 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | TUBE1,N4BP2L1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_357233 | ENSG00000279108.1 | chr19 | 40841657 | + | TEC | CTC-490E21.11 | ENST00000623128.1 | TEC | CTC-490E21.11-001 | | LncEditing_357235 | ENSG00000279108.1 | chr19 | 40841695 | + | TEC | CTC-490E21.11 | ENST00000623128.1 | TEC | CTC-490E21.11-001 | | LncEditing_357237 | ENSG00000279108.1 | chr19 | 40841706 | + | TEC | CTC-490E21.11 | ENST00000623128.1 | TEC | CTC-490E21.11-001 | | LncEditing_357238 | ENSG00000279108.1 | chr19 | 40841725 | + | TEC | CTC-490E21.11 | ENST00000623128.1 | TEC | CTC-490E21.11-001 | | LncEditing_357239 | ENSG00000279108.1 | chr19 | 40841729 | + | TEC | CTC-490E21.11 | ENST00000623128.1 | TEC | CTC-490E21.11-001 | | LncEditing_357240 | ENSG00000279108.1 | chr19 | 40841738 | + | TEC | CTC-490E21.11 | ENST00000623128.1 | TEC | CTC-490E21.11-001 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000279108 | LncEditing_357235 | LGG | chr19_40841695_+ | 2.238199e+00 | 1.173944e+00 | 1.074143e+00 | 8.614826e+00 | 7.004767e-18 | 1.838426e-17 | UP | | ENSG00000279108 | LncEditing_357237 | LGG | chr19_40841706_+ | 2.173896e+00 | 1.180353e+00 | 1.134991e+00 | 8.470161e+00 | 2.450532e-17 | 6.178841e-17 | UP | | ENSG00000279108 | LncEditing_357238 | LGG | chr19_40841725_+ | 2.263017e+00 | 1.084874e+00 | 9.427563e-01 | 1.159664e+01 | 4.285686e-31 | 2.854429e-30 | UP | | ENSG00000279108 | LncEditing_357239 | LGG | chr19_40841729_+ | 2.403422e+00 | 1.132965e+00 | 9.216708e-01 | 1.032519e+01 | 5.421080e-25 | 2.150159e-24 | UP | | ENSG00000279108 | LncEditing_357233 | THCA | chr19_40841657_+ | 1.810050e+00 | 9.812083e-01 | 1.131992e+00 | 7.950053e+00 | 1.864320e-15 | 4.909912e-15 | UP | | ENSG00000279108 | LncEditing_357235 | THCA | chr19_40841695_+ | 1.850197e+00 | 9.461437e-01 | 1.033541e+00 | 9.606685e+00 | 7.492255e-22 | 3.317223e-21 | UP | | ENSG00000279108 | LncEditing_357237 | THCA | chr19_40841706_+ | 1.739570e+00 | 9.834046e-01 | 1.215253e+00 | 7.591158e+00 | 3.170602e-14 | 7.422368e-14 | UP | | ENSG00000279108 | LncEditing_357238 | THCA | chr19_40841725_+ | 1.724624e+00 | 9.008564e-01 | 1.067336e+00 | 1.107043e+01 | 1.745657e-28 | 1.333246e-27 | UP | | ENSG00000279108 | LncEditing_357239 | THCA | chr19_40841729_+ | 1.695317e+00 | 9.405739e-01 | 1.176551e+00 | 1.002237e+01 | 1.215524e-23 | 6.514783e-23 | UP | | ENSG00000279108 | LncEditing_357237 | CHOL | chr19_40841706_+ | 2.081913e+00 | 9.094399e-01 | 8.369186e-01 | 2.667845e+00 | 7.633939e-03 | 1.350002e-02 | UP | | ENSG00000279108 | LncEditing_357239 | THYM | chr19_40841729_+ | 1.937209e+00 | 9.402135e-01 | 9.588469e-01 | 4.695467e+00 | 2.659980e-06 | 6.553225e-06 | UP | | ENSG00000279108 | LncEditing_357240 | THYM | chr19_40841738_+ | 2.282811e+00 | 9.890852e-01 | 8.287443e-01 | 4.354871e+00 | 1.331455e-05 | 2.754385e-05 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000279108 | LncEditing_357233 | -4.578376e-01 | 3.423524e-04 | 5.394644e-04 | | ENSG00000279108 | LncEditing_357235 | -3.496509e-01 | 2.607274e-03 | 3.098931e-03 | | ENSG00000279108 | LncEditing_357237 | -3.231073e-01 | 1.108947e-02 | 1.176842e-02 | | ENSG00000279108 | LncEditing_357233 | -6.009226e-01 | 2.304141e-02 | 3.320674e-02 | | ENSG00000279108 | LncEditing_357238 | -4.442728e-01 | 9.592734e-03 | 1.918547e-02 | | ENSG00000279108 | LncEditing_357235 | -3.859802e-01 | 1.945780e-03 | 2.270077e-03 | | ENSG00000279108 | LncEditing_357237 | -5.383315e-01 | 5.345646e-06 | 1.667789e-05 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000279108 | ENSG00000074935 | TUBE1 | CHOL,LGG,LIHC,THCA,THYM | | CHOL | | ENSG00000279108 | ENSG00000139597 | N4BP2L1 | CHOL,LGG,LIHC,THCA,THYM | | CHOL |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000279108.1 | ENST00000623128.1 | 45 | 226 | 363 |
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