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lncRNA: ENSG00000279041

Summary for CTD-2373N4.3

Gene summary

Gene information	Ensembl ID	ENSG00000279041
	Gene symbol	CTD-2373N4.3
	Gene name
	HGNC
	Entrez ID
	Gene type	TEC
	Synonyms
	UniProtAcc

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Structure and expression level for CTD-2373N4.3

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000279041	2.599081e+02	1.087662e+00	2.127481e-01	5.112441e+00	3.180000e-07	1.500000e-06	UP	KIRP
ENSG00000279041	1.238142e+02	-1.882559e+00	4.014971e-01	-4.688848e+00	2.750000e-06	6.650000e-05	DOWN	ESCA

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000279041	4.453915e-01	2.169889e-03	CHOL	3.235597e-03

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lncRNA-Protein interaction for CTD-2373N4.3

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000128908	INO80	82.42	95.9133	Q9ULG1	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000149311	ATM	80.53	96.9795	Q13315	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000024048	UBR2	76.56	92.6766	Q8IWV8	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000146247	PHIP	76.43	96.6505	Q8WWQ0	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000119778	ATAD2B	68.94	92.6353	Q9ULI0	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000175054	ATR	68.94	95.3951	Q13535	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000196367	TRRAP	68.15	96.6276	Q9Y4A5	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000164080	RAD54L2	66.19	92.5359	Q9Y4B4	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000185658	BRWD1	63.4	97.0239	Q9NSI6	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000101126	ADNP	61.73	94.859	Q9H2P0	TF,Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000263001	GTF2I	61.0	94.2052	P78347	TF,Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000198879	SFMBT2	58.28	94.1248	Q5VUG0	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000124177	CHD6	57.11	90.8956	Q8TD26	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000134852	CLOCK	46.81	93.2453	O15516	TF,Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000162409	PRKAA2	8.52	93.4931	P54646	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000143033	MTF2	5.66	92.758	Q9Y483	TF,Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000080503	SMARCA2	82.94	95.6104	P51531	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000009954	BAZ1B	74.98	91.8095	Q9UIG0	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000080603	SRCAP	73.01	94.2414	Q6ZRS2	TF,Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000147162	OGT	71.13	92.748	O15294	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000163939	PBRM1	65.05	95.2058	Q86U86	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000165288	BRWD3	62.92	96.8683	Q6RI45	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000005339	CREBBP	61.53	90.9919	Q92793	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000100393	EP300	61.16	92.0516	Q09472	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000198919	DZIP3	56.76	94.0987	Q86Y13	RBP,Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000006459	KDM7A	52.63	93.3163	Q6ZMT4	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000186532	SMYD4	48.34	91.4755	Q8IYR2	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000189079	ARID2	45.67	93.2248	Q68CP9	TF,Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000183495	EP400	42.44	96.212	Q96L91	Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000119638	NEK9	35.29	94.1658	Q8TD19	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000080603	SRCAP	73.01	94.2081	Q6ZRS2	TF,Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000124782	RREB1	61.95	95.1396	Q92766	TF	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000101126	ADNP	61.73	94.9229	Q9H2P0	TF,Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000263001	GTF2I	61.0	94.6162	P78347	TF,Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000159140	SON	47.3	96.2948	P18583	TF,RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000134852	CLOCK	46.81	93.2343	O15516	TF,Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000189079	ARID2	45.67	93.4428	Q68CP9	TF,Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000117000	RLF	43.47	92.3978	Q13129	TF	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000257315	ZBED6	37.4	90.801	P86452	TF	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000166432	ZMAT1	25.6	92.7032	Q5H9K5	TF	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000172059	KLF11	11.98	91.0881	O14901	TF	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000068305	MEF2A	11.92	90.2842	Q02078	TF	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000143033	MTF2	5.66	92.0919	Q9Y483	TF,Epi	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000159082	SYNJ1	69.95	96.0943	O43426	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000134698	AGO4	65.78	93.6658	Q9HCK5	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000213079	SCAF8	63.76	96.2136	Q9UPN6	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000129566	TEP1	62.74	96.2308	Q99973	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000114127	XRN1	61.62	96.5738	Q8IZH2	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000106344	RBM28	57.88	91.8846	Q9NW13	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000198919	DZIP3	56.76	94.4263	Q86Y13	RBP,Epi	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000126070	AGO3	56.03	92.9964	Q9H9G7	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000021776	AQR	51.62	96.1873	O60306	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000125676	THOC2	51.6	97.1077	Q8NI27	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000092847	AGO1	48.12	93.507	Q9UL18	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000159140	SON	47.3	96.4174	P18583	TF,RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000100201	DDX17	42.84	93.0919	Q92841	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000123908	AGO2	41.77	93.3235	Q9UKV8	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000135870	RC3H1	41.03	95.7166	Q5TC82	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000244462	RBM12	36.19	91.6547	Q9NTZ6	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000162408	NOL9	35.3	92.4725	Q5SY16	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000129351	ILF3	29.8	95.4768	Q12906	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000215301	DDX3X	16.91	90.4886	O00571	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000111615	KRR1	10.32	91.2968	Q13601	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000111605	CPSF6	9.96	93.1134	Q16630	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000149532	CPSF7	8.86	94.0706	Q8N684	RBP	NA
ENSG00000279041	ENST00000623026	CTD-2373N4.3	ENSG00000172795	DCP2	4.02	94.1985	Q8IU60	RBP	NA

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lncRNA-DNA interaction for CTD-2373N4.3

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CTD-2373N4.3

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CLPP,AP2S1,CFL1,ITPA,SLC25A39,GSTO1,PGLS

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for CTD-2373N4.3

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000279041.1	ENST00000623026.1	156	907	437

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential