 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ARHGEF17,PUM1,CMTM4,STRN4,ERI2,LARS1,USP22,ZSWIM9,CTF1,BICD2,TBC1D24,AMER1,GBF1,GLYR1,DNAJC27,ANAPC1,BRD1,MAST3,CIRBP,ZRANB1,LIG3,IPP,DAPK3,MZF1,C1orf56,MFAP1,ILDR1,DHX38,SIRT3,MAPK8IP3,MID1,CACFD1,SUGP2,FKRP,TXNDC16,DMTF1,RNF34,ZDHHC23,RFC1,ARL2BP,FAM193A,TMEM184C,CRB3,UNKL,OPA3,PIGG,APH1A,PTPRS,FBXL17,UBE4A,SIPA1L1,TRAF7,TOB2,ZBED4,HMGCS1,SLC25A12,ULK3,VPS39,KMT2B,BCL7A,CLUH,GSTCD,LRRC41,GMFB,TULP3,ZFP14,STK16,SAFB2,PPP1R37,KAT6A,KCTD13,SNX12,NOP9,NAPA,NCOA2,TUBGCP6,TIMELESS,SMARCC2,AFF4,MYO9A,STRBP,RNF38,MAEA,KIAA1614,PELI3,USP30,PARG,TSPAN9,RPAP1,ATXN7L3,TPRN,SETD2,RNF40,MYBBP1A,TTC14,BRPF1,KLHL42,CCDC8,SIN3A,CEP72,PPP1R3D,GATD1,SUDS3,GPRASP2,SPG7,PPP1R3E,KDM5A,MIDN,ZFP62,C19orf44,CAPN7,CDC42BPG,BAHD1,FBXO34,NIPA1,STRN3,ANKS1A,ARCN1,PPIP5K1,PJA1,RCCD1,C20orf194,VPS35L,CLK2,GZF1,NCBP1,MYEF2,FAM219B,RGP1,ASH1L,TRIM68,CLOCK,DHX34,CLSTN1,PTAR1,RING1,DNAJC16,TUT4,ATG9A,GRB10,DDB1,CEP89,FAN1,RIC8B,MGRN1,TOP2B,CPSF7,MOCS3,GTF2F1,RIPOR1,DUSP8,TRIM37,MORC2,IKBKG,ACAD10,ZBTB6,TMEM231,MRRF,RABL2A,C3orf18,LLGL2,AKT1,IGF1R,ATP9A,GPR137,PEAK1,FBXO38,RFX7,SLC25A29,UBE2H,FOXJ3,TBC1D9B,PURA,CBX1,HGS,ANO8,NCOA6,MFSD3,GLG1,RAF1,AP1G1,ANKRD11,ARID1A,RAB3GAP2,NAA25,JPT2,PNMA8A,CTDSP2,ZADH2,C19orf54,SETD5,GON4L,TM9SF1,CEP104,CASK,ADCK2,ZBED8,CNOT8,CHD9,STK40,ZNF45,BRAF,RALGAPA2,YTHDC1,COQ7,FAM53C,KCTD2,DDX51,PIGN,AGO3,LPCAT3,FUZ,CADPS2,TMEM185B,SECISBP2L,DCTN5,VGLL4,SBNO1,PHC3,PTPN13,FBXW4,CAMSAP1,TFCP2,RMDN3,VARS2,ZZEF1,DHX35,DHX29,ABHD16A,INTS2,VPS26C,AARS1,SMC1A,LMNTD2,CCDC191,MARVELD2,SEZ6L2,ZFPL1,TSSK6,HIF1AN,TNKS,UQCC1,CTDSPL,FIGNL1,NR2C2,PAN2,SIX5,FAM229A,TASOR,FBXL18,MOAP1,SMARCAD1,GIGYF1,KHNYN,MBTPS1,STAG2,PKN2,BRD2,SLC12A4,COG7,BTBD9,PAQR4,IPO9,METTL4,FITM2,ATG2B,DCLRE1A,NIPAL3,HUWE1,CLCN3,MTMR4,MBTD1,XPO6,ATXN2L,DNASE1,SEPSECS,FBXO21,TNPO2,MAN1A2,TUFM,GAS8,DVL2,DDX42,CCNT1,HIPK1,CEP192,ARHGEF11,SIK3,PIK3C2A,PAFAH1B1,ACSS2,SEC24C,LYSMD1,AHDC1,KAT14,PALB2,PEX10,GOLGA2,INSR,SF3A1,ATF7IP,BRD4,RALBP1,DNAJA3,RCHY1,JKAMP,MARCHF6,BRD3,CES2,EIF4ENIF1,IGSF9,CUL3,LTN1,ABHD8,ZMYM1,RNF214,IQCC,ARHGEF9,AMMECR1L,TMEM168,IPO8,PIK3R4,RAB28,FAM172A,UBN1,FLVCR1,SLC26A11,USP27X,SNX19,MED16,MED14,ILF3,GLI4,CDK13,CAND1,SMG7,CIZ1,LENG8,SH2B1,RANBP3,STK11,PNPLA4,NICN1,UBE2G2,MIB1,INPPL1,CEP68,RSPH3,FAM168B,WDR81,CABIN1,DIP2C,SPICE1,MAFG,LNX2,RELCH,ARMCX4,RSBN1,NPRL3,MAZ,MLLT6,ATG2A,RTL6,CLASP1,EIF2AK3,INO80D,MYO10,ICE2,SMCR8,TRIM65,TMED4,KDM5C,BRCC3,C20orf96,ADGRA3,DDX55,COG8,SMG5,KRIT1,DCAF7,GID8,ZXDA,COG5,BANP,PARD3,ZDHHC7,UNC45A,WDR59,ZNF25,MAML3,MUL1,ATP6V0C,NUBP2,TMEM175,UBR1,NUMA1,PHF12,CHD8,GPN2,PIP5K1C,SLC12A7,LANCL1,TMEM8B,KIAA1143,REXO1,C2CD3,IFT140,UBR4,RAPGEF1,KIF13B,MMP15,PDP2,TMED8,CSNK1D,AP5M1,RELL1,GFOD2,MRM1,XPO4,DDX54,AP2B1,AP1AR,CDK20,DENND11,RAB14,SMG1,BCOR,PKD1,TAF8,PARS2,OSBPL1A,PHC1,RAI1,XIAP,FAM189B,ATP7A,MRPS24,MEPCE,TBL3,PABIR1,TCTA,SEC23B,DNAJB14,PUS7L,NFYC,SLC39A9,MTOR,DCTN1,UTP14C,NUDCD3,ARNT2,BBS2,ZCCHC14,NEK9,TBC1D9,EP400,CPLANE2,NCOR2,LIN54,NFIC,DOHH,RMND5B,UBN2,EXD3,ERCC6L2,DDX6,NOMO2,TRMT2B,KIAA0586,RTF1,TBC1D10B,PPP1R13B,SLC38A10,CABLES2,P4HTM,PATZ1,SEC23IP,ABHD18,LCMT2,PCED1A,REV3L,EVC,OSBP,IWS1,PRR12,SLX4,POLR2A,FOXN3,HIP1,SP2,MECP2,ABHD15,AFDN,ANGEL1,SMYD4,PEX26,ABCA3,SPRYD3,ZFYVE1,NBPF11,UBAP2L,LMF1,RPRD1B,SEC31A,BRF1,ACIN1,ZNF41,LATS1,ARHGAP17,TNRC18,SART3,MAU2,DZIP3,MKNK2,UBOX5,CYB561D1,PAXBP1,MBLAC2,KNOP1,PXMP4,APPL2,MBOAT7,TMEM186,GTF2A1,CEP85,ACACB,INPP5E,NUBPL,KMT2D,BOD1L1,RNF20,SCAP,FAXDC2,RAB33B,TLE2,PNPO,BHLHB9,DENND5B,CHD2,TSTD2,RNF31,FLCN,USP40,MED23,MGAT4B,ATG14,GOLGB1,CLPTM1,ZSWIM1,FIZ1,BAG5,METTL14,KIFC2,LRP3,VPS4B,OTUD4,SPTAN1,ZNF720,PIGO,CBLL1,MIER3,TMCO3,HERC1,POMGNT2,CD2BP2,BTBD7,RABEP2,BCL9L,IBA57,MED29,ANKEF1,SCAF11,RAB11FIP3,SMAD7,STAT6,GGA2,CCDC127,ARHGAP39,C18orf32,DIABLO,ZSWIM8,SLC41A3,EHMT1,HERC3,PITPNA,RAD50,ZNF862,AP5S1,CASKIN2,AKTIP,SBF1,TP53BP1,FAM171A1,TMLHE,ARID4A,SBF2,CDIPT,FXR2,NT5C2,LRBA,FAM171A2,CCDC142,AP3D1,SMAD4,ELP1,PAXIP1,TRAP1,TTC37,RRN3,DMTN,CRAT,SYNE2,MKKS,CBX5,KIF3A,MGAT2,GGT7,UCKL1,TYW1,ABCB6,FAM168A,SYNGAP1,MLLT1,ANKMY2,FANCC,MAML1,GTF3C4,DDR1,MPPE1,HECTD4,EME2,CCDC71,ATP6AP1,EXOC7,ANKFY1,BSDC1,KHDC4,CROCC,PLXNB1,TPR,MIDEAS,PPP1R26,NBPF1,PNISR,SEPTIN8,ACAP3,LRRC27,DDX23,UNC119B,DNAJC9,UBE3B,PANK4,DMXL2,TAF6,ZDHHC1,SINHCAF,LRRC14,NISCH,CCDC97,CLCN7,FBXO9,ABCB10,VAV2,ATAT1,MED17,DNMT1,INVS,PREPL,PI4KA,PLCG1,AFG3L2,RALGAPA1,PBX2,CCDC85C,ZBTB4,CDC42BPA,B3GALNT2,BICRA,WDR11,TGFBRAP1,PKP4,POMT1,ZNF598,DALRD3,TIGD5,KDM3B,IQCE,N4BP2,MED13L,RBM23,NLGN2,VPS51,METTL15,TTC23,CEP250,ARID2,SMG6,TTC5,SEC24B,VPS13B,TJAP1,NEK4,MKS1,TAF4,C9orf64,PLEKHH1,WDTC1,NUP153,TTI1,PIP4P1,SPIN3,COX11,SLX4IP,GABPA,NFKB1,HEATR1,IRF2BPL,RDH13,SDHA,GATAD1,TK2,RUNDC1,TTC30B,TET3,DCAKD,POFUT1,XPC,DHFR2,PDPK1,DMPK,TCAF1,PHKB,PRR14L,EXOC3,PPM1A,CLK3,RNPC3,TOM1L2,ERLIN2,TENT4A,HDAC11,NECAP1,INCA1,VPS9D1,USP10,ATMIN,GFM2,UBXN7,ZER1,MNT,MTMR12,CNOT4,SON,DOP1A,N6AMT1,MRI1,KIAA2026,KANSL3,USP11,KMT2C,MED25,SEMA4C,ALG12,SCAF4,PHF8,TYK2,ZMIZ1,CHST14,MPHOSPH9,HECTD1,POM121C,RAB40B,OSBPL7,UBA1,MAGI1,SCRIB,ZFAND3,PI4KB,EDC4,NDE1,ARMC5,RNF123,NFRKB,ZFP91,ZNF91,CHD6,MID1IP1,UBALD1,DNM2,CTPS2,BRWD1,CNOT1,U2AF2,ANKS6,CHD3,BMPR1A,TRAPPC11,NAPEPLD,PDK2,GDE1,NR2F6,RNPS1,PURB,TUBGCP5,TERF2,PTPN3,DCP1B,SLC7A6OS,TBCK,SLC4A2,DGCR2,TBC1D16,ENDOV,SPATA2,BBS10,KLHL9,ZFP30,MLH3,SP4,SETD6,KANSL1L,POLI,TTC30A,UBR5,SEMA6C,PGAP2,CDC23,CDK16,TRAM1L1,HDHD2,TRIM45,NDOR1,KCTD1,SRRM2,VPS41,HEATR5B,LRRC4B,MIB2,PSKH1,TBL2,PARP3,ZHX3,MEAK7,PANK3,SAP30L,ZNF717,MAP4K5,PHAX,CMTR2,SPNS1,TMEM128,TMC4,HEATR6,DLG5,FBXL20,HEXIM2,DYNLL2,KLC4,CENPC,RBM41,PROSER3,HERC2,ANKS3,CBX4,MAPK7,TUBGCP4,FBXW11,RGL3,MFSD11,PIGQ,PTPN23,UQCRC2,USP19,MEX3D,SGSM2,TMEM201,PRRC2A,MEGF8,PGAP4,POMT2,WIZ,VMAC,SOGA1,NCOR1,TUBA1B,CELF1,PPP4R1,TMEM161B,CCDC121,EPG5,MADD,PRDM2,NFXL1,HLCS,ACTR1B,R3HDM2,QRICH1,FAM160A2,BAZ1B,DEXI,AMBRA1,ZGPAT,ADCY6,HOOK2,RANBP10,MOSMO,HCN3,RAB3A,FCF1,KANSL1,ZNF3,FAM161B,STAU1,TBC1D20,ZMYM3,ZNF8,TMEM245,DNMT3A,DPH1,SNRNP200,CAD,DGKQ,CDS2,TNK1,POLG,RUSF1,KDM2B,FAM161A,FAM234A,SMARCD1,FAM13B,ERBB2,MYO18A,G3BP2,GRIPAP1,STX17,FASTKD5,MARK2,GIN1,WWP2,HELZ,DYM,MINDY1,GTF3C1,ELF2,CRAMP1,EPS15L1,TPGS1,WDR6,PNN,URGCP,CDC14B,LUC7L2,BRD8,GAPVD1,SACM1L,UBE2V1,GSPT1,ARHGAP5,MROH1,COQ9,LRSAM1,SNX13,PMS2,TMEM131,AREL1,SH3BP5L,TMX4,RETREG2,MAPKAPK5,KMT2A,SORT1,NEURL4,HDAC4,KLHL8,PCBD2,MFAP3,NDRG2,IP6K1,APBB3,ADAT1,FBXL14,LTBP3,CYTH2,RAB5B,SOS1,MED24,IRF2BP1,WBP1,JMY,PARP16,RBM33,HCFC1,MED1,ZDHHC21,WDR37,ADD1,SEC22C,LRCH4,TMEM250,NUP133,TIMM21,PRMT5,RBM19,CDC42BPB,SLC25A25,DSTYK,DNAAF2,CS,NELFB,KLHL26,TAF6L,AP3M1,MAPKBP1,SLC29A2,RBM39,GPATCH8,TMEM115,TRIM25,PLEKHA7,SAMD4B,PGS1,MDC1,POT1,STAG1,CLEC16A,ATN1,FAM120B,COQ8B,CKAP5,RNF4,ZNF2,RRNAD1,EIF3C,ZXDC,GAK,VAC14,INTS3,FNDC3A,PDS5A,HSBP1,PPP5C,ZC3H7A,AASDH,GBA2,CSAD,KIAA0895L,PIP4K2C,RILPL1,BAZ2A,ACBD5,ATRX,ABCA2,GEMIN5,ADCY9,RBM28,ZNF74,TUB,RPTOR,OBSL1,BRI3BP,MFN2,C2CD5,LAMA5,TMEM259,POFUT2,NHLRC2,CACTIN,ANKIB1,ZBTB5,CAAP1,SNX29,ZFYVE26,GORASP1,AKT1S1,BECN1,ANKRD42,RECQL5,PTCD2,AKT2,DDX59,KMT2E,BCL2L2,TBC1D17,DCAF16,GOLGA1,ZC3H4,ACVR2B,ERCC2,MORC3,PEX12,RNH1,ITPRIPL2,BCAR1,ARL6,KEAP1,PEX1,PACS2,TRIM3,RAB11FIP2,CALCOCO1,ANKRD52,SPPL3,KAT6B,APAF1,TUSC1,SOS2,MMGT1,LMTK3,CUEDC1,FBXW8,TOGARAM1,FAM217B,SUPT16H,POGZ,GTPBP3,CHTF8,PLEKHH3,TRIM23,RBMX,RBM4B,TECPR2,TSC2,PCNT,N4BP1,CCDC102A,ANAPC2,USP54,RBM14,NOTCH1,ASAP3,ADNP,IL17RD,MAP3K12,NCOA5,MBD1,IKZF4,MYO19,SURF6,ARID1B,PIP4K2B,DCAF5,NF1,PRIMPOL,ERC1,GCN1,BAIAP3,RHBDF1,PRDM4,CAPN15,ANKRD9,SPIN4,TADA2B,THAP9,SMPD4,TENT4B,TIRAP,SPHK2,WDR20,SCAPER,LRP6,EZH1,MRNIP,THAP6,DYRK1B,DCAF1,DDX17,NNT,TMEM129,DGLUCY,KLHL12,SENP7,RSBN1L,ZNF57,FMR1,RAD52,SPRING1,TLE1,ARVCF,EPB41,ASXL2,PTPN21,MARF1,SEC16A,GNPDA2,KIF1C,INO80,CEP290,SDR39U1,TRIP11,NEK1,GCC1,TELO2,CDAN1,SLC24A1,GPALPP1,COX15,MKLN1,UBFD1,C12orf76,PFAS,WDR31,POLL,PPP6R1,VPS52,MED22,SLC25A23,RSPRY1,USP21,ALS2,HEXIM1,CNNM3,NSD2,TRIM52,NFS1,SPIN2B,C6orf47,NLRX1,LPIN2,ZC3HAV1L,MBD6,CCDC93,LMBR1,STK36,SALL2,PATL1,BRPF3,MTX3,SIPA1L3,FBXO31,SAP130,GOLIM4,UBAP2,MCM3AP,HP1BP3,ZW10,LONP1,STRADA,VPS13C,ZFX,LRATD2,RAB3D,VPS35,NAF1,CBR4,PRSS8,USO1,RERE,DIDO1,RABGAP1,FKTN,SETD4,SPIRE2,C1orf109,RFX1,HTT,TYSND1,PIKFYVE,CCNI,GMEB2,CARM1,RAB3GAP1,DNAJC11,AXIN1,ULK2,DNAJC5,NKTR,ESRP2,BCDIN3D,CASZ1,C19orf71,ZNF17,SRCAP,GPRC5B,TTLL3,DOT1L,SDAD1,SLC30A9,RNF169,ZNF84,LDB1,RXRB,CCP110,ARHGEF12,BICRAL,AP5B1,PTPRA,LONP2,C17orf80,BSCL2,PRPF40B,FRYL,NACC1,JMJD1C,KATNIP,TMEM185A,TSC1,FBRS,NGRN,DENND4B,SPG11,COLCA2,DCAF11,MAPK3,MAN2C1,SUCLA2,ITFG1,MRPL38,ASB8,WHAMM,TBC1D5,NELFA,PRPF4B,PIP5K1A,MORC4 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | CMTM4,USP42,TMEM164,TBL3,C16orf72,ATF7IP,GIGYF2,HEXIM1,BIRC6,SBNO1,ERLIN2,TRMT2B,MED14,RFX7,SIRT3,SEZ6L2,LRP5,MED13L,MGAT4B,MAN1A2,PTPN4,MAFG,TOP2B,RASA1,NAA40,ZC3H7B,SMARCA2,DLG5,TBC1D5,DDX6,PTPN23,DHX30,TNRC18,NSD1,PBX2,ULK1,MCF2L,GTPBP3,CMTR2,NCOA6,ATXN7L3,ADGRA3,RAPGEF2,C3orf18,CDK12,ZC3H18,FAM171A2,PNN,MSL1,SLC25A25,SLC12A7,ELF2,AGRN,LONP1,LRRC4B,RALGAPB,ZHX3,BRAF,MED22,CASP8AP2,MED16,DENND4C,MAPK3,SPTBN1,ACVR2B,ACSS2,CEP104,KANSL1L,SIPA1L1,TRIM65,MFSD11,CEP290,SYNGAP1,IQCE,MAZ,USP51,TAF1,FXR2,ANO8,MLLT6,ZFR,DYNLL2,WIPF2,BCL9,NUBP2,YLPM1,ABCA2,SPG11,ARID1A,THAP9,AGPAT3,CLOCK,NCOA2,ACVR2A,LRCH4,ITPRIPL2,XPO6,INTS3,CARM1,AGO4,C17orf80,CAMSAP2,DSTYK,PARD3,HIP1R,TCAF1,MECP2,KMT2A,UNC119B,DCLK2,ARID2,STAU1,FAM179B,CBX4,DDX59,SP4,RPP14,SGPP2,GLTSCR1L,DNAJC14,VEGFA,KCTD7,SEC31A,MFN1,NOL4L,DCP1B,KLHL26,TMEM131,ZBTB4,C1orf109,GGT7,FAM120B,ASH1L,PKD1,GAB1,ADCY6,REV3L,RNF169,PAXBP1,TBC1D9,KIAA2026,SEMA6C,CNOT3,PAPD5,ZADH2,GLYR1,DMTN,TRAPPC10,RAB3D,DNMT1,CRTC1,RNF38,TMEM129,ENGASE,CUL3,MAGI3,WNK1,NUP153,KCTD15,NCOA1,ARFGEF2,B4GALNT4,CSAD,SBF1,PALB2,PRRC2A,SAMD4B,INO80,SECISBP2L,HERC1,BCORL1,THRAP3,NELFCD,CCDC8,KAT6B,MLLT1,MGAT2,FAM63A,NAV2,APBB3,KIF1B,ATXN2L,NF1,IBA57,BCL9L,MED13,BRD4,GNL3L,MIDN,SMG7,NAT8L,SPIN3,NCOR2,KMT2D,RGS12,POMT1,FNBP1L,TRIM25,ILDR1,CEP68,MYH14,MKL2,PHF2,FAM189B,TRAM1L1,SLC35A4,POMT2,FOXK1,PIP4K2C,SPIN4,UBE3B,NAA30,CDC42BPB,BECN1,FAM199X,CASK,USP34,CAMSAP1,EPS15L1,ARHGEF11,CIRBP,LAMA5,PLEKHH3 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| Only predicted by TDF | | ARPC4,RGS10,S100A11,SRGN,GPSM3,GMFG,RPL36AL,CD48,TYROBP,CASP4 | | Exist in public source | | NA |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | RBIS,VAMP8,TRAPPC1,TYROBP,AIF1,TMEM258,UBE2F,RNF181,GMFG,THEMIS2,SLIRP,S100A11,GLRX,RGS10,CD3D,FTL,GSTO1,UCHL3,PET100,LST1,RHOG,CASP4,PFN1,COPS9,NME1,PFDN2,PSMB3,ARPC4,BID,ARHGDIB,SERF2,TPT1,NOP10,RPS13,EVI2B,HCST,TMSB10,RPS8 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000278922 | ENST00000624451 | exon_skip_305660 | chr19:35269802-35270003 | -34.80 | -0.1933 | USF2 | ENST00000222305 | In-frame | | ENSG00000278922 | ENST00000624451 | exon_skip_382439 | chr3:38126161-38126341 | -21.68 | -0.1594 | ACAA1 | ENST00000333167 | In-frame | | ENSG00000278922 | ENST00000624451 | exon_skip_74243 | chr11:65540012-65540153 | -38.19 | -0.3321 | LTBP3 | ENST00000301873 | In-frame | | ENSG00000278922 | ENST00000624451 | exon_skip_51216 | chr10:73819531-73819645 | -24.69 | -0.2204 | CAMK2G | ENST00000423381 | In-frame | | ENSG00000278922 | ENST00000624451 | exon_skip_140155 | chr16:291189-291297 | -20.51 | -0.2385 | AXIN1 | ENST00000262320 | In-frame | | ENSG00000278922 | ENST00000624451 | exon_skip_353131 | chr20:58669290-58669453 | -30.25 | -0.2192 | STX16 | ENST00000371141 | Frame-shift |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000278922 | hsa-mir-150 | ENST00000624451 | chr16:30527359-30527440 | 189.00 | -102.70 | 81 | NA | | ENSG00000278922 | hsa-mir-150 | ENST00000624451 | chr16:30526993-30527079 | 182.00 | -102.77 | 87 | NA | | ENSG00000278922 | hsa-mir-150 | ENST00000624451 | chr16:30527726-30527820 | 159.00 | -88.69 | 94 | NA | | ENSG00000278922 | hsa-mir-150 | ENST00000624451 | chr16:30527504-30527594 | 158.00 | -110.89 | 88 | NA | | ENSG00000278922 | hsa-mir-150 | ENST00000624451 | chr16:30528085-30528172 | 156.00 | -91.26 | 86 | NA | | ENSG00000278922 | hsa-mir-150 | ENST00000624451 | chr16:30527135-30527215 | 147.00 | -105.90 | 81 | NA | | ENSG00000278922 | hsa-mir-150 | ENST00000624451 | chr16:30527865-30527947 | 141.00 | -88.38 | 74 | NA | | ENSG00000278922 | hsa-mir-142 | ENST00000624451 | chr16:30528176-30528287 | 161.00 | -81.17 | 103 | NA | | ENSG00000278922 | hsa-mir-142 | ENST00000624451 | chr16:30527471-30527562 | 156.00 | -94.99 | 92 | NA | | ENSG00000278922 | hsa-mir-142 | ENST00000624451 | chr16:30527980-30528053 | 155.00 | -67.14 | 82 | NA | | ENSG00000278922 | hsa-mir-142 | ENST00000624451 | chr16:30527797-30527868 | 153.00 | -80.12 | 80 | NA | | ENSG00000278922 | hsa-mir-142 | ENST00000624451 | chr16:30527864-30527962 | 148.00 | -79.09 | 97 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000278922 | ENSG00000008710 | PKD1 | ACC,BRCA,CESC,CHOL,GBM,KICH,KIRP,LGG,LUSC,MESO,OV,PRAD,SARC,TGCT,THCA,UVM | KICH | | | ENSG00000278922 | ENSG00000011105 | TSPAN9 | ACC,BRCA,KICH,TGCT,THYM | KICH | | | ENSG00000278922 | ENSG00000013523 | ANGEL1 | ACC,CESC,KICH,PCPG,THYM | KICH | | | ENSG00000278922 | ENSG00000038532 | CLEC16A | ACC,BRCA,CHOL,COAD,GBM,KICH,KIRC,MESO,PCPG,PRAD,READ,SARC,UCS,UVM | KICH | | | ENSG00000278922 | ENSG00000075399 | VPS9D1 | ACC,CHOL,GBM,KICH,KIRC,KIRP,LGG,TGCT | KICH | | | ENSG00000278922 | ENSG00000077454 | LRCH4 | ACC,BRCA,CESC,CHOL,GBM,KICH,LGG,UCS | KICH | | | ENSG00000278922 | ENSG00000092098 | RNF31 | ACC,CESC,CHOL,GBM,KICH,KIRC,KIRP,OV,PCPG,PRAD,SARC,THYM,UCS | KICH | | | ENSG00000278922 | ENSG00000101417 | PXMP4 | ACC,KICH,KIRP,MESO,PCPG,THCA,THYM | KICH | | | ENSG00000278922 | ENSG00000102910 | LONP2 | ACC,BLCA,CESC,GBM,KICH,KIRP,PCPG,SARC,TGCT,THYM | KICH | | | ENSG00000278922 | ENSG00000103148 | NPRL3 | ACC,BRCA,CESC,CHOL,GBM,KICH,KIRP,LAML,LGG,MESO,PRAD,TGCT | KICH | | | ENSG00000278922 | ENSG00000103249 | CLCN7 | ACC,BRCA,CESC,CHOL,GBM,KICH,KIRC,LGG,PCPG,PRAD,THYM | KICH | | | ENSG00000278922 | ENSG00000103264 | FBXO31 | ACC,COAD,GBM,KICH,KIRP,UVM | KICH | | | ENSG00000278922 | ENSG00000103326 | CAPN15 | ACC,BRCA,CESC,CHOL,GBM,KICH,LGG,LUSC,PRAD,READ,TGCT,UVM | KICH | | | ENSG00000278922 | ENSG00000103365 | GGA2 | ACC,KICH,KIRC,OV,SARC,THYM,UCS | KICH | | | ENSG00000278922 | ENSG00000103550 | KNOP1 | ACC,BLCA,BRCA,CESC,CHOL,GBM,KICH,KIRP,LUSC,OV,PRAD,THYM,UCS | KICH | | | ENSG00000278922 | ENSG00000104866 | PPP1R37 | ACC,BRCA,GBM,KICH,LAML,PCPG,PRAD,READ,THCA | KICH | | | ENSG00000278922 | ENSG00000106070 | GRB10 | ACC,CHOL,KICH,THYM,UVM | KICH | | | ENSG00000278922 | ENSG00000111684 | LPCAT3 | ACC,KICH,PCPG,THCA,THYM,UCS | KICH | | | ENSG00000278922 | ENSG00000133597 | ADCK2 | ACC,BRCA,CHOL,KICH,STAD | KICH | | | ENSG00000278922 | ENSG00000133943 | DGLUCY | ACC,CHOL,KICH,KIRC,KIRP,MESO,SARC,THCA | KICH | | | ENSG00000278922 | ENSG00000140320 | BAHD1 | ACC,BLCA,CESC,CHOL,COAD,GBM,KICH,KIRC,KIRP,LAML,LUSC,OV,PCPG,SARC,STAD,THYM,UVM | KICH | | | ENSG00000278922 | ENSG00000140948 | ZCCHC14 | ACC,CESC,CHOL,GBM,KICH,KIRC,KIRP,PCPG,TGCT,THYM,UCS | KICH | | | ENSG00000278922 | ENSG00000145555 | MYO10 | ACC,GBM,KICH,THCA,THYM | KICH | | | ENSG00000278922 | ENSG00000153786 | ZDHHC7 | ACC,CHOL,COAD,GBM,KICH,KIRP,PCPG,READ,TGCT,THYM | KICH | | | ENSG00000278922 | ENSG00000159792 | PSKH1 | ACC,CESC,CHOL,COAD,GBM,KICH,KIRC,KIRP,PCPG,READ,SARC,TGCT,THCA | KICH | | | ENSG00000278922 | ENSG00000162065 | TBC1D24 | ACC,GBM,KICH,KIRC,KIRP,MESO,PCPG,THCA,THYM,UVM | KICH | | | ENSG00000278922 | ENSG00000165209 | STRBP | ACC,CESC,GBM,KICH,KIRP,SARC,UVM | KICH | | | ENSG00000278922 | ENSG00000165861 | ZFYVE1 | ACC,GBM,KICH,KIRC,PCPG,THCA,THYM | KICH | | | ENSG00000278922 | ENSG00000167487 | KLHL26 | ACC,BRCA,CESC,KICH,KIRC,LUSC,PCPG,READ,TGCT,THYM,UVM | KICH | | | ENSG00000278922 | ENSG00000167548 | KMT2D | ACC,CESC,CHOL,GBM,KICH,LUSC,OV,PCPG,SARC,STAD,THYM | KICH | | | ENSG00000278922 | ENSG00000167962 | ZNF598 | ACC,BRCA,CHOL,GBM,KICH,KIRP,LGG,LUSC,MESO,PCPG,PRAD,READ,SKCM,THYM,UVM | KICH | | | ENSG00000278922 | ENSG00000168488 | ATXN2L | ACC,BLCA,BRCA,CESC,CHOL,COAD,GBM,KICH,KIRP,LAML,LGG,LUSC,MESO,OV,PCPG,PRAD,READ,SARC,SKCM,THYM,UCS | KICH | | | ENSG00000278922 | ENSG00000172840 | PDP2 | ACC,BLCA,CESC,CHOL,GBM,KICH,PCPG,THYM,UCS | KICH | | | ENSG00000278922 | ENSG00000174516 | PELI3 | ACC,CHOL,KICH,TGCT,THYM | KICH | | | ENSG00000278922 | ENSG00000177548 | RABEP2 | ACC,BLCA,BRCA,CESC,COAD,GBM,KICH,KIRC,LAML,LUSC,OV | KICH | | | ENSG00000278922 | ENSG00000178188 | SH2B1 | ACC,BLCA,BRCA,CESC,CHOL,COAD,GBM,KICH,KIRC,KIRP,LAML,LGG,LUSC,MESO,OV,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,UCS | KICH | | | ENSG00000278922 | ENSG00000178950 | GAK | ACC,BRCA,COAD,GBM,KICH,KIRC,LGG,PCPG,PRAD,READ | KICH | | | ENSG00000278922 | ENSG00000179832 | MROH1 | ACC,CESC,CHOL,GBM,KICH,KIRC | KICH | | | ENSG00000278922 | ENSG00000182108 | DEXI | ACC,BRCA,KICH,MESO,TGCT,UVM | KICH | | | ENSG00000278922 | ENSG00000184675 | AMER1 | ACC,CESC,KICH,OV,PCPG,SARC,TGCT | KICH | | | ENSG00000278922 | ENSG00000185883 | ATP6V0C | ACC,BRCA,CESC,CHOL,KICH,KIRC,KIRP,PCPG,PRAD,THYM | KICH | | | ENSG00000278922 | ENSG00000188827 | SLX4 | ACC,BRCA,CESC,CHOL,GBM,KICH,KIRP,LGG,LUSC,OV,PCPG,PRAD,READ,SARC,UCS,UVM | KICH | | | ENSG00000278922 | ENSG00000196365 | LONP1 | ACC,GBM,KICH,LGG,LUSC | KICH | | | ENSG00000278922 | ENSG00000196498 | NCOR2 | ACC,BRCA,CESC,CHOL,GBM,KICH,LGG,MESO,OV,PRAD,READ,TGCT,THYM,UCS | KICH | | | ENSG00000278922 | ENSG00000197892 | KIF13B | ACC,KICH,KIRC,TGCT,THYM,UVM | KICH | | | ENSG00000278922 | ENSG00000205730 | ITPRIPL2 | ACC,BLCA,CESC,CHOL,KICH,KIRP,TGCT,THYM,UCS,UVM | KICH | | | ENSG00000278922 | ENSG00000103932 | RPAP1 | BLCA,CESC,CHOL,GBM,KICH,KIRC,KIRP,LGG,LUSC,MESO,OV,PCPG,SARC,THCA,THYM | KICH | | | ENSG00000278922 | ENSG00000141084 | RANBP10 | BLCA,CESC,GBM,KICH,KIRC,KIRP,LGG,SARC,THCA,UCS | KICH | | | ENSG00000278922 | ENSG00000196782 | MAML3 | BLCA,CESC,KICH,OV,PCPG,TGCT,THYM | KICH | | | ENSG00000278922 | ENSG00000007516 | BAIAP3 | BRCA,KICH,KIRC,PRAD,THYM | KICH | | | ENSG00000278922 | ENSG00000079313 | REXO1 | BRCA,CHOL,GBM,KICH,LGG,LUSC,PRAD,READ,SARC,THYM | KICH | | | ENSG00000278922 | ENSG00000103227 | LMF1 | BRCA,GBM,KICH,LAML,MESO,TGCT | KICH | | | ENSG00000278922 | ENSG00000107331 | ABCA2 | BRCA,KICH,KIRP,OV,TGCT,THYM | KICH | | | ENSG00000278922 | ENSG00000129932 | DOHH | BRCA,KICH,KIRC,LAML,LUSC,READ,SKCM,STAD | KICH | | | ENSG00000278922 | ENSG00000142208 | AKT1 | BRCA,CESC,KICH,KIRC,PRAD,READ,TGCT | KICH | | | ENSG00000278922 | ENSG00000160877 | NACC1 | BRCA,GBM,KICH,PRAD,READ | KICH | | | ENSG00000278922 | ENSG00000180900 | SCRIB | BRCA,CESC,CHOL,GBM,KICH,KIRC,LGG,THYM | KICH | | | ENSG00000278922 | ENSG00000182087 | TMEM259 | BRCA,CESC,GBM,KICH,KIRC,LGG,LUSC,PRAD,READ,THCA,UVM | KICH | | | ENSG00000278922 | ENSG00000198680 | TUSC1 | BRCA,KICH,THCA,THYM,UCS | KICH | | | ENSG00000278922 | ENSG00000205517 | RGL3 | BRCA,KICH,KIRC,TGCT,THYM | KICH | | | ENSG00000278922 | ENSG00000100241 | SBF1 | CESC,KICH,KIRC,PRAD,THCA | KICH | | | ENSG00000278922 | ENSG00000105429 | MEGF8 | CESC,CHOL,COAD,GBM,KICH,KIRC,KIRP,LAML,OV,PCPG,TGCT,THCA,THYM,UCEC,UCS | KICH | | | ENSG00000278922 | ENSG00000151276 | MAGI1 | CESC,GBM,KICH,TGCT,THCA,THYM,UCS | KICH | | | ENSG00000278922 | ENSG00000157259 | GATAD1 | CESC,CHOL,KICH,TGCT,THCA,THYM,UCS | KICH | | | ENSG00000278922 | ENSG00000161013 | MGAT4B | CESC,COAD,KICH,LAML,READ,TGCT,THYM | KICH | | | ENSG00000278922 | ENSG00000174669 | SLC29A2 | CESC,GBM,KICH,KIRC,LAML,TGCT,THYM | KICH | | | ENSG00000278922 | ENSG00000183723 | CMTM4 | CESC,CHOL,COAD,GBM,KICH,KIRC,READ,THCA,THYM,UCS,UVM | KICH | | | ENSG00000278922 | ENSG00000196781 | TLE1 | CESC,KICH,SARC,TGCT,THCA,THYM | KICH | | | ENSG00000278922 | ENSG00000197386 | HTT | CESC,CHOL,GBM,KICH,KIRC,OV,PCPG,THYM | KICH | | | ENSG00000278922 | ENSG00000006007 | GDE1 | CHOL,KICH,KIRP,MESO,THYM,UCS,UVM | KICH | | | ENSG00000278922 | ENSG00000071553 | ATP6AP1 | CHOL,KICH,KIRC,TGCT,THYM | KICH | | | ENSG00000278922 | ENSG00000088682 | COQ9 | CHOL,KICH,KIRC,KIRP,LAML,LGG,READ,SARC,THCA | KICH | | | ENSG00000278922 | ENSG00000101346 | POFUT1 | CHOL,KICH,KIRP,PCPG,TGCT,THCA,THYM | KICH | | | ENSG00000278922 | ENSG00000102225 | CDK16 | CHOL,KICH,KIRC,PCPG,PRAD,TGCT | KICH | | | ENSG00000278922 | ENSG00000102996 | MMP15 | CHOL,COAD,KICH,KIRP,READ,THCA | KICH | | | ENSG00000278922 | ENSG00000103043 | VAC14 | CHOL,GBM,KICH,KIRC,PCPG | KICH | | | ENSG00000278922 | ENSG00000125863 | MKKS | CHOL,KICH,KIRP,PCPG,THCA | KICH | | | ENSG00000278922 | ENSG00000127527 | EPS15L1 | CHOL,GBM,KICH,KIRC,PCPG,PRAD,READ,THYM,UVM | KICH | | | ENSG00000278922 | ENSG00000129473 | BCL2L2 | CHOL,KICH,KIRC,PCPG,TGCT,THCA,THYM,UCS | KICH | | | ENSG00000278922 | ENSG00000138617 | PARP16 | CHOL,KICH,LGG,MESO,PCPG,PRAD,STAD,THCA,UVM | KICH | | | ENSG00000278922 | ENSG00000141385 | AFG3L2 | CHOL,KICH,KIRC,KIRP,PCPG,THCA,THYM,UCS,UVM | KICH | | | ENSG00000278922 | ENSG00000156381 | ANKRD9 | CHOL,COAD,GBM,KICH,KIRC,KIRP,READ,SARC,TGCT,THCA,THYM | KICH | | | ENSG00000278922 | ENSG00000157837 | SPPL3 | CHOL,KICH,PCPG,TGCT,THYM | KICH | | | ENSG00000278922 | ENSG00000160439 | RDH13 | CHOL,KICH,KIRP,THCA,THYM | KICH | | | ENSG00000278922 | ENSG00000165458 | INPPL1 | CHOL,GBM,KICH,KIRC,READ,TGCT,THCA,THYM | KICH | | | ENSG00000278922 | ENSG00000168781 | PPIP5K1 | CHOL,KICH,KIRC,KIRP,PCPG,SARC,THYM,UVM | KICH | | | ENSG00000278922 | ENSG00000171105 | INSR | CHOL,KICH,TGCT,THYM,UVM | KICH | | | ENSG00000278922 | ENSG00000177225 | GATD1 | CHOL,KICH,KIRC,LAML,TGCT | KICH | | | ENSG00000278922 | ENSG00000184545 | DUSP8 | CHOL,COAD,KICH,KIRC,THYM | KICH | | | ENSG00000278922 | ENSG00000188493 | C19orf54 | CHOL,GBM,KICH,KIRP,LAML,MESO,READ,THCA | KICH | | | ENSG00000278922 | ENSG00000204991 | SPIRE2 | CHOL,GBM,KICH,LGG,SARC,TGCT | KICH | | | ENSG00000278922 | ENSG00000278259 | MYO19 | CHOL,GBM,KICH,LGG,PCPG,PRAD,SARC,THYM | KICH | | | ENSG00000278922 | ENSG00000099875 | MKNK2 | COAD,GBM,KICH,READ,THYM,UVM | KICH | | | ENSG00000278922 | ENSG00000095321 | CRAT | GBM,KICH,KIRC,KIRP,TGCT,THCA | KICH | | | ENSG00000278922 | ENSG00000205476 | CCDC85C | GBM,KICH,KIRC,MESO,PCPG,READ,TGCT,THYM,UVM | KICH | | | ENSG00000278922 | ENSG00000088280 | ASAP3 | KICH,KIRP,MESO,THCA,THYM | KICH | | | ENSG00000278922 | ENSG00000088543 | C3orf18 | KICH,KIRC,KIRP,TGCT,THCA,UCS | KICH | | | ENSG00000278922 | ENSG00000143409 | MINDY1 | KICH,KIRC,PCPG,TGCT,THCA,THYM | KICH | | | ENSG00000278922 | ENSG00000167191 | GPRC5B | KICH,KIRC,LUSC,OV,STAD,THYM | KICH | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000278922 | ENSG00000084093 | REST | ENSG00000106346 | USP42 | 5 | ACC,CESC,CHOL,KIRP,SARC | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000106346 | USP42 | 6 | CESC,CHOL,GBM,KICH,SARC,THCA | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000183751 | TBL3 | 6 | ACC,BRCA,CHOL,GBM,KICH,LGG | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000171681 | ATF7IP | 5 | ACC,CHOL,GBM,PCPG,SARC | | ENSG00000278922 | ENSG00000198040 | ZNF84 | ENSG00000171681 | ATF7IP | 5 | ACC,GBM,MESO,PCPG,SARC | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000204120 | GIGYF2 | 5 | CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000204120 | GIGYF2 | 6 | CHOL,GBM,KIRC,KIRP,MESO,THYM | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000115760 | BIRC6 | 5 | CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000198040 | ZNF84 | ENSG00000115760 | BIRC6 | 5 | CESC,GBM,LUSC,PCPG,SARC | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000180182 | MED14 | 5 | ACC,CHOL,PCPG,TGCT,UCS | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000123066 | MED13L | 5 | CHOL,GBM,PCPG,SARC,THCA | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000100403 | ZC3H7B | 6 | CESC,CHOL,OV,PRAD,STAD,THCA | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000151208 | DLG5 | 6 | CESC,CHOL,READ,SARC,TGCT,THCA | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000131374 | TBC1D5 | 5 | ACC,CHOL,GBM,KIRP,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000076201 | PTPN23 | 7 | BRCA,CESC,CHOL,GBM,KICH,LGG,PRAD | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000076201 | PTPN23 | 5 | CHOL,GBM,KIRC,KIRP,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000132153 | DHX30 | 9 | BLCA,BRCA,GBM,LAML,LGG,LUSC,OV,PRAD,SARC | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000182095 | TNRC18 | 11 | BRCA,CESC,CHOL,GBM,KICH,LGG,OV,READ,SARC,TGCT,THCA | | ENSG00000278922 | ENSG00000130254 | SAFB2 | ENSG00000182095 | TNRC18 | 7 | BRCA,CHOL,GBM,KIRC,LGG,READ,THCA | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000182095 | TNRC18 | 5 | CHOL,GBM,SARC,THCA,THYM | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000182095 | TNRC18 | 6 | CHOL,GBM,KIRC,KIRP,TGCT,THYM | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000165671 | NSD1 | 5 | CHOL,GBM,SARC,THCA,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000177169 | ULK1 | 6 | BRCA,CHOL,KICH,MESO,PRAD,THCA | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000130299 | GTPBP3 | 9 | BLCA,BRCA,CESC,GBM,KICH,LAML,LGG,LUSC,PRAD | | ENSG00000278922 | ENSG00000130254 | SAFB2 | ENSG00000130299 | GTPBP3 | 7 | BLCA,BRCA,CESC,GBM,LGG,LUSC,PRAD | | ENSG00000278922 | ENSG00000084093 | REST | ENSG00000180917 | CMTR2 | 5 | ACC,CESC,CHOL,KIRP,SARC | | ENSG00000278922 | ENSG00000116731 | PRDM2 | ENSG00000180917 | CMTR2 | 6 | ACC,BLCA,CESC,PCPG,THYM,UCS | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000198646 | NCOA6 | 5 | ACC,CHOL,PCPG,TGCT,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000198646 | NCOA6 | 7 | CHOL,GBM,KICH,KIRP,MESO,PCPG,SARC | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000198646 | NCOA6 | 5 | CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000198646 | NCOA6 | 6 | ACC,CHOL,GBM,KIRP,TGCT,THYM | | ENSG00000278922 | ENSG00000198040 | ZNF84 | ENSG00000198646 | NCOA6 | 5 | ACC,GBM,MESO,PCPG,SARC | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000167258 | CDK12 | 5 | CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000084093 | REST | ENSG00000158545 | ZC3H18 | 5 | ACC,CESC,CHOL,KIRP,SARC | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000158545 | ZC3H18 | 13 | ACC,BLCA,CESC,CHOL,COAD,GBM,KICH,KIRP,LGG,LUSC,PCPG,SARC,THCA | | ENSG00000278922 | ENSG00000130254 | SAFB2 | ENSG00000158545 | ZC3H18 | 8 | CHOL,COAD,GBM,KIRC,LGG,LUSC,READ,SARC | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000109381 | ELF2 | 5 | ACC,CHOL,GBM,PCPG,SARC | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000196365 | LONP1 | 5 | ACC,GBM,KICH,LGG,LUSC | | ENSG00000278922 | ENSG00000116731 | PRDM2 | ENSG00000170471 | RALGAPB | 5 | ACC,BLCA,CESC,PCPG,THYM | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000170471 | RALGAPB | 5 | ACC,CHOL,GBM,KIRP,THYM | | ENSG00000278922 | ENSG00000198040 | ZNF84 | ENSG00000170471 | RALGAPB | 5 | ACC,BLCA,GBM,MESO,PCPG | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000148297 | MED22 | 5 | ACC,GBM,KICH,TGCT,THCA | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000137145 | DENND4C | 5 | ACC,CHOL,GBM,SARC,THYM | | ENSG00000278922 | ENSG00000198040 | ZNF84 | ENSG00000144445 | KANSL1L | 6 | BLCA,CESC,GBM,MESO,PCPG,SARC | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000092931 | MFSD11 | 5 | CHOL,PCPG,TGCT,THYM,UCS | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000147133 | TAF1 | 6 | ACC,CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000198040 | ZNF84 | ENSG00000147133 | TAF1 | 6 | ACC,CESC,GBM,LUSC,PCPG,SARC | | ENSG00000278922 | ENSG00000130254 | SAFB2 | ENSG00000074855 | ANO8 | 6 | BRCA,GBM,LGG,LUSC,PRAD,SARC | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000056097 | ZFR | 5 | ACC,CHOL,PCPG,THYM,UCS | | ENSG00000278922 | ENSG00000116731 | PRDM2 | ENSG00000056097 | ZFR | 5 | ACC,CESC,PCPG,THYM,UCS | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000056097 | ZFR | 5 | ACC,CHOL,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000119596 | YLPM1 | 7 | CESC,CHOL,GBM,OV,PCPG,SARC,THCA | | ENSG00000278922 | ENSG00000116731 | PRDM2 | ENSG00000119596 | YLPM1 | 5 | ACC,CESC,PCPG,THYM,UCS | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000119596 | YLPM1 | 7 | ACC,CHOL,GBM,PCPG,SARC,THCA,THYM | | ENSG00000278922 | ENSG00000084093 | REST | ENSG00000104133 | SPG11 | 5 | ACC,CESC,CHOL,KIRP,SARC | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000104133 | SPG11 | 5 | CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000104133 | SPG11 | 5 | ACC,CHOL,GBM,KIRP,THYM | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000117713 | ARID1A | 5 | ACC,CHOL,PCPG,TGCT,UCS | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000117713 | ARID1A | 11 | ACC,BLCA,CESC,CHOL,GBM,LUSC,MESO,PCPG,SARC,TGCT,THCA | | ENSG00000278922 | ENSG00000116731 | PRDM2 | ENSG00000117713 | ARID1A | 5 | ACC,BLCA,CESC,PCPG,UCS | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000117713 | ARID1A | 5 | CHOL,GBM,PCPG,SARC,THCA | | ENSG00000278922 | ENSG00000198040 | ZNF84 | ENSG00000117713 | ARID1A | 6 | BLCA,GBM,LUSC,MESO,PCPG,SARC | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000168152 | THAP9 | 7 | ACC,CHOL,GBM,PCPG,SARC,THCA,THYM | | ENSG00000278922 | ENSG00000084093 | REST | ENSG00000140396 | NCOA2 | 5 | ACC,CESC,CHOL,KIRP,SARC | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000140396 | NCOA2 | 5 | CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000140396 | NCOA2 | 5 | ACC,CHOL,GBM,KIRP,THYM | | ENSG00000278922 | ENSG00000198040 | ZNF84 | ENSG00000140396 | NCOA2 | 5 | ACC,GBM,MESO,PCPG,SARC | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000077454 | LRCH4 | 5 | BRCA,CESC,CHOL,GBM,KICH | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000205730 | ITPRIPL2 | 5 | ACC,CHOL,TGCT,THYM,UCS | | ENSG00000278922 | ENSG00000116731 | PRDM2 | ENSG00000205730 | ITPRIPL2 | 5 | ACC,BLCA,CESC,THYM,UCS | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000205730 | ITPRIPL2 | 5 | ACC,CHOL,KIRP,TGCT,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000169180 | XPO6 | 11 | ACC,BRCA,CHOL,GBM,KICH,LGG,LUSC,OV,PCPG,READ,THCA | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000143624 | INTS3 | 6 | ACC,CESC,MESO,OV,PCPG,SARC | | ENSG00000278922 | ENSG00000130254 | SAFB2 | ENSG00000143624 | INTS3 | 5 | CESC,GBM,LUSC,SARC,THCA | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000143624 | INTS3 | 5 | GBM,PCPG,SARC,THCA,THYM | | ENSG00000278922 | ENSG00000198040 | ZNF84 | ENSG00000143624 | INTS3 | 6 | CESC,GBM,LUSC,MESO,PCPG,SARC | | ENSG00000278922 | ENSG00000130254 | SAFB2 | ENSG00000130787 | HIP1R | 5 | CHOL,COAD,KIRC,LUSC,READ | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000198420 | TCAF1 | 6 | ACC,CHOL,GBM,SARC,THCA,THYM | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000198420 | TCAF1 | 5 | CHOL,GBM,KIRP,TGCT,THYM | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000118058 | KMT2A | 5 | CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000175970 | UNC119B | 6 | ACC,CESC,CHOL,OV,PCPG,THCA | | ENSG00000278922 | ENSG00000198040 | ZNF84 | ENSG00000189079 | ARID2 | 5 | ACC,CESC,LUSC,PCPG,SARC | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000124214 | STAU1 | 5 | ACC,CHOL,PCPG,TGCT,THYM | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000198718 | TOGARAM1 | 7 | ACC,CHOL,GBM,PCPG,SARC,THCA,THYM | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000198718 | TOGARAM1 | 6 | ACC,CHOL,GBM,KIRP,TGCT,THYM | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000112624 | BICRAL | 5 | ACC,CHOL,GBM,SARC,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000135392 | DNAJC14 | 11 | ACC,BLCA,CESC,CHOL,KIRP,LUSC,MESO,PCPG,STAD,THCA,UCEC | | ENSG00000278922 | ENSG00000116731 | PRDM2 | ENSG00000135392 | DNAJC14 | 5 | ACC,BLCA,CESC,PCPG,THYM | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000135392 | DNAJC14 | 5 | ACC,CHOL,GBM,KIRP,THYM | | ENSG00000278922 | ENSG00000198040 | ZNF84 | ENSG00000135392 | DNAJC14 | 5 | ACC,BLCA,CESC,LUSC,MESO | | ENSG00000278922 | ENSG00000084093 | REST | ENSG00000243335 | KCTD7 | 5 | ACC,CESC,CHOL,KIRP,SARC | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000197183 | NOL4L | 5 | ACC,KIRP,MESO,PCPG,TGCT | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000075568 | TMEM131 | 5 | CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000116539 | ASH1L | 5 | CHOL,PCPG,TGCT,THYM,UCS | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000116539 | ASH1L | 5 | CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000116539 | ASH1L | 5 | CHOL,GBM,MESO,TGCT,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000008710 | PKD1 | 7 | ACC,CESC,CHOL,KICH,KIRP,OV,SARC | | ENSG00000278922 | ENSG00000130254 | SAFB2 | ENSG00000008710 | PKD1 | 5 | BRCA,CHOL,GBM,LUSC,THCA | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000109458 | GAB1 | 5 | ACC,CHOL,TGCT,THYM,UCS | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000174233 | ADCY6 | 5 | CHOL,LGG,OV,PCPG,PRAD | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000088038 | CNOT3 | 7 | CHOL,GBM,KICH,LAML,PCPG,PRAD,THCA | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000121274 | TENT4B | 5 | ACC,CHOL,GBM,PCPG,THCA | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000140632 | GLYR1 | 5 | ACC,CHOL,PCPG,TGCT,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000140632 | GLYR1 | 9 | ACC,BRCA,CESC,CHOL,GBM,KIRP,MESO,PCPG,TGCT | | ENSG00000278922 | ENSG00000116731 | PRDM2 | ENSG00000140632 | GLYR1 | 5 | ACC,CESC,PCPG,THYM,UCS | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000140632 | GLYR1 | 6 | ACC,CHOL,GBM,KIRC,KIRP,THYM | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000160218 | TRAPPC10 | 5 | ACC,CHOL,PCPG,THYM,UCS | | ENSG00000278922 | ENSG00000116731 | PRDM2 | ENSG00000160218 | TRAPPC10 | 5 | ACC,CESC,PCPG,THYM,UCS | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000130816 | DNMT1 | 6 | CESC,CHOL,GBM,PCPG,PRAD,READ | | ENSG00000278922 | ENSG00000130254 | SAFB2 | ENSG00000105662 | CRTC1 | 5 | BRCA,CESC,GBM,PRAD,SARC | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000137075 | RNF38 | 5 | ACC,CHOL,GBM,SARC,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000168936 | TMEM129 | 5 | COAD,GBM,LAML,READ,STAD | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000036257 | CUL3 | 5 | CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000060237 | WNK1 | 5 | ACC,CHOL,PCPG,TGCT,THYM | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000084676 | NCOA1 | 5 | CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000083093 | PALB2 | 5 | ACC,CHOL,PCPG,THYM,UCS | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000204469 | PRRC2A | 6 | CESC,CHOL,GBM,LAML,OV,SARC | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000085185 | BCORL1 | 5 | CHOL,PCPG,SARC,THCA,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000130382 | MLLT1 | 14 | BLCA,BRCA,CESC,CHOL,GBM,KICH,KIRP,LGG,LUSC,PCPG,PRAD,READ,SARC,STAD | | ENSG00000278922 | ENSG00000130254 | SAFB2 | ENSG00000130382 | MLLT1 | 11 | BLCA,BRCA,CESC,CHOL,GBM,LGG,LUSC,PRAD,READ,SARC,THCA | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000130382 | MLLT1 | 5 | CHOL,KIRC,KIRP,TGCT,THYM | | ENSG00000278922 | ENSG00000130254 | SAFB2 | ENSG00000113108 | APBB3 | 5 | BRCA,CESC,GBM,LGG,SARC | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000168488 | ATXN2L | 19 | ACC,BLCA,BRCA,CESC,CHOL,COAD,GBM,KICH,KIRP,LAML,LGG,LUSC,MESO,OV,PCPG,PRAD,READ,SARC,SKCM | | ENSG00000278922 | ENSG00000198040 | ZNF84 | ENSG00000168488 | ATXN2L | 8 | ACC,BLCA,CESC,GBM,LUSC,MESO,PCPG,SARC | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000196712 | NF1 | 5 | CHOL,GBM,KIRP,TGCT,THYM | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000186174 | BCL9L | 5 | ACC,CHOL,PCPG,TGCT,THYM | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000186174 | BCL9L | 5 | ACC,CHOL,GBM,TGCT,THYM | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000108510 | MED13 | 5 | CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000141867 | BRD4 | 7 | CESC,CHOL,GBM,KICH,PCPG,READ,THCA | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000130119 | GNL3L | 5 | CESC,CHOL,GBM,PCPG,THCA | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000130119 | GNL3L | 5 | CHOL,GBM,PCPG,THCA,THYM | | ENSG00000278922 | ENSG00000116731 | PRDM2 | ENSG00000204271 | SPIN3 | 5 | ACC,BLCA,CESC,PCPG,THYM | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000204271 | SPIN3 | 6 | ACC,CHOL,PCPG,SARC,THCA,THYM | | ENSG00000278922 | ENSG00000198040 | ZNF84 | ENSG00000204271 | SPIN3 | 6 | ACC,BLCA,CESC,MESO,PCPG,SARC | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000196498 | NCOR2 | 10 | ACC,BRCA,CESC,CHOL,KICH,LGG,MESO,OV,READ,TGCT | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000196498 | NCOR2 | 5 | CHOL,GBM,MESO,TGCT,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000167548 | KMT2D | 5 | CESC,CHOL,OV,PCPG,STAD | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000167548 | KMT2D | 5 | CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000198040 | ZNF84 | ENSG00000167548 | KMT2D | 5 | CESC,GBM,LUSC,PCPG,SARC | | ENSG00000278922 | ENSG00000116731 | PRDM2 | ENSG00000137942 | FNBP1L | 5 | ACC,BLCA,CESC,PCPG,THYM | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000186260 | MRTFB | 5 | ACC,CHOL,PCPG,THYM,UCS | | ENSG00000278922 | ENSG00000084093 | REST | ENSG00000186260 | MRTFB | 5 | ACC,CESC,CHOL,KIRP,SARC | | ENSG00000278922 | ENSG00000116731 | PRDM2 | ENSG00000186260 | MRTFB | 5 | ACC,CESC,PCPG,THYM,UCS | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000186260 | MRTFB | 6 | ACC,CHOL,PCPG,SARC,THCA,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000197724 | PHF2 | 6 | ACC,BLCA,CESC,CHOL,GBM,SARC | | ENSG00000278922 | ENSG00000116731 | PRDM2 | ENSG00000197724 | PHF2 | 5 | ACC,BLCA,CESC,THYM,UCS | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000164916 | FOXK1 | 5 | CHOL,PCPG,TGCT,THYM,UCS | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000151148 | UBE3B | 5 | CHOL,GBM,KIRC,KIRP,THYM | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000198752 | CDC42BPB | 5 | CESC,CHOL,KICH,PCPG,READ | | ENSG00000278922 | ENSG00000174282 | ZBTB4 | ENSG00000198752 | CDC42BPB | 5 | CHOL,GBM,KIRC,KIRP,THYM | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000123575 | FAM199X | 5 | ACC,CHOL,PCPG,THCA,THYM | | ENSG00000278922 | ENSG00000167232 | ZNF91 | ENSG00000115464 | USP34 | 5 | CHOL,GBM,PCPG,SARC,THYM | | ENSG00000278922 | ENSG00000025293 | PHF20 | ENSG00000132694 | ARHGEF11 | 5 | ACC,CHOL,PCPG,THYM,UCS | | ENSG00000278922 | ENSG00000103495 | MAZ | ENSG00000132694 | ARHGEF11 | 5 | ACC,CESC,CHOL,MESO,THCA | | ENSG00000278922 | ENSG00000116731 | PRDM2 | ENSG00000132694 | ARHGEF11 | 5 | ACC,CESC,PCPG,THYM,UCS |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000278922.1 | ENST00000624451.1 | 148 | 131 | 574 |
|
