 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | BFAR,SOX15,RUVBL1,TFG,STMP1,GRHL2,BNC1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000279117 | ENST00000624624 | exon_skip_33516 | chr1:156938417-156938513 | -17.95 | -0.2163 | ARHGEF11 | ENST00000361409 | In-frame | | ENSG00000279117 | ENST00000624624 | exon_skip_43507 | chr10:84499874-84499959 | -16.11 | -0.2478 | CCSER2 | ENST00000224756 | Frame-shift | | ENSG00000279117 | ENST00000624624 | exon_skip_368285 | chr22:29329711-29329720 | -4.32 | -0.8640 | AP1B1 | ENST00000357586,ENST00000405198 | In-frame | | ENSG00000279117 | ENST00000624624 | exon_skip_436488 | chr5:96726793-96726859 | -9.18 | -0.2040 | CAST | ENST00000341926,ENST00000395813 | In-frame | | ENSG00000279117 | ENST00000624624 | exon_skip_451515 | chr6:41080810-41080897 | -17.02 | -0.2002 | NFYA | ENST00000341376 | In-frame | | ENSG00000279117 | ENST00000624624 | exon_skip_290158 | chr17:42953723-42953778 | -11.16 | -0.2325 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000279117 | ENST00000624624 | exon_skip_445633 | chr5:151110626-151110644 | -6.57 | -0.5973 | ANXA6 | ENST00000354546 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000279117 | ENST00000624624 | exon_skip_44853 | chr10:104010815-104010908 | -11.89 | -0.2015 | SLK | ENST00000369755 | In-frame | | ENSG00000279117 | ENST00000624624 | exon_skip_345955 | chr2:200860124-200860215 | -11.77 | -0.2308 | CLK1 | ENST00000321356 | Frame-shift | | ENSG00000279117 | ENST00000624624 | exon_skip_378912 | chr3:152446703-152446757 | -10.49 | -0.2835 | MBNL1 | ENST00000282486,ENST00000463374 | In-frame | | ENSG00000279117 | ENST00000624624 | exon_skip_456460 | chr6:17771113-17771218 | -20.83 | -0.2104 | KIF13A | ENST00000259711 | In-frame | | ENSG00000279117 | ENST00000624624 | exon_skip_482403 | chr8:27445793-27445919 | -15.95 | -0.1352 | PTK2B | ENST00000346049,ENST00000397501 | In-frame | | ENSG00000279117 | ENST00000624624 | exon_skip_484062 | chr8:73030335-73030395 | -9.70 | -0.1617 | TERF1 | ENST00000276603 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000279117 | hsa-mir-148a | ENST00000624624 | chr11:75261892-75261961 | 189.00 | -65.97 | 68 | NA | | ENSG00000279117 | hsa-mir-148a | ENST00000624624 | chr11:75260660-75260725 | 180.00 | -57.07 | 66 | NA | | ENSG00000279117 | hsa-mir-148a | ENST00000624624 | chr11:75261005-75261087 | 162.00 | -64.00 | 79 | NA | | ENSG00000279117 | hsa-mir-148a | ENST00000624624 | chr11:75261457-75261527 | 161.00 | -63.07 | 69 | NA | | ENSG00000279117 | hsa-mir-148a | ENST00000624624 | chr11:75262291-75262359 | 156.00 | -57.97 | 60 | NA | | ENSG00000279117 | hsa-mir-148a | ENST00000624624 | chr11:75260566-75260628 | 149.00 | -61.08 | 67 | NA | | ENSG00000279117 | hsa-mir-148a | ENST00000624624 | chr11:75261658-75261719 | 149.00 | -55.85 | 66 | NA | | ENSG00000279117 | hsa-mir-148a | ENST00000624624 | chr11:75261267-75261338 | 148.00 | -62.04 | 70 | NA | | ENSG00000279117 | hsa-mir-148a | ENST00000624624 | chr11:75260498-75260563 | 140.00 | -55.83 | 66 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000279117 | ENST00000624624 | RUVBL1 | ENSG00000175792 | ENST00000478892 | -0.2456 | 183 | GBM,ESCA,LUSC,COAD,READ | - | | ENSG00000279117 | ENST00000624624 | STMP1 | ENSG00000243317 | ENST00000509448 | -0.1059 | 1867 | GBM,LUSC | - |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000279117.1 | ENST00000624624.1 | 71 | 376 | 161 |
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