 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | PRMT5,RNF123,DYNC1I2,ZFPL1,DCAF11,CAPN1,L2HGDH,ILK,DDB1,SMAD1,NDRG2,KBTBD4,THTPA,EIF3L,MPDZ,PIGS,TMED1,LRP10 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000279265 | ENST00000623124 | exon_skip_41813 | chr10:68337857-68337996 | -14.79 | -0.1509 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000279265 | ENST00000623124 | exon_skip_95407 | chr12:95040475-95040597 | -11.15 | -0.1312 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000279265 | ENST00000623124 | exon_skip_370518 | chr22:50247691-50247776 | -10.51 | -0.1420 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000279265 | ENST00000623124 | exon_skip_382458 | chr3:38131595-38131638 | -6.77 | -0.3563 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000279265 | ENST00000623124 | exon_skip_9446 | chr1:147270931-147271005 | -7.20 | -0.1180 | CHD1L | ENST00000369258 | Frame-shift | | ENSG00000279265 | ENST00000623124 | exon_skip_53559 | chr10:101793912-101793998 | -9.04 | -0.2260 | OGA | ENST00000361464 | Frame-shift | | ENSG00000279265 | ENST00000623124 | exon_skip_110959 | chr14:20372732-20372857 | -12.65 | -0.1037 | TEP1 | ENST00000262715 | Frame-shift | | ENSG00000279265 | ENST00000623124 | exon_skip_128982 | chr15:72250844-72250954 | -12.63 | -0.1192 | PARP6 | ENST00000287196,ENST00000569795 | Frame-shift | | ENSG00000279265 | ENST00000623124 | exon_skip_444499 | chr5:138164086-138164133 | -6.43 | -0.1608 | BRD8 | ENST00000254900 | Frame-shift | | ENSG00000279265 | ENST00000623124 | exon_skip_445390 | chr5:150403120-150403312 | -15.05 | -0.1691 | CD74 | ENST00000009530 | In-frame | | ENSG00000279265 | ENST00000623124 | exon_skip_509943 | chrX:47175018-47175092 | -10.04 | -0.1434 | RBM10 | ENST00000377604 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000279265 | ENST00000623124 | L2HGDH | ENSG00000087299 | ENST00000261699 | -0.4742 | 329 | - | KIRC,KIRP | | ENSG00000279265 | ENST00000623124 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.1824 | 202 | - | KIRC,KIRP | | ENSG00000279265 | ENST00000623124 | L2HGDH | ENSG00000087299 | ENST00000555610 | -0.1079 | 77 | - | KIRC,KIRP | | ENSG00000279265 | ENST00000623124 | DCAF11 | ENSG00000100897 | ENST00000558706 | -0.1217 | 62 | - | KIRC | | ENSG00000279265 | ENST00000623124 | NDRG2 | ENSG00000165795 | ENST00000397856 | -0.1571 | 1 | - | KIRC,KIRP,COAD,READ | | ENSG00000279265 | ENST00000623124 | NDRG2 | ENSG00000165795 | ENST00000553593 | -0.2357 | 12 | - | KIRC,KIRP,COAD,READ | | ENSG00000279265 | ENST00000623124 | NDRG2 | ENSG00000165795 | ENST00000555767 | -0.1278 | 150 | - | KIRC,KIRP,COAD,READ | | ENSG00000279265 | ENST00000623124 | NDRG2 | ENSG00000165795 | ENST00000554379 | -0.1213 | 78 | - | KIRC,KIRP,COAD,READ |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000279265.1 | ENST00000623124.1 | 74 | 613 | 837 |
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