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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000279095

Summary for AC092066.1

check button Gene summary

Gene informationEnsembl ID

ENSG00000279095

Gene symbol

AC092066.1

Gene name
HGNC
Entrez ID
Gene typeTEC
Synonyms
UniProtAcc

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Structure and expression level for AC092066.1

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002790951.553455e+02-1.177051e+002.804867e-01-4.196459e+002.710000e-051.560700e-04DOWNGBM
ENSG000002790953.439586e+02-1.018146e+001.170292e-01-8.699930e+003.320000e-181.950000e-17DOWNLUSC

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002790953.290148e-012.239313e-15PRAD1.946023e-14

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lncRNA-Protein interaction for AC092066.1

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
Epi result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000279095ENST00000623022AC092066.1ENSG00000127511SIN3B106.2392.0432O75182EpiNA
ENSG00000279095ENST00000623022AC092066.1ENSG00000153922CHD193.8695.2033O14646EpiNA
ENSG00000279095ENST00000623022AC092066.1ENSG00000272333KMT2B61.7295.6208Q9UMN6TF,EpiNA
ENSG00000279095ENST00000623022AC092066.1ENSG00000132382MYBBP1A91.0292.219Q9BQG0EpiNA

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
TF result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000279095ENST00000623022AC092066.1ENSG00000272333KMT2B61.7295.6338Q9UMN6TF,EpiNA

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
RBP result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000279095ENST00000623022AC092066.1ENSG00000134815DHX34101.4294.8019Q14147RBPNA
ENSG00000279095ENST00000623022AC092066.1ENSG00000125676THOC289.4792.2626Q8NI27RBPNA
ENSG00000279095ENST00000623022AC092066.1ENSG00000106263EIF3B79.7192.8154P55884RBPNA
ENSG00000279095ENST00000623022AC092066.1ENSG00000130826DKC125.1690.0048O60832RBPNA

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lncRNA-DNA interaction for AC092066.1

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.
Only predicted by TDF
ARHGEF1,EPOR,SLIRP,STRN4,ZSWIM9,BICD2,ABHD17A,KIFC3,DAPK3,MZF1,QPCTL,KDELR1,MAPK8IP3,SRP19,SUGP2,PPP2R3B,FKRP,NUP62,CTU1,OPA3,LMBR1L,MRPS12,NDUFA11,PFKP,ULK3,KMT2B,SERTAD3,CENATAC,NPEPL1,PUM3,KCTD13,PLPPR2,VASP,MYBBP1A,RECQL4,PAF1,SPRN,SUGP1,TAZ,PPP1R13L,DNAJC2,PPIP5K1,RAB4B,COX19,POLD1,CLK2,BRSK1,CA11,ILKAP,CALM3,DHX34,GPATCH4,CHKB,CEP89,RIC8B,DUSP8,TRIM11,MORC2,WDR83,THOC2,WDR5,ANKRD39,OFD1,IGF1R,ACYP1,PIH1D1,CTU2,CDKN2AIPNL,CFAP298,PLK2,B3GALT6,DDX49,C19orf48,ATP5MK,C3orf62,NEURL1,LPCAT4,ALKBH2,RPL35,ZNF45,LYAR,C12orf73,DDX51,C19orf12,SPOUT1,SAE1,MOAP1,GIGYF1,NOP2,FAM193B,PNKP,P3H4,ARHGAP33,C9orf40,CCDC12,DECR2,STXBP5,SELENOI,PITPNM2,ZNF30,JMJD4,SNX25,SCNM1,FLVCR1,ILF3,LENG8,TLNRD1,B4GALT2,JMJD6,STK11,PPP1R12C,C1orf159,DDX56,PRR3,FAM98C,UBE2G2,BOP1,NDUFB11,EIF2B4,TIMM44,DDX55,SMG5,ARFGAP1,CAPN10,PFDN2,PVR,REXO1,SLC4A3,BAIAP2L1,MAN1B1,FAM71E1,NPDC1,LTO1,METTL1,CCDC106,CCDC137,LAS1L,GGNBP2,NAA10,EP400,YRDC,P4HTM,CABLES2,PCED1A,TBCB,SLC25A22,CHMP2A,MYDGF,GNL2,RAB17,THOC6,PQBP1,LENG1,MBOAT7,MEX3A,TM4SF1,ZNF48,MOGS,FNBP4,ATF4,INPP5E,PTRH2,CLPTM1,EIF3B,TATDN2,KIFC2,TMEM132A,RABEP2,SBNO2,MED29,CDC37,SYT7,KRTCAP2,IDUA,PRMT1,AP3D1,GDI1,KIAA1549,MLLT1,CHD1,LRP11,EME2,PTCD1,NDUFAF2,LRFN1,KHDC4,DCAF15,PDCD2L,SCAMP5,RP9,SFPQ,MIER2,MYO1B,TRMU,MYPOP,CTBP1,BICRA,NFKBIB,ATXN7L2,ZNF598,CHTF18,MSTO1,NAT14,P3H3,TAF1D,TAF4,C1orf35,TIMM13,CDK5RAP1,MARCHF9,BUD23,RDH13,KLHDC4,CCNL2,FBXO46,DMPK,TENT4A,DPH2,CHTOP,SLC52A2,MED25,TP53I13,MC1R,GRWD1,KAT2A,ARMC5,AGO2,SNU13,ANKS6,CSNK1E,TMEM86B,RNPS1,NR2F6,RBM25,FBXW7,JOSD1,FAM50A,STX1A,KIF21A,RTN2,GEMIN7,E2F6,HDAC10,DEAF1,DYNLL2,HSF4,PROSER3,ANKRD54,MEGF8,MTHFD2,KRI1,ZDHHC9,BCL2L12,KRT18,R3HDM2,NR2C2AP,MZT2A,UCK2,HOOK2,ZNF83,POLR1G,HCN3,RAB3A,ZNF3,ZNF8,DNMT3A,BRAT1,BTG3,PSMG3,POLG,C19orf25,IPO4,POLE,EIF5B,KPTN,ZMYND19,GRIPAP1,MTG2,RNF215,TNFRSF12A,NAT9,CRAMP1,LUC7L,TRMT61A,CCAR1,AVEN,MAP2K7,PPAN,DPH7,PGBD5,XRCC1,TRA2A,RNF126,ZMYND8,UBE2M,IARS1,NR2C1,APBB3,RUVBL2,CYTH2,C8orf76,WDR74,TEPSIN,RBM33,RANGAP1,IMMP1L,SRRT,CEBPZ,AGAP6,WRAP73,COA7,TPRA1,ADAMTS10,MAPKBP1,C15orf61,LPCAT1,SLC25A27,SAMD4B,MRPS26,IRF3,PPP1R15A,SERGEF,NDUFA13,PPFIA3,TMEM44,GADD45GIP1,ESF1,SNRPD2,PPP5C,SLC5A6,GBA2,CSAD,KIAA0895L,ATAD3B,NOL10,RBM28,MFSD10,TMEM259,ARPC5L,LIN37,AKT1S1,PHKG2,PMF1,SARS2,NUMBL,RRP1B,PSME4,QSOX2,NT5C3B,PA2G4,KEAP1,KLHL18,GTPBP3,EEF1A2,FAM219A,SNRPB,UFD1,RCN1,MYO19,SURF6,SAMD1,RABAC1,RAPGEFL1,RRP12,ACTR3B,SPHK2,SYNE4,SS18L1,NOCT,TXNL4A,ABL2,SLC7A6,NSUN5,HAUS5,GOLGA3,PSMD8,TELO2,CDAN1,FBXL6,TEDC1,EPOP,DUSP16,PCYOX1L,AUP1,DIRAS1,DEDD2,GSK3A,KLC1,RBM10,TRIM52,RPL36A,CLASRP,STK36,SIPA1L3,GOLGA8B,DNM1,SMG9,TIMM29,YBEY,SPIRE2,ASNS,AARSD1,DNAJC5,MAP2K1,PARP6,RHBDD3,CACNB3,NDUFV3,PIGU,TFPT,ASXL1,DENND4B,FASTK,CYHR1,SIRT6,ANKRD13D,LIG1,CCDC57
Exist in public source
NA

check buttonlncRNA targets the promoter region and positively regulates the gene expression.
Only predicted by TDF
ANKRD39,NPDC1,DPH7,KRT18,YDJC,NOL10,RP9,MSTO1,PDCD2L,MOGS,JOSD1,PLXNA3,CBFA2T2,CA11,HAUS5,JMJD6,CNIH4,DMPK,OPA3,ZNF3,KAT2A,LMBR1L,C11orf84,KEAP1,OXLD1,ZNF30,TRA2A,NFKBIB,CLK2,STX16,TRMU,EPOR,HPRT1,ZMIZ2,XRCC1,IARS,P3H3,PPP1R15A,CBLC,E4F1,KLHDC4,PPP2R1A,DIEXF,C9orf114,THAP7,BCL9,PLK2,RBM10,ZNF83,PIH1D1,TPRA1,TATDN2,PRPF3,ACTR3B,CEP89,CLASRP,LUC7L,MAPK8IP3,SBNO2,SIN3B,MZF1,CSNK1E,FAM219A,C3orf62,FAM160B2,FAM71E1,E2F6,QTRT1,RPSA,TMEM120B,DKC1,FBXO46,P3H4,ZNF45,KIAA0907,TMEM44,C9orf40,EIF5B,NDUFB11,PAF1,TBKBP1,NCLN,CRTC1,RNF126,C14orf80,NAA10,CCDC137,HCN3,GRIPAP1,MOAP1,KPTN,RRP12,FAM98C,R3HDM2,METTL1,CCDC130,AACS,C19orf25,RTN2,SCNM1,MLLT1,ZNF48,SMG9,C21orf59,RPL35,CYTH2,ARPC5L,CLPTM1,ING5,STK36,NR2C2AP,PTCD1,AVEN,SGTA,DPH2,TFPT,MED29,TM4SF1,ZDHHC18,KIAA1549,CAMSAP3,AARSD1,MZT2A,DAPK3,GADD45GIP1,PPP1R12C,RBM6,C8orf76,ALKBH2,ZMYND19,USMG5,TRIM11,FOXK2,CDAN1,TAZ
Exist in public source
NA

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.
Only predicted by TDF
CRYL1,LZIC
Exist in public source
NA

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lncRNA-RNA interaction for AC092066.1

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
ACAA1,CPT2,AKR7A2,NDRG2,LZIC,SNX3
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
lncRNA and exonskipping events positive correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation
ENSG00000279095ENST00000623022exon_skip_423795chr4:55888887-55888932-8.53-0.1896EXOC1ENST00000346134,ENST00000381295In-frame

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000279095ENST00000623022exon_skip_382458chr3:38131595-38131638-9.82-0.2888ACAA1ENST00000333167Frame-shift
ENSG00000279095ENST00000623022exon_skip_377198chr3:123130479-123130616-16.91-0.1566PDIA5ENST00000316218Frame-shift
ENSG00000279095ENST00000623022exon_skip_446758chr5:178212972-178213103-15.26-0.1261PHYKPLENST00000308158Frame-shift

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for AC092066.1

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation
ENSG00000279095ENSG00000052749RRP12ACC,COAD,GBM,KIRC,KIRP,LGG,READ,THYMGBM
ENSG00000279095ENSG00000079313REXO1ACC,GBM,KICH,KIRC,LGGGBM
ENSG00000279095ENSG00000105429MEGF8ACC,CHOL,GBM,LGG,LIHC,OV,PAADGBM
ENSG00000279095ENSG00000105723GSK3AACC,CESC,CHOL,GBM,KICH,KIRC,KIRP,LGG,LIHC,LUAD,OV,PAAD,READ,SARC,UCEC,UCSGBM
ENSG00000279095ENSG00000114923SLC4A3ACC,BRCA,CHOL,GBM,LGG,PAADGBM
ENSG00000279095ENSG00000120256LRP11ACC,GBM,PAAD,READ,UVMGBM
ENSG00000279095ENSG00000125503PPP1R12CACC,GBM,HNSC,KIRC,LGG,LUSC,MESO,OV,SARC,THCAGBM
ENSG00000279095ENSG00000138018SELENOIACC,GBM,MESO,READ,THYM,UVMGBM
ENSG00000279095ENSG00000160014CALM3ACC,CHOL,ESCA,GBM,LGG,OVGBM
ENSG00000279095ENSG00000165943MOAP1ACC,GBM,LGG,PAAD,UVMGBM
ENSG00000279095ENSG00000169032MAP2K1ACC,CHOL,GBM,LGG,UVMGBM
ENSG00000279095ENSG00000177614PGBD5ACC,CHOL,GBM,KIRP,PAADGBM
ENSG00000279095ENSG00000184402SS18L1ACC,GBM,PAAD,READ,UVMGBM
ENSG00000279095ENSG00000184545DUSP8ACC,CHOL,GBM,KICH,LGG,PAAD,THYMGBM
ENSG00000279095ENSG00000067057PFKPBRCA,CHOL,GBM,THYM,UVMGBM
ENSG00000279095ENSG00000128011LRFN1BRCA,CESC,CHOL,GBM,LGG,PRAD,TGCTGBM
ENSG00000279095ENSG00000176490DIRAS1BRCA,GBM,LGG,PAAD,UCSGBM
ENSG00000279095ENSG00000101210EEF1A2CHOL,GBM,LGG,PAAD,UVMGBM
ENSG00000279095ENSG00000106976DNM1CHOL,GBM,LAML,LGG,PAADGBM
ENSG00000279095ENSG00000125744RTN2CHOL,GBM,KIRP,LGG,PAAD,THYMGBM
ENSG00000279095ENSG00000145632PLK2CHOL,GBM,KIRP,LGG,PAADGBM
ENSG00000279095ENSG00000164970FAM219ACHOL,GBM,KICH,KIRP,PAADGBM
ENSG00000279095ENSG00000168781PPIP5K1CHOL,GBM,KICH,LGG,PAAD,PRADGBM
ENSG00000279095ENSG00000187266EPORCHOL,KICH,LUSC,PAAD,THCALUSC
ENSG00000279095ENSG00000198794SCAMP5CHOL,GBM,PAAD,PRAD,THYMGBM
ENSG00000279095ENSG00000264364DYNLL2CHOL,COAD,GBM,PAAD,READGBM
ENSG00000279095ENSG00000273604EPOPCHOL,GBM,PAAD,PRAD,UVMGBM
ENSG00000279095ENSG00000011347SYT7COAD,GBM,LGG,PAAD,READGBM
ENSG00000279095ENSG00000068400GRIPAP1COAD,GBM,KICH,PAAD,UVMGBM
ENSG00000279095ENSG00000179912R3HDM2COAD,GBM,PAAD,READ,UVMGBM
ENSG00000279095ENSG00000185453ZSWIM9COAD,GBM,KICH,LAML,LGG,LIHC,LUSC,OV,PAAD,READ,SARCGBM
ENSG00000279095ENSG00000203772SPRNCOAD,GBM,KIRP,LIHC,PAAD,READ,TGCT,THCA,THYM,UCS,UVMGBM
ENSG00000279095ENSG00000204991SPIRE2COAD,ESCA,GBM,KICH,KIRP,TGCTGBM
ENSG00000279095ENSG00000106089STX1AESCA,GBM,KIRP,LGG,PAAD,UVMGBM
ENSG00000279095ENSG00000107954NEURL1ESCA,GBM,KICH,LGG,PAAD,THYMGBM
ENSG00000279095ENSG00000124839RAB17ESCA,LUSC,PAAD,PRAD,READLUSC
ENSG00000279095ENSG00000087074PPP1R15AGBM,KICH,LGG,LUSC,MESO,THCA,UCSLUSC
ENSG00000279095ENSG00000090615GOLGA3GBM,KICH,KIRC,PAAD,UVMGBM
ENSG00000279095ENSG00000090975PITPNM2GBM,KIRC,MESO,PAAD,UVMGBM
ENSG00000279095ENSG00000100401RANGAP1GBM,KIRP,LGG,LIHC,PRADGBM
ENSG00000279095ENSG00000108352RAPGEFL1GBM,KIRC,LGG,THCA,THYMGBM
ENSG00000279095ENSG00000109670FBXW7GBM,LGG,PAAD,READ,THYM,UVMGBM
ENSG00000279095ENSG00000109762SNX25GBM,LUSC,PAAD,READ,UVMGBM,LUSC
ENSG00000279095ENSG00000136950ARPC5LGBM,KIRP,LGG,LIHC,UVMGBM
ENSG00000279095ENSG00000137802MAPKBP1GBM,KICH,PAAD,THCA,UVMGBM
ENSG00000279095ENSG00000138834MAPK8IP3GBM,KICH,KIRC,LGG,THCA,UVMGBM
ENSG00000279095ENSG00000164506STXBP5GBM,KIRP,LGG,THYM,UVMGBM
ENSG00000279095ENSG00000167535CACNB3GBM,KICH,KIRC,KIRP,LGG,UVMGBM
ENSG00000279095ENSG00000167702KIFC2GBM,KIRC,LGG,UCS,UVMGBM
ENSG00000279095ENSG00000176454LPCAT4GBM,KICH,KIRC,KIRP,LGG,UVMGBM
ENSG00000279095ENSG00000153395LPCAT1KIRP,LUSC,MESO,PAAD,UVMLUSC

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types
ENSG00000279095ENSG00000272333KMT2BENSG00000125741OPA36ACC,CHOL,GBM,KICH,LUAD,PAAD
ENSG00000279095ENSG00000272333KMT2BENSG00000073050XRCC15ACC,COAD,LGG,LUAD,PAAD
ENSG00000279095ENSG00000272333KMT2BENSG00000104859CLASRP8ACC,COAD,GBM,KICH,KIRC,LGG,LUAD,PAAD
ENSG00000279095ENSG00000272333KMT2BENSG00000127511SIN3B5ACC,GBM,KIRC,LGG,PAAD
ENSG00000279095ENSG00000272333KMT2BENSG00000188735TMEM120B6ACC,GBM,KICH,KIRC,LGG,PAAD
ENSG00000279095ENSG00000272333KMT2BENSG00000177051FBXO467COAD,GBM,KICH,KIRC,LGG,LUAD,PAAD
ENSG00000279095ENSG00000272333KMT2BENSG00000105443CYTH25ACC,COAD,GBM,KIRC,LGG

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000279095.1ENST00000623022.1641910