSG00000279348	ENST00000623250	exon_skip_508362	chr9:136676584-136676680	-12.06	-0.1748	AGPAT2	ENST00000371696,ENST00000538402	In-frame
ENSG00000279348	ENST00000623250	exon_skip_84898	chr12:62566013-62566031	-5.28	-0.8800	MON2	ENST00000393630	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000279348	ENST00000623250	exon_skip_361485	chr21:29008239-29008307	-9.66	-0.2247	RWDD2B	ENST00000493196	Frame-shift
ENSG00000279348	ENST00000623250	exon_skip_66185	chr11:124626472-124626609	-16.07	-0.1286	TBRG1	ENST00000441174	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000279348	hsa-mir-185	ENST00000623250	chr2:216212586-216212668	199.00	-94.20	74	NA
ENSG00000279348	hsa-mir-185	ENST00000623250	chr2:216212509-216212594	175.00	-85.38	84	NA
ENSG00000279348	hsa-mir-185	ENST00000623250	chr2:216211789-216211874	161.00	-83.29	83	NA
ENSG00000279348	hsa-mir-185	ENST00000623250	chr2:216212139-216212224	157.00	-85.59	72	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216213276-216213368	205.00	-73.63	92	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216211811-216211900	189.00	-83.44	91	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216212073-216212163	182.00	-75.28	92	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216211443-216211532	181.00	-72.12	90	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216212806-216212901	178.00	-67.37	93	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216213101-216213191	172.00	-75.86	90	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216211523-216211613	170.00	-85.79	88	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216212243-216212337	169.00	-80.55	92	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216213404-216213490	160.00	-64.31	86	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216212418-216212509	153.00	-64.35	76	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216211982-216212063	152.00	-75.30	82	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216212714-216212806	150.00	-84.30	79	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216213195-216213282	150.00	-71.12	84	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216211708-216211804	147.00	-68.66	94	NA
ENSG00000279348	hsa-mir-3614	ENST00000623250	chr2:216212556-216212642	147.00	-83.10	87	NA
ENSG00000279348	hsa-mir-501	ENST00000623250	chr2:216211813-216211913	222.00	-85.34	99	NA
ENSG00000279348	hsa-mir-501	ENST00000623250	chr2:216211897-216211981	212.00	-69.83	74	NA
ENSG00000279348	hsa-mir-501	ENST00000623250	chr2:216211456-216211546	203.00	-76.89	88	NA
ENSG00000279348	hsa-mir-501	ENST00000623250	chr2:216213066-216213150	190.00	-79.25	83	NA
ENSG00000279348	hsa-mir-501	ENST00000623250	chr2:216212258-216212340	188.00	-72.58	88	NA
ENSG00000279348	hsa-mir-501	ENST00000623250	chr2:216212165-216212251	183.00	-83.83	86	NA
ENSG00000279348	hsa-mir-501	ENST00000623250	chr2:216212763-216212850	179.00	-72.47	86	NA
ENSG00000279348	hsa-mir-501	ENST00000623250	chr2:216212563-216212633	176.00	-81.73	81	NA
ENSG00000279348	hsa-mir-501	ENST00000623250	chr2:216211540-216211627	174.00	-83.35	84	NA
ENSG00000279348	hsa-mir-501	ENST00000623250	chr2:216211981-216212067	168.00	-76.53	78	NA
ENSG00000279348	hsa-mir-501	ENST00000623250	chr2:216212437-216212518	156.00	-67.75	81	NA
ENSG00000279348	hsa-mir-501	ENST00000623250	chr2:216211720-216211808	151.00	-66.40	88	NA
ENSG00000279348	hsa-mir-501	ENST00000623250	chr2:216213197-216213284	148.00	-71.81	87	NA
ENSG00000279348	hsa-mir-501	ENST00000623250	chr2:216213274-216213362	141.00	-70.66	78	NA

Top

Variants for RP11-566E18.1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000279348	ENST00000623250	CAPG	ENSG00000042493	ENST00000263867	-0.1243	9	GBM	-
ENSG00000279348	ENST00000623250	CAPG	ENSG00000042493	ENST00000453973	-0.1243	14	GBM	-
ENSG00000279348	ENST00000623250	CAPG	ENSG00000042493	ENST00000409921	-0.1403	28	GBM	-
ENSG00000279348	ENST00000623250	CAPG	ENSG00000042493	ENST00000409670	-0.3932	89	GBM	-
ENSG00000279348	ENST00000623250	CYBA	ENSG00000051523	ENST00000261623	-0.2218	1658	GBM	-
ENSG00000279348	ENST00000623250	PHPT1	ENSG00000054148	ENST00000371661	-0.1030	1153	GBM	-
ENSG00000279348	ENST00000623250	PHPT1	ENSG00000054148	ENST00000247665	-0.1139	1245	GBM	-
ENSG00000279348	ENST00000623250	NDUFB4	ENSG00000065518	ENST00000184266	-0.1246	1	-	PCPG
ENSG00000279348	ENST00000623250	NDUFB4	ENSG00000065518	ENST00000492739	-0.1284	953	-	PCPG
ENSG00000279348	ENST00000623250	IFI35	ENSG00000068079	ENST00000415816	-0.1422	1611	GBM	-
ENSG00000279348	ENST00000623250	IFI35	ENSG00000068079	ENST00000438323	-0.1422	1611	GBM	-
ENSG00000279348	ENST00000623250	SELENOO	ENSG00000073169	ENST00000380903	-0.1170	1	-	CHOL
ENSG00000279348	ENST00000623250	SELENOO	ENSG00000073169	ENST00000611222	-0.1170	1	-	CHOL
ENSG00000279348	ENST00000623250	MYDGF	ENSG00000074842	ENST00000599761	-0.1031	132	GBM	-
ENSG00000279348	ENST00000623250	MYDGF	ENSG00000074842	ENST00000599630	-0.1343	112	GBM	-
ENSG00000279348	ENST00000623250	VKORC1	ENSG00000167397	ENST00000394971	-0.1067	715	GBM	CHOL
ENSG00000279348	ENST00000623250	VKORC1	ENSG00000167397	ENST00000498155	-0.1349	496	GBM	CHOL
ENSG00000279348	ENST00000623250	TRAPPC2L	ENSG00000167515	ENST00000567312	-0.1513	702	-	PCPG
ENSG00000279348	ENST00000623250	TRAPPC2L	ENSG00000167515	ENST00000561840	-0.2275	1602	-	PCPG
ENSG00000279348	ENST00000623250	SLC50A1	ENSG00000169241	ENST00000484157	-0.2026	55	GBM	PCPG
ENSG00000279348	ENST00000623250	MCRIP2	ENSG00000172366	ENST00000307650	-0.1086	409	-	PCPG
ENSG00000279348	ENST00000623250	YIF1A	ENSG00000174851	ENST00000496746	-0.2035	1778	GBM	CHOL
ENSG00000279348	ENST00000623250	YIF1A	ENSG00000174851	ENST00000471387	-0.1355	1628	GBM	CHOL
ENSG00000279348	ENST00000623250	YIF1A	ENSG00000174851	ENST00000359461	-0.2035	1778	GBM	CHOL
ENSG00000279348	ENST00000623250	YIF1A	ENSG00000174851	ENST00000376901	-0.2035	1778	GBM	CHOL
ENSG00000279348	ENST00000623250	YIF1A	ENSG00000174851	ENST00000484814	-0.1075	1074	GBM	CHOL
ENSG00000279348	ENST00000623250	BANF1	ENSG00000175334	ENST00000527348	-0.1604	1568	GBM	-
ENSG00000279348	ENST00000623250	DPM3	ENSG00000179085	ENST00000368399	-0.2126	1193	GBM	CHOL
ENSG00000279348	ENST00000623250	DPM3	ENSG00000179085	ENST00000368400	-0.2126	1193	GBM	CHOL
ENSG00000279348	ENST00000623250	DPM3	ENSG00000179085	ENST00000341298	-0.2126	1193	GBM	CHOL
ENSG00000279348	ENST00000623250	P4HB	ENSG00000185624	ENST00000576390	-0.1717	1482	GBM	PCPG
ENSG00000279348	ENST00000623250	P4HB	ENSG00000185624	ENST00000439918	-0.6527	507	GBM	PCPG
ENSG00000279348	ENST00000623250	MSRB1	ENSG00000198736	ENST00000473663	-0.1206	1269	GBM	CHOL
ENSG00000279348	ENST00000623250	MSRB1	ENSG00000198736	ENST00000399753	-0.1389	1117	GBM	CHOL
ENSG00000279348	ENST00000623250	MSRB1	ENSG00000198736	ENST00000564908	-0.2349	1162	GBM	CHOL
ENSG00000279348	ENST00000623250	APRT	ENSG00000198931	ENST00000426324	-0.1053	1489	GBM	-
ENSG00000279348	ENST00000623250	SRA1	ENSG00000213523	ENST00000602657	-0.1006	1593	GBM	PCPG
ENSG00000279348	ENST00000623250	GPX1	ENSG00000233276	ENST00000419783	-0.1191	1189	GBM	PCPG
ENSG00000279348	ENST00000623250	GPX1	ENSG00000233276	ENST00000620890	-0.1191	1189	GBM	PCPG
ENSG00000279348	ENST00000623250	ATP5MF	ENSG00000241468	ENST00000449683	-0.1443	1288	GBM	-
ENSG00000279348	ENST00000623250	ATP5MF	ENSG00000241468	ENST00000359832	-0.1474	1293	GBM	-
ENSG00000279348	ENST00000623250	ATP5MF	ENSG00000241468	ENST00000292475	-0.1474	1293	GBM	-
ENSG00000279348	ENST00000623250	ATP5MF	ENSG00000241468	ENST00000488775	-0.1474	1295	GBM	-
ENSG00000279348	ENST00000623250	ATP5MF	ENSG00000241468	ENST00000394186	-0.6300	134	GBM	-
ENSG00000279348	ENST00000623250	MGST2	ENSG00000085871	ENST00000265498	-0.2057	503	GBM	CHOL
ENSG00000279348	ENST00000623250	HSD17B14	ENSG00000087076	ENST00000263278	-0.1064	1146	-	CHOL
ENSG00000279348	ENST00000623250	HSD17B14	ENSG00000087076	ENST00000596349	-0.1077	1147	-	CHOL
ENSG00000279348	ENST00000623250	HSD17B14	ENSG00000087076	ENST00000599157	-0.1125	731	-	CHOL
ENSG00000279348	ENST00000623250	HSD17B14	ENSG00000087076	ENST00000595764	-0.1217	1618	-	CHOL
ENSG00000279348	ENST00000623250	OCEL1	ENSG00000099330	ENST00000600232	-0.1330	1623	-	CHOL
ENSG00000279348	ENST00000623250	OCEL1	ENSG00000099330	ENST00000595573	-0.1820	1355	-	CHOL
ENSG00000279348	ENST00000623250	OCEL1	ENSG00000099330	ENST00000600826	-0.1330	1627	-	CHOL
ENSG00000279348	ENST00000623250	GSTZ1	ENSG00000100577	ENST00000554279	-0.3950	1184	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	GSTZ1	ENSG00000100577	ENST00000557639	-0.1439	1282	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	GSTZ1	ENSG00000100577	ENST00000349555	-0.1057	1177	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	GSTZ1	ENSG00000100577	ENST00000557053	-0.9217	119	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	FAH	ENSG00000103876	ENST00000261755	-0.1500	1584	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	FAH	ENSG00000103876	ENST00000561421	-0.1370	435	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	FAH	ENSG00000103876	ENST00000539156	-0.1500	1579	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	FAH	ENSG00000103876	ENST00000561353	-0.1577	80	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	FCGRT	ENSG00000104870	ENST00000221466	-0.1188	1285	GBM	CHOL
ENSG00000279348	ENST00000623250	FCGRT	ENSG00000104870	ENST00000426395	-0.1188	1285	GBM	CHOL
ENSG00000279348	ENST00000623250	FCGRT	ENSG00000104870	ENST00000599988	-0.1188	1285	GBM	CHOL
ENSG00000279348	ENST00000623250	FCGRT	ENSG00000104870	ENST00000596975	-0.1188	1289	GBM	CHOL
ENSG00000279348	ENST00000623250	FCGRT	ENSG00000104870	ENST00000598076	-0.1188	1285	GBM	CHOL
ENSG00000279348	ENST00000623250	MT2A	ENSG00000125148	ENST00000245185	-0.1003	1142	GBM	CHOL,PCPG
ENSG00000279348	ENST00000623250	TMEM53	ENSG00000126106	ENST00000372235	-0.2282	1631	-	CHOL
ENSG00000279348	ENST00000623250	ASL	ENSG00000126522	ENST00000380839	-0.1396	1309	-	CHOL
ENSG00000279348	ENST00000623250	ASL	ENSG00000126522	ENST00000395332	-0.4788	504	-	CHOL
ENSG00000279348	ENST00000623250	ASL	ENSG00000126522	ENST00000395331	-0.8400	17	-	CHOL
ENSG00000279348	ENST00000623250	GAMT	ENSG00000130005	ENST00000591788	-0.2041	473	-	CHOL
ENSG00000279348	ENST00000623250	APOE	ENSG00000130203	ENST00000252486	-0.1411	1301	GBM	CHOL,PCPG
ENSG00000279348	ENST00000623250	PEMT	ENSG00000133027	ENST00000461404	-0.1184	1161	-	CHOL
ENSG00000279348	ENST00000623250	CBR1	ENSG00000159228	ENST00000399191	-0.1333	1273	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	SMCO4	ENSG00000166002	ENST00000527149	-0.1962	1327	GBM	CHOL
ENSG00000279348	ENST00000623250	DCXR	ENSG00000169738	ENST00000577532	-0.2569	865	-	CHOL
ENSG00000279348	ENST00000623250	DCXR	ENSG00000169738	ENST00000306869	-0.1969	1125	-	CHOL
ENSG00000279348	ENST00000623250	DCXR	ENSG00000169738	ENST00000579004	-0.2319	84	-	CHOL
ENSG00000279348	ENST00000623250	DCXR	ENSG00000169738	ENST00000581584	-0.1574	1377	-	CHOL
ENSG00000279348	ENST00000623250	DCXR	ENSG00000169738	ENST00000579821	-0.1343	1632	-	CHOL
ENSG00000279348	ENST00000623250	DHRS4L2	ENSG00000187630	ENST00000558753	-0.3026	212	GBM	CHOL
ENSG00000279348	ENST00000623250	DHRS4L2	ENSG00000187630	ENST00000560276	-0.2148	166	GBM	CHOL
ENSG00000279348	ENST00000623250	CD99	ENSG00000002586	ENST00000623253	-0.1844	1320	GBM	-
ENSG00000279348	ENST00000623250	TYROBP	ENSG00000011600	ENST00000589517	-0.8400	774	GBM	-
ENSG00000279348	ENST00000623250	FTL	ENSG00000087086	ENST00000331825	-0.1476	436	GBM	CHOL
ENSG00000279348	ENST00000623250	LGALS1	ENSG00000100097	ENST00000215909	-0.1606	1001	GBM	-
ENSG00000279348	ENST00000623250	LGALS1	ENSG00000100097	ENST00000454173	-0.1354	1097	GBM	-
ENSG00000279348	ENST00000623250	ETHE1	ENSG00000105755	ENST00000600651	-0.1367	1261	GBM	-
ENSG00000279348	ENST00000623250	HSPB1	ENSG00000106211	ENST00000248553	-0.1387	382	GBM	-
ENSG00000279348	ENST00000623250	HSPB1	ENSG00000106211	ENST00000429938	-0.1387	382	GBM	-
ENSG00000279348	ENST00000623250	NAGLU	ENSG00000108784	ENST00000225927	-0.1002	668	GBM	CHOL
ENSG00000279348	ENST00000623250	SLC22A18	ENSG00000110628	ENST00000347936	-0.3177	503	GBM	CHOL
ENSG00000279348	ENST00000623250	SLC22A18	ENSG00000110628	ENST00000312221	-0.3177	503	GBM	CHOL
ENSG00000279348	ENST00000623250	SLC22A18	ENSG00000110628	ENST00000449793	-0.4225	98	GBM	CHOL
ENSG00000279348	ENST00000623250	SLC22A18	ENSG00000110628	ENST00000380574	-0.3177	503	GBM	CHOL
ENSG00000279348	ENST00000623250	TCIRG1	ENSG00000110719	ENST00000265686	-0.1920	1150	GBM	-
ENSG00000279348	ENST00000623250	TCIRG1	ENSG00000110719	ENST00000534673	-0.1382	1000	GBM	-
ENSG00000279348	ENST00000623250	TCIRG1	ENSG00000110719	ENST00000532635	-0.1920	1150	GBM	-
ENSG00000279348	ENST00000623250	TCIRG1	ENSG00000110719	ENST00000530063	-0.2904	955	GBM	-
ENSG00000279348	ENST00000623250	PTPN6	ENSG00000111679	ENST00000535462	-0.1341	1561	GBM	-
ENSG00000279348	ENST00000623250	C1orf54	ENSG00000118292	ENST00000369102	-0.2495	1	GBM	-
ENSG00000279348	ENST00000623250	C1orf54	ENSG00000118292	ENST00000369099	-0.2495	1	GBM	-
ENSG00000279348	ENST00000623250	C1orf54	ENSG00000118292	ENST00000369098	-0.5600	223	GBM	-
ENSG00000279348	ENST00000623250	HCST	ENSG00000126264	ENST00000437550	-0.1422	683	GBM	-
ENSG00000279348	ENST00000623250	GMFG	ENSG00000130755	ENST00000601387	-0.1385	1055	GBM	-
ENSG00000279348	ENST00000623250	GMFG	ENSG00000130755	ENST00000597595	-0.1569	888	GBM	-
ENSG00000279348	ENST00000623250	GMFG	ENSG00000130755	ENST00000596583	-0.1150	1114	GBM	-
ENSG00000279348	ENST00000623250	GMFG	ENSG00000130755	ENST00000595207	-0.1155	1114	GBM	-
ENSG00000279348	ENST00000623250	GMFG	ENSG00000130755	ENST00000600322	-0.1569	893	GBM	-
ENSG00000279348	ENST00000623250	GMFG	ENSG00000130755	ENST00000602185	-0.1196	75	GBM	-
ENSG00000279348	ENST00000623250	GMFG	ENSG00000130755	ENST00000253054	-0.1196	75	GBM	-
ENSG00000279348	ENST00000623250	GMFG	ENSG00000130755	ENST00000601731	-0.1155	1120	GBM	-
ENSG00000279348	ENST00000623250	GMFG	ENSG00000130755	ENST00000594700	-0.1196	75	GBM	-
ENSG00000279348	ENST00000623250	SAT2	ENSG00000141504	ENST00000573566	-0.2000	129	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	EMP3	ENSG00000142227	ENST00000270221	-0.1864	1149	GBM	-
ENSG00000279348	ENST00000623250	EMP3	ENSG00000142227	ENST00000596315	-0.1864	1149	GBM	-
ENSG00000279348	ENST00000623250	EMP3	ENSG00000142227	ENST00000597279	-0.1864	1149	GBM	-
ENSG00000279348	ENST00000623250	TNFRSF14	ENSG00000157873	ENST00000409119	-0.1248	1196	GBM	-
ENSG00000279348	ENST00000623250	ECI1	ENSG00000167969	ENST00000562238	-0.2713	418	GBM	CHOL
ENSG00000279348	ENST00000623250	ECI1	ENSG00000167969	ENST00000570258	-0.4028	1180	GBM	CHOL
ENSG00000279348	ENST00000623250	SMIM4	ENSG00000168273	ENST00000307106	-0.5400	8	GBM	CHOL,PCPG
ENSG00000279348	ENST00000623250	SMIM4	ENSG00000168273	ENST00000476842	-0.1009	1253	GBM	CHOL,PCPG
ENSG00000279348	ENST00000623250	NSMCE1	ENSG00000169189	ENST00000361439	-0.1049	1607	-	PCPG
ENSG00000279348	ENST00000623250	NSMCE1	ENSG00000169189	ENST00000562039	-0.7380	698	-	PCPG
ENSG00000279348	ENST00000623250	NUPR1	ENSG00000176046	ENST00000395641	-0.1462	1262	GBM	CHOL,PCPG
ENSG00000279348	ENST00000623250	CIB1	ENSG00000185043	ENST00000612800	-0.1301	1540	-	PCPG
ENSG00000279348	ENST00000623250	S100A6	ENSG00000197956	ENST00000496817	-0.1660	1402	GBM	-
ENSG00000279348	ENST00000623250	S100A6	ENSG00000197956	ENST00000368719	-0.1660	1402	GBM	-
ENSG00000279348	ENST00000623250	S100A6	ENSG00000197956	ENST00000368720	-0.1660	1402	GBM	-
ENSG00000279348	ENST00000623250	AIF1	ENSG00000204472	ENST00000376059	-0.1038	1535	GBM	-
ENSG00000279348	ENST00000623250	AIF1	ENSG00000204472	ENST00000337917	-0.1038	1535	GBM	-
ENSG00000279348	ENST00000623250	AIF1	ENSG00000204472	ENST00000376049	-0.1038	1535	GBM	-
ENSG00000279348	ENST00000623250	LST1	ENSG00000204482	ENST00000376110	-0.1737	1106	GBM	-
ENSG00000279348	ENST00000623250	LST1	ENSG00000204482	ENST00000339530	-0.1192	1414	GBM	-
ENSG00000279348	ENST00000623250	LST1	ENSG00000204482	ENST00000211921	-0.1192	1414	GBM	-
ENSG00000279348	ENST00000623250	LST1	ENSG00000204482	ENST00000376092	-0.2102	762	GBM	-
ENSG00000279348	ENST00000623250	LST1	ENSG00000204482	ENST00000490742	-0.2320	1548	GBM	-
ENSG00000279348	ENST00000623250	LST1	ENSG00000204482	ENST00000464044	-0.1357	1467	GBM	-
ENSG00000279348	ENST00000623250	H2AJ	ENSG00000246705	ENST00000544848	-0.1470	958	-	PCPG
ENSG00000279348	ENST00000623250	TXNRD2	ENSG00000184470	ENST00000485358	-0.1218	1162	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	TXNRD2	ENSG00000184470	ENST00000462843	-0.1866	422	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	ECH1	ENSG00000104823	ENST00000221418	-0.1125	1576	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	ACADVL	ENSG00000072778	ENST00000543245	-0.1399	1091	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	ACADVL	ENSG00000072778	ENST00000356839	-0.1245	1084	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	ACADVL	ENSG00000072778	ENST00000350303	-0.1399	1093	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	ACADVL	ENSG00000072778	ENST00000542255	-0.1399	1091	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	PSME1	ENSG00000092010	ENST00000206451	-0.1148	1286	GBM	-
ENSG00000279348	ENST00000623250	PSME1	ENSG00000092010	ENST00000559123	-0.1084	1388	GBM	-
ENSG00000279348	ENST00000623250	MYL6	ENSG00000092841	ENST00000548580	-0.1029	101	GBM	-
ENSG00000279348	ENST00000623250	MYL6	ENSG00000092841	ENST00000293422	-0.1029	101	GBM	-
ENSG00000279348	ENST00000623250	MYL6	ENSG00000092841	ENST00000549017	-0.1029	101	GBM	-
ENSG00000279348	ENST00000623250	MYL6	ENSG00000092841	ENST00000549566	-0.2895	1633	GBM	-
ENSG00000279348	ENST00000623250	MYL6	ENSG00000092841	ENST00000547649	-0.1029	101	GBM	-
ENSG00000279348	ENST00000623250	BCL7C	ENSG00000099385	ENST00000215115	-0.3683	661	GBM	-
ENSG00000279348	ENST00000623250	DDT	ENSG00000099977	ENST00000403754	-0.5088	396	-	CHOL
ENSG00000279348	ENST00000623250	DDT	ENSG00000099977	ENST00000430101	-0.1142	1043	-	CHOL
ENSG00000279348	ENST00000623250	TSPO	ENSG00000100300	ENST00000337554	-0.1184	794	GBM	-
ENSG00000279348	ENST00000623250	TSPO	ENSG00000100300	ENST00000583777	-0.1184	795	GBM	-
ENSG00000279348	ENST00000623250	TSPO	ENSG00000100300	ENST00000329563	-0.1235	826	GBM	-
ENSG00000279348	ENST00000623250	TSPO	ENSG00000100300	ENST00000396265	-0.1184	795	GBM	-
ENSG00000279348	ENST00000623250	PSME2	ENSG00000100911	ENST00000560410	-0.2517	1285	GBM	-
ENSG00000279348	ENST00000623250	PSME2	ENSG00000100911	ENST00000216802	-0.2517	1285	GBM	-
ENSG00000279348	ENST00000623250	PSME2	ENSG00000100911	ENST00000615264	-0.2517	1285	GBM	-
ENSG00000279348	ENST00000623250	GSDMD	ENSG00000104518	ENST00000526406	-0.1441	61	GBM	PCPG
ENSG00000279348	ENST00000623250	GSDMD	ENSG00000104518	ENST00000533063	-0.1441	61	GBM	PCPG
ENSG00000279348	ENST00000623250	GSDMD	ENSG00000104518	ENST00000262580	-0.1441	61	GBM	PCPG
ENSG00000279348	ENST00000623250	GALK1	ENSG00000108479	ENST00000592997	-0.1631	1321	GBM	CHOL
ENSG00000279348	ENST00000623250	GALK1	ENSG00000108479	ENST00000588479	-0.2216	130	GBM	CHOL
ENSG00000279348	ENST00000623250	ROMO1	ENSG00000125995	ENST00000374078	-0.3684	695	GBM	-
ENSG00000279348	ENST00000623250	ROMO1	ENSG00000125995	ENST00000374077	-0.3684	695	GBM	-
ENSG00000279348	ENST00000623250	ROMO1	ENSG00000125995	ENST00000374072	-0.1166	783	GBM	-
ENSG00000279348	ENST00000623250	ROMO1	ENSG00000125995	ENST00000336695	-0.1521	1630	GBM	-
ENSG00000279348	ENST00000623250	BCL2L12	ENSG00000126453	ENST00000616144	-0.1082	385	GBM	-
ENSG00000279348	ENST00000623250	BCL2L12	ENSG00000126453	ENST00000619007	-0.1300	385	GBM	-
ENSG00000279348	ENST00000623250	BCL2L12	ENSG00000126453	ENST00000614495	-0.1300	385	GBM	-
ENSG00000279348	ENST00000623250	BCL2L12	ENSG00000126453	ENST00000611631	-0.1006	385	GBM	-
ENSG00000279348	ENST00000623250	BCL2L12	ENSG00000126453	ENST00000441864	-0.1664	49	GBM	-
ENSG00000279348	ENST00000623250	BCL2L12	ENSG00000126453	ENST00000246785	-0.1104	384	GBM	-
ENSG00000279348	ENST00000623250	BCL2L12	ENSG00000126453	ENST00000600947	-0.1331	384	GBM	-
ENSG00000279348	ENST00000623250	BCL2L12	ENSG00000126453	ENST00000246784	-0.1104	384	GBM	-
ENSG00000279348	ENST00000623250	BCL2L12	ENSG00000126453	ENST00000598306	-0.1104	384	GBM	-
ENSG00000279348	ENST00000623250	SEM1	ENSG00000127922	ENST00000417009	-0.2373	1675	GBM	-
ENSG00000279348	ENST00000623250	SDF2L1	ENSG00000128228	ENST00000248958	-0.2714	60	GBM	-
ENSG00000279348	ENST00000623250	MPST	ENSG00000128309	ENST00000401419	-0.1265	859	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	MPST	ENSG00000128309	ENST00000404802	-0.1265	866	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	MPST	ENSG00000128309	ENST00000341116	-0.1265	841	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	MPST	ENSG00000128309	ENST00000429360	-0.1265	838	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	MPST	ENSG00000128309	ENST00000397225	-0.1265	839	-	CHOL,PCPG
ENSG00000279348	ENST00000623250	CD63	ENSG00000135404	ENST00000420846	-0.1081	1349	GBM	-
ENSG00000279348	ENST00000623250	CD63	ENSG00000135404	ENST00000552067	-0.1064	1349	GBM	-
ENSG00000279348	ENST00000623250	CD63	ENSG00000135404	ENST00000548160	-0.1485	1141	GBM	-
ENSG00000279348	ENST00000623250	CD63	ENSG00000135404	ENST00000546939	-0.1485	1141	GBM	-
ENSG00000279348	ENST00000623250	CD63	ENSG00000135404	ENST00000552692	-0.1485	1141	GBM	-
ENSG00000279348	ENST00000623250	CD63	ENSG00000135404	ENST00000549117	-0.1777	1153	GBM	-
ENSG00000279348	ENST00000623250	CD63	ENSG00000135404	ENST00000257857	-0.1891	1350	GBM	-
ENSG00000279348	ENST00000623250	CD63	ENSG00000135404	ENST00000552754	-0.3546	1206	GBM	-
ENSG00000279348	ENST00000623250	CD63	ENSG00000135404	ENST00000550776	-0.6760	1427	GBM	-
ENSG00000279348	ENST00000623250	RPL35	ENSG00000136942	ENST00000373570	-0.1093	1524	GBM	-
ENSG00000279348	ENST00000623250	RPL35	ENSG00000136942	ENST00000348462	-0.2940	970	GBM	-
ENSG00000279348	ENST00000623250	SDSL	ENSG00000139410	ENST00000546672	-0.1679	1244	GBM	CHOL
ENSG00000279348	ENST00000623250	SERF2	ENSG00000140264	ENST00000339624	-0.1920	446	GBM	-
ENSG00000279348	ENST00000623250	SERF2	ENSG00000140264	ENST00000402131	-0.1001	413	GBM	-
ENSG00000279348	ENST00000623250	ANAPC11	ENSG00000141552	ENST00000571570	-0.1091	338	GBM	-
ENSG00000279348	ENST00000623250	ANAPC11	ENSG00000141552	ENST00000572639	-0.1091	338	GBM	-
ENSG00000279348	ENST00000623250	ANAPC11	ENSG00000141552	ENST00000579978	-0.1091	341	GBM	-
ENSG00000279348	ENST00000623250	ANAPC11	ENSG00000141552	ENST00000582222	-0.1211	1569	GBM	-
ENSG00000279348	ENST00000623250	ANAPC11	ENSG00000141552	ENST00000357385	-0.1160	339	GBM	-
ENSG00000279348	ENST00000623250	ANAPC11	ENSG00000141552	ENST00000584314	-0.1057	1537	GBM	-
ENSG00000279348	ENST00000623250	ANAPC11	ENSG00000141552	ENST00000571874	-0.1091	339	GBM	-
ENSG00000279348	ENST00000623250	ANAPC11	ENSG00000141552	ENST00000578550	-0.1868	434	GBM	-
ENSG00000279348	ENST00000623250	ANAPC11	ENSG00000141552	ENST00000577747	-0.1091	339	GBM	-
ENSG00000279348	ENST00000623250	ANAPC11	ENSG00000141552	ENST00000392376	-0.1091	339	GBM	-
ENSG00000279348	ENST00000623250	ANAPC11	ENSG00000141552	ENST00000583839	-0.1091	339	GBM	-
ENSG00000279348	ENST00000623250	ANAPC11	ENSG00000141552	ENST00000578544	-0.1559	1046	GBM	-
ENSG00000279348	ENST00000623250	IFITM3	ENSG00000142089	ENST00000602735	-0.1814	89	GBM	-
ENSG00000279348	ENST00000623250	IFITM3	ENSG00000142089	ENST00000526811	-0.1814	89	GBM	-
ENSG00000279348	ENST00000623250	TRPT1	ENSG00000149743	ENST00000541278	-0.1704	319	GBM	-
ENSG00000279348	ENST00000623250	TRPT1	ENSG00000149743	ENST00000394546	-0.1704	319	GBM	-
ENSG00000279348	ENST00000623250	TRPT1	ENSG00000149743	ENST00000317459	-0.3444	665	GBM	-
ENSG00000279348	ENST00000623250	TRPT1	ENSG00000149743	ENST00000546089	-0.3444	665	GBM	-
ENSG00000279348	ENST00000623250	RHOC	ENSG00000155366	ENST00000369637	-0.1019	1193	GBM	-
ENSG00000279348	ENST00000623250	RHOC	ENSG00000155366	ENST00000369636	-0.1699	1092	GBM	-
ENSG00000279348	ENST00000623250	RHOC	ENSG00000155366	ENST00000369632	-0.5443	1726	GBM	-
ENSG00000279348	ENST00000623250	RHOC	ENSG00000155366	ENST00000528831	-0.1322	1344	GBM	-
ENSG00000279348	ENST00000623250	TAGLN2	ENSG00000158710	ENST00000320307	-0.9912	1177	GBM	-
ENSG00000279348	ENST00000623250	S100A11	ENSG00000163191	ENST00000271638	-0.1026	855	GBM	-
ENSG00000279348	ENST00000623250	TEX264	ENSG00000164081	ENST00000614067	-0.1170	1063	-	PCPG
ENSG00000279348	ENST00000623250	TEX264	ENSG00000164081	ENST00000457573	-0.1170	1063	-	PCPG
ENSG00000279348	ENST00000623250	TEX264	ENSG00000164081	ENST00000611400	-0.1170	1063	-	PCPG
ENSG00000279348	ENST00000623250	TEX264	ENSG00000164081	ENST00000341333	-0.1170	1062	-	PCPG
ENSG00000279348	ENST00000623250	TEX264	ENSG00000164081	ENST00000415259	-0.1170	1102	-	PCPG
ENSG00000279348	ENST00000623250	TEX264	ENSG00000164081	ENST00000395057	-0.1170	1064	-	PCPG
ENSG00000279348	ENST00000623250	BRI3	ENSG00000164713	ENST00000539286	-0.1002	1	GBM	-

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000279348.1	ENST00000623250.1	79	120	359

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential