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lncRNA: ENSG00000278834

Summary for RP11-458J1.1

Gene summary

Gene information	Ensembl ID	ENSG00000278834
	Gene symbol	RP11-458J1.1
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-458J1.1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000278834	2.132170e+02	-1.072201e+00	1.562964e-01	-6.860050e+00	6.880000e-12	4.910000e-11	DOWN	KICH

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000278834	4.337125e-01	2.916742e-03	CHOL	4.143547e-03
ENSG00000278834	-6.916423e-01	6.182804e-14	KICH	6.229175e-12
ENSG00000278834	-3.089744e-01	2.573342e-05	PAAD	5.801162e-03

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lncRNA-Protein interaction for RP11-458J1.1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000278834	ENST00000619697	RP11-458J1.1	ENSG00000185658	BRWD1	91.55	95.6166	Q9NSI6	Epi	NA
ENSG00000278834	ENST00000619697	RP11-458J1.1	ENSG00000102054	RBBP7	7.24	91.1763	Q16576	Epi	NA
ENSG00000278834	ENST00000619697	RP11-458J1.1	ENSG00000162227	TAF6L	18.86	92.3227	Q9Y6J9	Epi	NA
ENSG00000278834	ENST00000619697	RP11-458J1.1	ENSG00000133895	MEN1	14.45	93.089	O00255	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000278834	ENST00000619697	RP11-458J1.1	ENSG00000135164	DMTF1	96.21	93.286	Q9Y222	TF	NA
ENSG00000278834	ENST00000619697	RP11-458J1.1	ENSG00000204231	RXRB	31.43	93.6263	P28702	TF	NA
ENSG00000278834	ENST00000619697	RP11-458J1.1	ENSG00000025156	HSF2	22.88	92.8686	Q03933	TF	NA
ENSG00000278834	ENST00000619697	RP11-458J1.1	ENSG00000275410	HNF1B	14.65	92.3024	P35680	TF	NA
ENSG00000278834	ENST00000619697	RP11-458J1.1	ENSG00000196378	ZNF34	9.41	93.496	Q8IZ26	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000278834	ENST00000619697	RP11-458J1.1	ENSG00000067596	DHX8	70.46	94.0513	Q14562	RBP	NA
ENSG00000278834	ENST00000619697	RP11-458J1.1	ENSG00000108771	DHX58	46.55	91.3604	Q96C10	RBP	NA
ENSG00000278834	ENST00000619697	RP11-458J1.1	ENSG00000204356	NELFE	14.14	92.6205	P18615	RBP	NA

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lncRNA-DNA interaction for RP11-458J1.1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

GIPC1,COPS7B,ARL16,HELQ,TINF2,TCEA2,DOLK,ZSWIM9,ARFIP2,BOD1,CTF1,PRPSAP2,NUP43,IFT22,TMEM234,C12orf57,IFT52,CIRBP,LIG3,DYNC2LI1,PCGF1,SART1,MZF1,UNK,WDR83OS,C1orf56,DPM2,DYNC2I2,SIRT3,SLC50A1,MAPK8IP3,SRP19,CACFD1,RHNO1,PPP2R3B,TRUB2,DMTF1,HINT2,CCDC47,PHF10,TMEM179B,MIEF2,B3GAT3,APH1A,ZNF24,TRAPPC12,CENPB,LRRC61,LRRC1,NDUFA11,GDAP1,PIGW,BCL7A,PIGX,PLRG1,HS1BP3,PRKAR1B,ZFP14,STK16,RHOT1,CENATAC,NPEPL1,WDR5B,SMUG1,WDR54,DTYMK,APTX,TRAPPC2L,FAM200A,HIRIP3,PPIL3,DEGS2,FAAP20,COMMD2,COMMD7,COA3,GNPAT,ATXN7L3,XXYLT1,COA4,RAB34,UFSP2,SVBP,SPRN,FAM218A,TAZ,NAA80,NABP2,FAM104B,C19orf44,UQCR11,RNF167,PSMD13,GTF2H5,SNX11,USE1,TRIP4,CYB5D2,RCCD1,BNIP1,SDF2,POLDIP2,ERAL1,CLK2,WDR70,UQCC2,CA11,ILKAP,VKORC1,LYRM4,CISD3,POLG2,LYPLAL1,PRCC,RING1,SLC22A17,ENSA,PSENEN,CHKB,PSIP1,IFT81,CEP89,METTL17,MOCS3,FKBPL,TRIM37,DHX58,CBY1,WDR83,OSGEP,USF1,ACAD10,TIMMDC1,AGBL5,ITGB3BP,GABPB1,ORMDL3,TMEM79,H3-3A,LLGL2,DHPS,WASHC3,OFD1,ACYP1,S100A10,PIH1D1,MAP2K4,RASIP1,MIS12,DERL2,CBX1,TSSC4,B3GALT6,PGAP3,LMAN2L,GET1,INO80E,COMT,FANCF,HERPUD2,C4orf46,NBR1,C3orf62,CSNK2B,JPT2,RDH14,C17orf97,ALKBH2,MEA1,RBM22,ANAPC5,ZBED8,BORCS6,ORMDL1,PARL,COQ7,ATP5PD,C22orf39,COQ6,C12orf73,NKAPD1,FUZ,MCM3,PSMB3,C1orf52,CUL9,LGALSL,FBXW4,RASL10B,MLH1,TSEN54,FAM229B,LRRC37B,DHX35,INTS2,MRPS27,MRPL57,PAFAH1B3,LMNTD2,CCDC191,CHST10,DCUN1D2,UBXN2A,TSSK6,EIF2B1,UQCC1,C2orf76,FAM229A,PFDN5,LRTOMT,CCS,PPP1R9B,CCDC167,HMGN3,SCRN3,NDUFB1,THEM4,PNKP,SLC30A6,TMCO6,STK25,COG7,CZIB,CIR1,TSPAN4,MBTD1,HDDC2,DMAC2L,HDAC5,LNP1,BMT2,HEXD,COA6,IFT122,SDHAF2,HDAC8,KLHL23,DVL2,GAS8,RPL23A,ITGB1BP1,DDX42,CASP6,VCPKMT,ANAPC11,CCDC24,SKP1,GABARAP,LYSMD1,CCDC12,KAT14,FAM204A,PTRHD1,SVIP,FDXR,TDRP,EAPP,BUD13,ALKBH3,KIF12,ERCC5,MCRIP1,HSD17B7,ABHD8,ISCA2,IQCC,FBXO4,CASTOR3,ZNF30,SKA2,JMJD4,MRPL52,FAAP100,SCNM1,OARD1,PRADC1,IST1,RAB28,FAM172A,THADA,SLC26A11,IFT57,USP27X,RBBP7,FANCL,DNALI1,GLI4,MRPL55,MED7,B4GALT2,TNFAIP1,RANBP3,SNRNP25,CRIP2,PRR3,FAM98C,NFU1,NICN1,H3-3B,NEK11,RTKN,PPOX,IP6K2,NDUFB11,YWHAE,NDRG3,IFTAP,MLLT6,MORF4L1,SLC37A4,RPL23,FAHD2B,C19orf53,INO80C,MRPL49,TRIM65,COX16,TMED4,BIVM,MRPL28,C20orf96,HSCB,ADPRM,COG8,ARFGAP1,HPF1,CAPN10,SRP68,DCAF7,SMARCB1,ACYP2,APBB1,GCFC2,CTDSP1,C8orf58,SURF1,PLD3,GNPTG,DNAJC8,NUTF2,C11orf68,MRPL10,PHF12,EPN2,GPN2,ACBD6,COMMD9,CLN5,HMGN2,IFT140,CTDNEP1,GMDS,IFT74,CSNK1D,MRPL24,SPACA9,NUDT3,ATXN10,AP2B1,SMPD2,MRM3,TAF7,NPDC1,NAA38,TMCO1,JTB,ANAPC13,TMEM251,CWC15,CCDC106,NFYC,IFT80,BBS2,DHRS13,GGNBP2,NELFE,RNF135,METTL23,AGPAT1,GLT8D1,EXD3,TSN,C17orf75,SBK1,FBXO3,PATZ1,PCED1A,STX8,TUSC2,MVB12A,C11orf98,ELP5,EHMT2,FN3K,CHMP2A,SYCE1L,PPP1R3F,TTC8,UBOX5,PAXBP1,GATB,DNAJC19,SCAMP3,APPL2,LENG1,TMEM186,ZNF48,COA1,KCTD18,DENND6B,PEX11G,ZFYVE19,LRRC56,PRMT7,INPP5E,SYNRG,TRADD,IL11RA,NEK8,NKAP,CETN3,CENPO,USP40,UNC50,SYNGR2,ZSWIM1,VPS28,COMMD1,FIZ1,TRPT1,TATDN2,SUMO2,LTB4R,LRP3,PSPN,NIT1,SERP2,MED19,POMGNT2,ROGDI,CD2BP2,TMEM218,IFT20,PTOV1,PCSK4,MED29,ALKBH4,DMAC1,LDAH,ANKEF1,PYURF,C18orf32,FRS3,NDUFAF5,SGCE,C2orf68,AP4M1,MFF,HMBS,KRTCAP2,PITPNA,IDUA,ARHGEF19,FAM171A1,TMEM134,SREK1IP1,PIGF,POP5,FXR2,SYF2,CRMP1,FAM171A2,ORAI3,SMAD4,TMEM91,NTHL1,CNPY4,CUEDC2,NSL1,RYK,UCKL1,TTC12,FKBP3,CIAPIN1,GSTA4,ABCB6,SCAND1,PSME3IP1,TKFC,SRR,GRK4,UBXN11,CCDC71,NAIF1,B9D1,EXOC7,SSBP3,CROCC,PLXNB1,CERS5,RSAD1,DHRS11,ATPAF2,PLPP5,ARHGEF25,TRIOBP,TMEM59,CCDC51,GLOD4,AMZ2,SPAG7,NUCKS1,ENKD1,TCEAL8,ATP5IF1,VPS72,LRRC14,BLOC1S1,MORN2,C11orf1,DUT,NMNAT3,PREPL,EXO5,RPS27,TRMU,TMEM17,CTBP1,ANGEL2,BICRA,POMT1,PKP4,WASHC2C,STARD3,DALRD3,STMP1,IQCE,ARF5,HES1,CDPF1,TTC23,CEP250,UBTF,TTC5,ODAD4,POMGNT1,DTD2,SRI,SMARCE1,NAT14,KATNBL1,MKS1,MYL12B,DNPH1,C1orf35,HES6,MTIF3,DBR1,KIAA0895,FOXRED1,MARCHF9,DDX52,IFT88,MTX1,ATF6B,PIGC,SLX4IP,NPRL2,AFTPH,EIPR1,TRIP6,RUNDC1,SNX17,TTC30B,DHFR2,DCAKD,ZC4H2,TTC19,CCDC115,EXOC3,CLK3,C14orf28,RPS6KB1,HDAC11,INCA1,ZER1,CHTOP,GALNT18,N6AMT1,MIEN1,KANSL3,USP11,RFNG,DHX57,MLX,TP53I13,COQ4,WDR45,CHST14,COPS9,BPNT1,OSBPL7,DHRS12,PTGFRN,ZMAT5,STX10,FIBP,PI4KB,ALG14,KAT2A,FTSJ3,RAD1,ACBD4,CTPS2,BRWD1,LRRC23,TMEM223,CSTF3,TIGD6,PLA2G6,TERF2,PPP1R7,DCP1B,RHPN1,ENDOV,BBS10,MLH3,PPIE,RBM43,ITPA,BAD,RAMP2,POLI,TTC30A,ELP6,PGAP2,TRAM1L1,ZNF34,TMEM258,ERMARD,KIAA0753,FAM117A,TRIM45,SGSH,PRR36,DCAF17,GEMIN6,E2F6,DOK4,EPC1,EGFL7,C9orf116,GOSR2,MEAK7,CETN2,TMEM128,HEATR6,CNOT11,HDAC10,DEAF1,HEXIM2,CHADL,DYNLL2,KLC4,SCRN2,ATRAID,ANKS3,NOXA1,DPM3,CIAO1,UCK1,SMDT1,MFSD11,GMCL1,ANKRD54,C10orf88,CHID1,RASSF7,CCDC90B,POMT2,RAD51C,LAMTOR1,VMAC,SMARCD2,TMEM139,RNF25,CCDC121,SDCCAG8,RBM45,GAL3ST1,YAE1,ACTR1B,SAC3D1,DYRK4,FAM149B1,VEZT,B3GALT4,RNFT1,JAG1,JUP,METTL6,SPOP,TIA1,MED4,PRUNE1,SAAL1,RETREG3,TMUB2,RPS6KC1,KANSL1,CIAO2B,HNF1B,PCGF2,SLC35B2,AAMDC,CRCP,TMEM68,MRPL27,ERCC3,MEN1,PSMG3,MYL6B,TNK1,SAYSD1,C19orf25,ERBB2,MYG1,VPS33B,DTX3,MTG2,RNF215,ERCC1,ZCCHC10,ABHD14A,PDE6D,SUV39H1,NUDCD2,LSM2,LUC7L,NKIRAS2,COA5,IRF2BP2,BBS4,C14orf93,LRSAM1,SCD5,CBX8,TRA2A,NSMCE4A,RIC8A,RETREG2,DPH5,ORAI2,MRPL43,CEP131,HINFP,PHOSPHO2,XPA,GTF2H3,GPS1,ADAT1,NRIP2,CNTROB,CYTH2,B9D2,MED24,IRF2BP1,SMIM19,TLCD1,RWDD2A,IMMP1L,SSR2,LGALS3BP,FPGT,CEP112,FN3KRP,TMEM97,GEMIN8,TAF6L,CFDP1,TAF9B,TADA1,GPATCH8,TMEM115,MRPS26,ACOT13,PGS1,HDDC3,IRF3,GPANK1,TMEM267,NME7,SERGEF,KDF1,PYGO2,CHCHD5,C7orf50,NRF1,C1orf122,COQ8B,TMEM44,ITFG2,C16orf86,DCTN3,ZNF2,RRNAD1,CCDC92,GBA,COQ5,ZSWIM7,NSRP1,SLC25A11,HSBP1,MPDU1,ERH,RP11-523H20.5,NAGLU,KIAA0895L,PAAF1,MIF4GD,ARV1,SAMD10,OSCP1,ZNHIT2,BANF1,BCL7C,DCAF8,OBSL1,TMEM9,FRA10AC1,COMMD5,NUCB2,CINP,LIN37,PYCR2,B4GAT1,NUP42,IFT27,BECN1,RECQL5,PHKG2,MED28,PMF1,CXorf38,BUD31,PIGM,POLR2J,LRRC75B,C2orf42,SENP3,PTPMT1,RFXANK,SUPT7L,ARL3,FLOT2,RAB13,PEX12,MED31,UBE2D4,TM2D3,CENPT,OSGEPL1,G6PC3,IAH1,RBM4,TRIM3,UROS,SHC2,CFAP410,CUEDC1,DTNB,FAM217B,IMMP2L,NUDT2,NUDT14,CCDC43,IQCD,PSMD3,AKAP10,RBM4B,TMEM99,MRPS31,ANAPC2,BEND5,H2AZ2,NCOA5,ORC4,DCTN2,C12orf43,OGFOD3,SAMD1,PIP4K2B,NF1,GET3,RNASEH2B,PRIMPOL,ODC1,CXXC1,EZH1,LIPT2,MPV17,ELMOD3,TTLL1,PARD6A,GGPS1,GPATCH3,GSTM2,ING4,UBTD2,MRPS33,RHOC,THYN1,CTDSPL2,GNPDA2,CEP290,PRAF2,ACLY,IFT46,EID1,TMEM107,COIL,COX15,STK19,HTRA2,AUP1,C12orf76,AKIP1,FAM228B,WASHC1,SLC39A6,WDR61,USP21,RWDD2B,HEXIM1,TIGD1,RBM10,AP3S2,NDUFC1,NCBP3,THAP3,WDR45B,SPIN2B,CRYZL1,ARMC7,NLRX1,MOSPD3,CLASRP,ATP6V1E2,DEDD,CWC25,STK36,TRAF4,ANKRD16,TTC32,GINM1,SPATA20,COMMD6,COASY,STMN3,SPATA33,TMEM230,GSS,STRADA,CBR4,ZNF18,EIF2D,EMC9,APPBP2,CYP2R1,YBEY,POMZP3,SETD4,STEEP1,CEP41,TPRKB,SPATA24,KLHDC3,NEDD8,TYSND1,TSNAX,PSMC3IP,SPAG16,DUSP28,VPS11,BOLA1,ULK2,GHDC,YPEL3,SAP30BP,RNASEH2C,CNP,BCDIN3D,TRMT61B,C3orf33,NSMCE1,GNG7,RXRB,RHBDD3,TUBD1,GNL1,PDCD6,RNF5,NDUFV3,PTPRA,DGCR6L,NEDD1,PIGU,MDP1,KLHL7,CHMP4B,CRIPT,MRPS14,NGRN,FASTK,SIRT6,TMEM54,DXO,HSPB11,TTC33,LZTR1,MRPL38,ASB8,NELFA,CCDC57,RABL2B,TRAPPC2,SNRPB2,GAA,HINT1,MRFAP1L1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-458J1.1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

NOCT,CAB39,TPST2,LUZP1,HSPA8,LDLR

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000278834	ENST00000619697	exon_skip_84383	chr12:57093406-57093598	-35.96	-0.2128	NAB2	ENST00000300131	In-frame
ENSG00000278834	ENST00000619697	exon_skip_140339	chr16:635611-635774	-26.69	-0.1733	METTL26	ENST00000301686	Frame-shift
ENSG00000278834	ENST00000619697	exon_skip_322579	chr19:55455635-55455845	-25.33	-0.1384	ISOC2	ENST00000425675	In-frame
ENSG00000278834	ENST00000619697	exon_skip_353171	chr20:58898940-58898985	-13.62	-0.5922	GNAS	ENST00000371085,ENST00000371100	In-frame
ENSG00000278834	ENST00000619697	exon_skip_110809	chr14:105449358-105449409	-13.96	-0.4230	MTA1	ENST00000331320	In-frame
ENSG00000278834	ENST00000619697	exon_skip_517627	chrX:154357250-154357274	-6.57	-0.9386	FLNA	ENST00000369850	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000278834	ENST00000619697	exon_skip_371367	chr3:9697710-9697866	-19.46	-0.1324	MTMR14	ENST00000296003	In-frame
ENSG00000278834	ENST00000619697	exon_skip_374375	chr3:49675182-49675309	-18.78	-0.1755	APEH	ENST00000296456	Frame-shift
ENSG00000278834	ENST00000619697	exon_skip_41841	chr10:68756272-68756483	-19.55	-0.1008	CCAR1	ENST00000265872	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000278834	hsa-mir-22	ENST00000619697	chr17:40648829-40648914	190.00	-73.78	88	NA
ENSG00000278834	hsa-mir-22	ENST00000619697	chr17:40648506-40648589	181.00	-80.37	88	NA
ENSG00000278834	hsa-mir-22	ENST00000619697	chr17:40648583-40648678	164.00	-75.83	96	NA
ENSG00000278834	hsa-mir-22	ENST00000619697	chr17:40648904-40648987	162.00	-73.43	79	NA
ENSG00000278834	hsa-mir-22	ENST00000619697	chr17:40649291-40649391	159.00	-74.87	97	NA
ENSG00000278834	hsa-mir-22	ENST00000619697	chr17:40648311-40648394	158.00	-84.17	84	NA
ENSG00000278834	hsa-mir-22	ENST00000619697	chr17:40649505-40649586	147.00	-79.22	85	NA
ENSG00000278834	hsa-mir-22	ENST00000619697	chr17:40648374-40648461	144.00	-93.20	68	NA
ENSG00000278834	hsa-mir-22	ENST00000619697	chr17:40649047-40649132	140.00	-69.96	86	NA
ENSG00000278834	hsa-mir-378a	ENST00000619697	chr17:40648929-40649005	169.00	-64.48	76	NA
ENSG00000278834	hsa-mir-378a	ENST00000619697	chr17:40648864-40648935	167.00	-67.38	63	NA
ENSG00000278834	hsa-mir-378a	ENST00000619697	chr17:40648691-40648767	163.00	-56.69	73	NA
ENSG00000278834	hsa-mir-378a	ENST00000619697	chr17:40648302-40648365	162.00	-63.77	61	NA
ENSG00000278834	hsa-mir-378a	ENST00000619697	chr17:40649374-40649435	157.00	-66.78	63	NA
ENSG00000278834	hsa-mir-378a	ENST00000619697	chr17:40649513-40649581	157.00	-69.14	70	NA
ENSG00000278834	hsa-mir-378a	ENST00000619697	chr17:40649004-40649077	154.00	-63.70	71	NA
ENSG00000278834	hsa-mir-378a	ENST00000619697	chr17:40649076-40649145	153.00	-64.23	67	NA
ENSG00000278834	hsa-mir-378a	ENST00000619697	chr17:40649449-40649519	142.00	-67.89	63	NA
ENSG00000278834	hsa-mir-378a	ENST00000619697	chr17:40648472-40648530	140.00	-60.68	65	NA

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Variants for RP11-458J1.1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000278834	ENSG00000108423	TUBD1	ACC,CHOL,COAD,GBM,KICH,KIRP,LAML,LIHC,LUSC,MESO,PAAD,READ		KICH
ENSG00000278834	ENSG00000108641	B9D1	ACC,CHOL,GBM,KICH,KIRC,KIRP,MESO,PAAD,THCA,THYM,UVM		KICH
ENSG00000278834	ENSG00000109113	RAB34	ACC,CHOL,HNSC,KICH,KIRC,KIRP,MESO,THYM		KICH
ENSG00000278834	ENSG00000114670	NEK11	ACC,CHOL,KICH,KIRP,UCS		KICH
ENSG00000278834	ENSG00000125449	ARMC7	ACC,BLCA,CHOL,DLBC,KICH,KIRC,KIRP,LIHC,TGCT,THCA		KICH
ENSG00000278834	ENSG00000145284	SCD5	ACC,KICH,LAML,LGG,TGCT		KICH
ENSG00000278834	ENSG00000159761	C16orf86	ACC,DLBC,KICH,KIRC,KIRP,LGG,PAAD,PCPG		KICH
ENSG00000278834	ENSG00000160991	ORAI2	ACC,CHOL,KICH,KIRP,PAAD,TGCT,UCS		KICH
ENSG00000278834	ENSG00000173786	CNP	ACC,CHOL,KICH,KIRC,KIRP,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,READ,SKCM,TGCT,UVM		KICH
ENSG00000278834	ENSG00000181513	ACBD4	ACC,BLCA,DLBC,HNSC,KICH,KIRP,LUAD,MESO,OV,PAAD,PCPG,SKCM,TGCT,THCA,UCEC,UVM		KICH
ENSG00000278834	ENSG00000196659	TTC30B	ACC,BLCA,CESC,CHOL,COAD,GBM,HNSC,KICH,LAML,LUSC,MESO,OV,PAAD,PCPG,READ,SKCM,TGCT,THYM,UVM		KICH
ENSG00000278834	ENSG00000121900	TMEM54	BLCA,CHOL,DLBC,KICH,THYM		KICH
ENSG00000278834	ENSG00000130770	ATP5IF1	BLCA,GBM,KICH,KIRC,THCA,THYM,UVM		KICH
ENSG00000278834	ENSG00000138036	DYNC2LI1	BLCA,CHOL,HNSC,KICH,KIRC,KIRP,LAML,LIHC,MESO,PAAD,READ,SARC,TGCT,THYM,UVM		KICH
ENSG00000278834	ENSG00000142632	ARHGEF19	BLCA,DLBC,KICH,TGCT,THCA		KICH
ENSG00000278834	ENSG00000159239	RP11-523H20.5	BLCA,CHOL,DLBC,GBM,KICH,KIRC,KIRP,MESO,PAAD,PCPG,PRAD,SARC,TGCT		KICH
ENSG00000278834	ENSG00000162373	BEND5	BLCA,KICH,PAAD,TGCT,THCA,THYM		KICH
ENSG00000278834	ENSG00000182518	FAM104B	BLCA,CHOL,GBM,HNSC,KICH,KIRP,LGG,LUSC,PAAD,PCPG,PRAD,READ,TGCT		KICH
ENSG00000278834	ENSG00000005448	WDR54	CHOL,GBM,KICH,KIRP,LIHC,MESO,PAAD,PRAD		KICH
ENSG00000278834	ENSG00000087077	TRIP6	CHOL,KICH,TGCT,THCA,THYM		KICH
ENSG00000278834	ENSG00000101384	JAG1	CHOL,KICH,TGCT,THYM,UVM		KICH
ENSG00000278834	ENSG00000110328	GALNT18	CHOL,KICH,PAAD,TGCT,THYM		KICH
ENSG00000278834	ENSG00000112667	DNPH1	CHOL,HNSC,KICH,LGG,TGCT,UVM		KICH
ENSG00000278834	ENSG00000115758	ODC1	CHOL,KICH,KIRC,KIRP,TGCT,UCS		KICH
ENSG00000278834	ENSG00000116885	OSCP1	CHOL,KICH,KIRC,KIRP,PAAD,PRAD,SKCM,TGCT,THYM		KICH
ENSG00000278834	ENSG00000122970	IFT81	CHOL,KICH,KIRP,LAML,PAAD,READ,TGCT,UCS		KICH
ENSG00000278834	ENSG00000128581	IFT22	CHOL,HNSC,KICH,KIRC,KIRP,LIHC,PAAD,THCA,THYM		KICH
ENSG00000278834	ENSG00000132475	H3-3B	CHOL,KICH,KIRC,KIRP,LIHC,READ,TGCT,THYM,UVM		KICH
ENSG00000278834	ENSG00000136883	KIF12	CHOL,KICH,KIRP,LIHC,PAAD,TGCT		KICH
ENSG00000278834	ENSG00000142046	TMEM91	CHOL,KICH,PAAD,TGCT,THCA		KICH
ENSG00000278834	ENSG00000143156	NME7	CHOL,KICH,KIRP,LIHC,READ,TGCT,UVM		KICH
ENSG00000278834	ENSG00000144283	PKP4	CHOL,KICH,LIHC,TGCT,THYM		KICH
ENSG00000278834	ENSG00000148468	FAM171A1	CHOL,KICH,KIRC,KIRP,TGCT		KICH
ENSG00000278834	ENSG00000150433	TMEM218	CHOL,GBM,KICH,KIRC,KIRP,LIHC,OV,TGCT,UCS		KICH
ENSG00000278834	ENSG00000155366	RHOC	CHOL,DLBC,KICH,PRAD,THYM		KICH
ENSG00000278834	ENSG00000158062	UBXN11	CHOL,KICH,KIRP,PAAD,THCA		KICH
ENSG00000278834	ENSG00000160345	C9orf116	CHOL,KICH,KIRP,PAAD,TGCT,THCA		KICH
ENSG00000278834	ENSG00000161328	LRRC56	CHOL,KICH,KIRP,PAAD,THCA		KICH
ENSG00000278834	ENSG00000163879	DNALI1	CHOL,KICH,KIRP,PAAD,TGCT		KICH
ENSG00000278834	ENSG00000163913	IFT122	CHOL,HNSC,KICH,KIRP,PAAD		KICH
ENSG00000278834	ENSG00000164050	PLXNB1	CHOL,KICH,KIRC,KIRP,PAAD,TGCT,THYM		KICH
ENSG00000278834	ENSG00000164542	KIAA0895	CHOL,KICH,KIRP,PAAD,READ		KICH
ENSG00000278834	ENSG00000165698	SPACA9	CHOL,DLBC,KICH,KIRC,KIRP,LIHC,PAAD		KICH
ENSG00000278834	ENSG00000166578	IQCD	CHOL,KICH,KIRC,KIRP,PAAD,THYM		KICH
ENSG00000278834	ENSG00000168350	DEGS2	CHOL,KICH,KIRC,TGCT,THCA		KICH
ENSG00000278834	ENSG00000178026	LRRC75B	CHOL,DLBC,KICH,KIRP,LGG,TGCT,THYM,UVM		KICH
ENSG00000278834	ENSG00000178826	TMEM139	CHOL,KICH,KIRP,LIHC,TGCT		KICH
ENSG00000278834	ENSG00000186889	TMEM17	CHOL,GBM,KICH,KIRC,KIRP,LAML,PAAD,THYM,UVM		KICH
ENSG00000278834	ENSG00000187535	IFT140	CHOL,KICH,KIRC,KIRP,MESO,TGCT,THYM		KICH
ENSG00000278834	ENSG00000188010	MORN2	CHOL,GBM,KICH,KIRP,LIHC,MESO,PAAD,SKCM,TGCT,THCA,THYM,UVM		KICH
ENSG00000278834	ENSG00000197557	TTC30A	CHOL,COAD,GBM,KICH,LUSC,MESO,OV,PAAD,READ,SKCM,THYM,UVM		KICH
ENSG00000278834	ENSG00000204308	RNF5	CHOL,GBM,KICH,LGG,LIHC		KICH
ENSG00000278834	ENSG00000205593	DENND6B	CHOL,KICH,KIRP,PAAD,SARC,TGCT,THCA		KICH
ENSG00000278834	ENSG00000206053	JPT2	CHOL,KICH,KIRP,LIHC,THYM		KICH
ENSG00000278834	ENSG00000219626	FAM228B	CHOL,KICH,KIRP,PAAD,TGCT,THYM,UCEC		KICH
ENSG00000278834	ENSG00000240771	ARHGEF25	CHOL,KICH,KIRP,MESO,TGCT		KICH
ENSG00000278834	ENSG00000174292	TNK1	DLBC,KICH,KIRC,KIRP,TGCT		KICH
ENSG00000278834	ENSG00000109084	TMEM97	GBM,KICH,KIRC,LAML,LGG,LUSC		KICH
ENSG00000278834	ENSG00000138175	ARL3	GBM,KICH,KIRC,KIRP,LIHC,PAAD,TGCT		KICH
ENSG00000278834	ENSG00000151778	SERP2	GBM,KICH,KIRC,KIRP,LGG,PAAD,THCA		KICH
ENSG00000278834	ENSG00000162813	BPNT1	GBM,KICH,LAML,LGG,MESO,TGCT,UVM		KICH
ENSG00000278834	ENSG00000170899	GSTA4	GBM,KICH,KIRP,LGG,PAAD,TGCT		KICH
ENSG00000278834	ENSG00000203778	FAM229B	GBM,HNSC,KICH,KIRC,KIRP,PAAD,TGCT,THCA		KICH
ENSG00000278834	ENSG00000206535	LNP1	GBM,KICH,KIRP,MESO,PAAD,TGCT		KICH
ENSG00000278834	ENSG00000032742	IFT88	KICH,MESO,PAAD,TGCT,UVM		KICH
ENSG00000278834	ENSG00000055211	GINM1	KICH,READ,TGCT,UCS,UVM		KICH
ENSG00000278834	ENSG00000105538	RASIP1	KICH,PAAD,THCA,THYM,UCS		KICH
ENSG00000278834	ENSG00000124006	OBSL1	KICH,KIRP,LGG,PAAD,TGCT,THCA		KICH
ENSG00000278834	ENSG00000127990	SGCE	KICH,KIRP,PAAD,TGCT,UVM		KICH
ENSG00000278834	ENSG00000172889	EGFL7	KICH,PAAD,SARC,THCA,THYM		KICH
ENSG00000278834	ENSG00000174599	TRAM1L1	KICH,KIRC,LGG,PAAD,SKCM,TGCT,UCS,UVM		KICH
ENSG00000278834	ENSG00000182809	CRIP2	KICH,KIRP,PAAD,TGCT,UVM		KICH
ENSG00000278834	ENSG00000214063	TSPAN4	KICH,SARC,TGCT,THCA,THYM		KICH
ENSG00000278834	ENSG00000270885	RASL10B	KICH,LGG,MESO,PAAD,UCS		KICH

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000278834	RP11-458J1.1,hsa-mir-22,WDR33	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,HSF2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PPWD1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RSRC2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ZHX2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,C1orf35	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PHF2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,DDX42	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ARL6IP6	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,CERS5	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,KAT7	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,DAXX	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ATAT1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,NR2C1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,COIL	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,TRMT10B	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RBM6	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,USP21	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,TADA2A	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,YTHDC1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,CBX1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PRR14	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SFPQ	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,C2orf68	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RBM8A	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,NRF1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PM20D2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RPRD2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PCGF2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,KANSL1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,INAVA	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ZNF7	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,BRD2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,EHMT1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ILKAP	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,NAA16	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,FAM117B	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ABT1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SENP7	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PRCC	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,UNK	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,POLM	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RCE1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PARP2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,NCOA5	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,LRRC75B	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ZSWIM4	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,KAT2A	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,USPL1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SRSF3	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,HMGN1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,EHMT2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,WDR89	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,TSEN2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ERCC3	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ARHGAP19	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SRSF6	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RBM4B	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,CCAR1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,NUP43	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,EPC1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,EXOSC2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,FAM104B	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RAD52	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PDE9A	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RPS6KB1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ZCCHC8	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,DDX31	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SMARCC2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PCF11	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,DUSP12	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,WDR5B	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,VEZF1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,NAB1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PAXBP1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,HGS	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,LUC7L3	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PAGR1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ING5	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,CLK2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,IRF2BP2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SSRP1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SNRNP48	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PCID2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,LUC7L2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SENP6	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,KHDC4	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,CEP95	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,MRPL53	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,MBTD1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,EIF4ENIF1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,TIA1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,DPF2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RSBN1L	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,MSL1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RC3H1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,NOP58	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RBBP6	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,CTPS2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,TAF7	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,TSEN54	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,TIGD1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,FRA10AC1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,TRIM13	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ADO	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,CRTC2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,POLG2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,MLLT6	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,NXF1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,NVL	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,NUP214	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,MRPL38	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RBMX	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,H3-3B	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PMS1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,UTP6	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,FBXO46	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PHF12	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SET	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,MSL2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SSR2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RBM45	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,MDC1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RBM5	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,TTF1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SNRPA	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,CXXC1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,COPS7B	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RCOR3	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SOGA1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ANGEL2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SUGP1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SUMO2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RGL2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,TLK2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,USF1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,C14orf93	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,CDK5RAP3	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,CHTOP	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RBM14	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,HINFP	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,UBTF	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,UIMC1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,MKS1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PCIF1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SF3B1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,FNBP4	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,HMGB1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SRSF1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,DGCR8	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,POGZ	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,BRD8	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,TBP	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,FANCG	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SURF6	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RYK	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PSME3IP1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,CTDSPL2	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,BUD13	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,RBM22	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,WRNIP1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PRR3	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,CSTF3	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SCAF4	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,KDM5B	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,LYSMD1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ING4	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SOX4	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,YY1AP1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,CASC3	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,MED19	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,PRPF39	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,WBP1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,NOL11	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,NFRKB	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,ZBTB5	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,LMBR1L	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,NELFE	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,SMAD4	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,DEDD	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,FBXL12	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,HEATR6	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-22,KATNBL1	KICH,CHOL,LGG,KIRP,LIHC
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,DENND6B	TGCT,CHOL,UVM,PAAD,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,SEPTIN7	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,SMARCE1	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,VEZF1	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,ARID4B	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,SEPTIN8	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,C12orf76	TGCT,CHOL,GBM,PAAD,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,DPY19L4	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,MLH3	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,LLGL1	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,ABCA2	TGCT,CHOL,UVM,GBM,PAAD,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,TLCD5	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,CTPS2	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,PLXNA3	TGCT,CHOL,UVM,PAAD,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,PTPN13	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,FANCF	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,EPC1	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,PTTG1IP	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,PLXNB1	TGCT,CHOL,GBM,PAAD,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,PIGM	TGCT,CHOL,UVM,GBM,KIRP
ENSG00000278834	RP11-458J1.1,hsa-mir-378a,POFUT2	TGCT,CHOL,UVM,PAAD,KIRP

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000278834.1	ENST00000619697.1	72	947	729

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential