 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | POLR1D,FKBP8,ARHGEF1,GSDMB,VAMP1,ARL16,UXT,EPOR,SLIRP,TCEA2,NDUFS3,TUBGCP2,KRT10,ABHD17A,TMEM234,C12orf57,CIRBP,PET100,RNF166,MZF1,ATP5MG,WDR83OS,SHARPIN,DPM2,QPCTL,MAPK8IP3,TMUB1,PPP2R3B,N4BP2L2,BCS1L,DMTF1,HINT2,CTU1,ACD,RPS27A,DPP7,XAB2,LMBR1L,TIMM17B,TRAPPC12,CENPB,NDUFA11,ULK3,CENATAC,NPEPL1,SNRPA,WDR54,SAFB2,KCTD13,MSANTD2,TRAPPC2L,TUBGCP6,CCDC14,CHKA,CCNQ,FAAP20,CLK4,C6orf136,LAMTOR2,SURF2,ZBED5,PRKD2,EIF3G,NDUFA3,RECQL4,CDK2AP2,SVBP,GATD1,GKAP1,SPRN,MICOS13,TAZ,SPG7,NAA80,SIGIRR,FAM104B,UQCR11,PSMD13,USE1,ECHDC2,RCCD1,RAB4B,COX19,CLK2,UQCC2,TARBP2,AGPAT2,ILKAP,VKORC1,LYRM4,POLG2,DHX34,MST1,RING1,RBM15,CHKB,METTL17,BBIP1,CBY1,WDR83,OSGEP,USF1,CLK1,ITGB3BP,GABPB1,NASP,RPS6KB2,ANKRD39,DHPS,WASHC3,RPAIN,MPST,OFD1,BABAM1,CARS2,ACYP1,MRPS34,SLC25A29,FCHSD1,PIH1D1,CTU2,CFAP298,B3GALT6,PFDN6,RBM42,ATP5MK,C3orf62,YJU2,NOC4L,ALKBH2,RPL35,NDUFA2,BORCS6,CLPP,ORMDL1,MIIP,TMEM160,LPAR2,PARL,RPP38,C18orf21,FDX2,CYBA,DDX51,AGER,ESS2,PSMB3,SRSF2,CDK11A,MTLN,SYMPK,FBXW4,TSEN54,ZNF593,ATG4B,MRPL57,PAFAH1B3,LMNTD2,NXF1,DCUN1D2,FAM229A,PFDN5,CCS,MRPL41,GIGYF1,HMGN3,FAM193B,NDUFB1,PNKP,ABCA7,SLC25A28,NOL3,SEC31B,CZIB,RABL6,KLHL17,ARHGAP33,ELOF1,DNASE1,HEXD,SDHAF2,HDAC8,RPL23A,VCPKMT,ANAPC11,SCNN1D,CCDC24,RRP7A,CCDC12,EIF3K,PTRHD1,POLM,ZNF69,ERCC5,MCRIP1,TRIR,FAAP100,SCNM1,RTRAF,ZNHIT1,GLI4,DNAJC4,MRPL55,EMG1,NMRAL1,NDUFB8,SH2B1,COX6B1,STK11,PPP1R12C,C1orf159,NDUFS8,DDX56,PRR3,FAM98C,IP6K2,PPOX,NDUFB11,RPL23,C19orf53,INO80C,MRPL20,EIF2B4,MRPL28,C20orf96,HSCB,RASAL3,ARFGAP1,MIX23,CAPN10,PFDN2,RPL13A,GLMN,FAM111A,RPL37A,THOC1,NUBP2,TMEM175,PTGES2,GNPTG,NUTF2,ACBD6,TNK2,INTS11,FIS1,P2RY11,ZNF44,PSMC3,NPDC1,NAA38,LTO1,PIDD1,AP5Z1,CWC15,CCDC106,NAA10,FBXO44,NELFE,METTL23,EXD3,NFKBID,GSDMD,PCED1A,ABTB1,STX8,EVA1B,C11orf98,ELP5,TBCB,CHMP2A,SYCE1L,LMF1,MRPS15,BRF1,THOC6,ENOSF1,POLRMT,UBOX5,ANKRD49,PAXBP1,LEMD2,PQBP1,LENG1,FNBP4,DENND6B,PEX11G,PRMT7,ATF4,CCHCR1,INPP5E,PHF11,RSRP1,IFI27L2,IL11RA,SGF29,NEK8,SF3A2,MBD3,POLR2L,PTPN6,SERF2,RPS10,CRACR2B,CLEC2D,VPS28,FIZ1,TRPT1,TM7SF2,LTB4R,KIFC2,ODF3B,HEMK1,RABEP2,OGFR,PTOV1,PCSK4,CDC37,FRS3,NDUFAF5,C2orf68,FBXL8,RBM6,KRTCAP2,ZNF862,IDUA,TMEM134,SREK1IP1,POP5,ORAI3,ZDHHC24,MYL5,CUEDC2,METTL26,TNFRSF14,UCKL1,SCAND1,PSME3IP1,STK32C,WDR27,UBXN11,HSPBP1,EME2,PTCD1,PPCDC,DCAF15,CROCC,CERS5,USF2,NCAPH2,PNISR,RP9,SFPQ,MIER2,RALY,FHOD1,TRIOBP,ACAP3,LRRC27,JOSD2,CLDN5,SPAG7,NOSIP,ENKD1,FAM3A,ASCC2,ATP5IF1,ZNF10,PSME2,BLOC1S1,ATAT1,IFFO1,DUT,IFT27,PYM1,ATP5F1E,AP2S1,ZBTB8OS,TRMU,MYPOP,CTBP1,BICRA,POMT1,ATXN7L2,PSMA2,SEM1,CHTF18,ARF5,CDPF1,CEP250,TFEB,DPY19L2,UBE2J2,NAT14,KATNBL1,C1orf35,CCDC174,ACAP1,TIMM13,MTIF3,CDK5RAP1,C7orf26,MARCHF9,BUD23,NPRL2,ZCWPW1,KLHDC4,CCNL2,FBXO46,CLK3,ANKRD10,VPS9D1,GFER,UQCRB,GABBR1,MIEN1,MED25,DDTL,H2AJ,TP53I13,MC1R,VILL,COQ4,COPS9,CCNT2,OSBPL7,DHRS12,STX10,KAT2A,ARMC5,ACBD4,SNU13,LRRC23,RBM26,PLA2G6,TMEM86B,RNPS1,COMTD1,NR2F6,ENTR1,RPL36AL,RHPN1,ENDOV,COPE,FAM207A,PPIE,CLDN15,MRPL11,FAM50A,MAP2K2,ITPA,BAD,POLI,PRPF39,ALKBH7,TMEM258,ERMARD,GEMIN7,GEMIN6,MIB2,EGFL7,MZT2B,PHF1,HAUS7,HDAC10,HEXIM2,SCRN2,HSF4,ARGLU1,ANKS3,NOXA1,YJEFN3,UCK1,SMDT1,CCNL1,RGL3,PIGQ,ANKRD54,SGSM2,RASSF7,TAF10,KRI1,RNF25,COX4I1,MICALL2,HSPBAP1,CRYGS,YAE1,SAC3D1,DYRK4,CENPS,RPS6,MZT2A,PSMG4,PBX4,TIA1,ZNF83,RETREG3,SFXN4,ARFRP1,NSUN6,CIAO2B,MCRIP2,ABCD4,BRAT1,AAMDC,PELP1,PSMG3,MRPL27,MYL6B,UQCR10,SAYSD1,C19orf25,IPO4,MYG1,DTX3,KPTN,RNF215,ERCC1,PSMB1,ZMYND19,TLE5,NAT9,CPNE1,ABHD14A,LUC7L,TPGS1,PNN,COA5,MAP2K7,PPAN,C14orf93,LRSAM1,DPH7,RNF126,NSMCE4A,TRA2A,ATP5F1D,RPS13,MRPL43,CEP131,PNPLA7,HINFP,XPA,NR2C1,CRTC2,APBB3,CNTROB,CYTH2,WDR74,ANAPC16,NOP53,IRF2BP1,RBM33,FKBP2,NADSYN1,IMMP1L,SRRT,AGAP6,RPS17,NDUFB10,WRAP73,LRMDA,GEMIN8,UBA52,RBM39,ODF2L,RPS29,DNAJC30,SLC25A27,MRPS26,IRF3,IMP3,SERGEF,NDUFA13,CHCHD5,C7orf50,NRF1,RRNAD1,GADD45GIP1,SNRPD2,SNF8,HRAS,PIGL,RP11-523H20.5,CSAD,RPS26,KIAA0895L,DDX39A,TBC1D10C,ATAD3B,ZNHIT2,SAMD10,MUTYH,BANF1,BCL7C,DCAF8,PHYKPL,TMEM259,FRA10AC1,CACTIN,RPL27,LIN37,OGA,PAN3,PHKG2,NARF,PMF1,SARS2,ARHGAP4,ASB6,POLR2J,LRRC75B,SS18L2,SWSAP1,TBC1D17,RFXANK,FAM89B,POLR2I,CENPT,ZGLP1,UROS,SHC2,CFAP410,MTG1,ANAPC7,GTPBP3,CXCR4,LSM4,C1orf50,RBM4B,SNRPB,APOM,MRPS31,ANAPC2,BEND5,TAF1C,LCAT,COX17,ATP5MJ,SAMD1,RABAC1,DCXR,RNASEH2B,UBL5,RPS8,RPS11,CXXC1,PLEKHJ1,SS18L1,ELMOD3,GPATCH3,NDUFB7,NSUN5,HAUS5,CHFR,MTRF1,REC8,UBXN1,CLN6,THYN1,FBXL12,PRAF2,PGGHG,PEX16,TELO2,CDAN1,FBXL6,WSB1,TEDC1,AUP1,FAM228B,WASHC1,CHCHD10,TIGD1,KLC1,RBM10,GPS2,TRIM52,NDUFC1,RPL36A,COA8,THAP3,NOL12,PCP2,CLASRP,CWC25,STAC3,TTC32,MOB2,ZMAT1,GOLGA8B,COMMD6,STMN3,SPATA33,RPS24,SMG9,ZNF18,TMA7,GOLGA8A,EMC9,PAM16,YBEY,SETD4,TPRKB,PSMC5,AARSD1,DUSP28,RBM5,BOLA1,TSR3,RPS19BP1,SMIM4,NKTR,YPEL3,SAP30BP,RNASEH2C,PLEKHO1,TTLL3,NSMCE1,SLC25A45,ZNF84,PIN1,ATP5MC2,PARP6,C19orf18,DGCR6L,SPSB2,REX1BD,LRP5L,TFPT,SH3GLB2,HSD11B1L,FASTK,CYHR1,SIRT6,ZNRD2,DXO,USPL1,ANKRD13D,USP20,MRPL54,TRAPPC2,FAM174C,SNRPB2,SIRT7 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CNOT1,ADAM17,PARP1,IDH3A,TRAP1,DLST,PSMD2,PNPO,ARID1A,LAPTM4A,VPS4B,UHRF1BP1L,MYH9,SNX12,RNF123,UBE2K,FCF1,PTPRK,RNF4,ALG1,NT5C2,GPN3,NAF1,BECN1,SERINC5,HIPK1,KPNA6,RNF40,FAM104A,SNX6,UBR1,DAG1,NRBF2,GNL3L,PSEN1,NOP9,TAOK3,RAB3GAP1,LARP1,CEP104,GBA,TSR1,ARF4,KAT5,KIAA0100,PLEKHB2,EIF4G1,TUBA1C,IARS1,BPNT1,GORASP2,VPS26A,SLAIN2,ATP6V0C,PDXDC1,CANT1,PCBP1,OS9,SRP72,CAP1,CLTC,IPO11,GMPS,SDHC,ATP2A2,MRPL19,VGLL4,DHX8,NECAP1,LZIC,CTNNB1,CCDC47,NBR1,THTPA,PDPK1,HSPA8,M6PR,C5orf24,ACBD5,WWP1,APAF1,ASCC1,ILK,TMEM127,TP53BP1,TPP1,EPS8,ERLIN2,SURF4,ACO2,NOMO2,USP32,PHF20,LRP10,KIDINS220,IQGAP1,G3BP1,GIGYF2,SEPTIN11,TMCO3,RNF31,DAZAP2,SART3,CIPC,SDCBP,FBXO11,GSTCD,ASPH,GANAB,SEC23A,PRMT5,STK24,ZFPL1,JKAMP,MKLN1,C9orf64,DDX3X,CLCC1,ASXL2,MFSD14A,PSME3,RNF169,RAB35,MAPK1,IKBKG,TARS1,SMAD1,POLR2B,COPB2,CNIH1,WIPF2,HSD17B4,SEC14L1,PRKAR2A,RAB11FIP1,AGFG1,RAB5C,LMBR1,ZFAND3,CHMP5,USP9X,PDLIM5,NDST1,DYNC1LI2,VPS35,KBTBD4,RAB18,CDC40,YAP1,MFSD1,RASA1,CHTF8,APP,BPNT2,MED13,MAIP1,SF3A1,TMED1,ADNP2,TMLHE,SLC4A2,DDB1,ABHD5,DDX60,DCAF7,RPN2,NID2,PPARA,VAMP7,PIGS,RBM7,IFNAR1,GTF2A1,MRPL49,TFIP11,SNX2,TNPO1,FASTKD2,SEC23B,PPP2CB,KIF2A,RNF41,MYO18A,GOSR2,EIF3L,PLS1,HBP1,EIF4G2,SPTLC1,THRAP3,LARS2,SEC22C,CSNK1A1,NAA50,TMOD3,PLIN3,ACTN4,CTNNA1,PIGO,UGGT1,RPE,VRK2,CARM1,TAF2,ANO6,TMEM184C,CAST,BCOR,ITFG1,SLC30A7,RUSF1,AIMP2,CANX,FNDC3B,ARCN1,NDE1,UBFD1,TMBIM6,HAUS2,ADAT1,ATF1,AFAP1,GNG10,ZHX1,MCFD2,TRAF7,NDUFS1,EMC1,TAF5L,ACTR6 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000277959 | ENST00000614406 | exon_skip_1234 | chr1:11658532-11658628 | -10.86 | -0.1508 | FBXO44 | ENST00000251547,ENST00000376770 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000277959 | ENST00000614406 | exon_skip_41813 | chr10:68337857-68337996 | -10.11 | -0.1509 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_370518 | chr22:50247691-50247776 | -16.45 | -0.2697 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_374497 | chr3:49999439-49999513 | -9.46 | -0.1433 | RBM6 | ENST00000266022 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_374551 | chr3:50100531-50100605 | -10.78 | -0.1540 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_382458 | chr3:38131595-38131638 | -12.94 | -0.4621 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_9446 | chr1:147270931-147271005 | -7.47 | -0.1494 | CHD1L | ENST00000369258 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_53559 | chr10:101793912-101793998 | -9.38 | -0.1379 | OGA | ENST00000361464 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_74009 | chr11:64773429-64773505 | -10.26 | -0.1487 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_87733 | chr12:120571190-120571291 | -14.19 | -0.1819 | RNF10 | ENST00000325954 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_97655 | chr12:120579773-120579923 | -12.49 | -0.1015 | POP5 | ENST00000357500 | In-frame | | ENSG00000277959 | ENST00000614406 | exon_skip_290158 | chr17:42953723-42953778 | -6.85 | -0.1957 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_292904 | chr17:69251746-69251866 | -12.32 | -0.1257 | ABCA5 | ENST00000392676,ENST00000588877 | In-frame | | ENSG00000277959 | ENST00000614406 | exon_skip_319223 | chr19:43526200-43526349 | -14.85 | -0.1092 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_324294 | chr2:27774423-27774530 | -13.20 | -0.1361 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_335558 | chr2:240596680-240596942 | -24.46 | -0.1117 | CAPN10 | ENST00000391984 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_353131 | chr20:58669290-58669453 | -22.49 | -0.1540 | STX16 | ENST00000371141 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_371367 | chr3:9697710-9697866 | -12.92 | -0.1017 | MTMR14 | ENST00000296003 | In-frame | | ENSG00000277959 | ENST00000614406 | exon_skip_377198 | chr3:123130479-123130616 | -16.10 | -0.1278 | PDIA5 | ENST00000316218 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_436035 | chr5:79656957-79657001 | -6.52 | -0.1672 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_466113 | chr7:48099669-48099787 | -9.58 | -0.1597 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_466137 | chr7:48103296-48103411 | -12.41 | -0.1293 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_476549 | chr7:76013741-76013887 | -12.14 | -0.1179 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_481699 | chr8:19824802-19824972 | -9.36 | -0.1052 | INTS10 | ENST00000397977 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_374581 | chr3:50110378-50110463 | -9.86 | -0.1315 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_509943 | chrX:47175018-47175092 | -8.39 | -0.1353 | RBM10 | ENST00000377604 | Frame-shift | | ENSG00000277959 | ENST00000614406 | exon_skip_313503 | chr19:5611119-5611630 | -29.37 | -0.1068 | SAFB2 | ENST00000252542 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000277959 | ENSG00000004777 | ARHGAP33 | ACC,KIRC,KIRP,PAAD,THCA,THYM,UCS | KIRC | | | ENSG00000277959 | ENSG00000013441 | CLK1 | ACC,BLCA,CHOL,KIRC,KIRP,PAAD,TGCT,THCA,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000117616 | RSRP1 | ACC,BRCA,CHOL,KIRC,KIRP,PAAD,STAD,TGCT,THCA,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000139631 | CSAD | ACC,BLCA,BRCA,KIRC,KIRP,PAAD,STAD,TGCT,THCA,UVM | KIRC | | | ENSG00000277959 | ENSG00000139636 | LMBR1L | ACC,BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,SARC,THCA,THYM,UCEC,UVM | KIRC | | | ENSG00000277959 | ENSG00000164877 | MICALL2 | ACC,BRCA,KIRC,KIRP,UCS | KIRC | | | ENSG00000277959 | ENSG00000175265 | GOLGA8A | ACC,BLCA,BRCA,CHOL,DLBC,KIRC,KIRP,PAAD,STAD,TGCT,THCA,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000184465 | WDR27 | ACC,BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,TGCT,THCA,UCEC,UCS | KIRC | | | ENSG00000277959 | ENSG00000197774 | EME2 | ACC,BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,THCA,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000204149 | AGAP6 | ACC,BLCA,BRCA,CESC,CHOL,KIRC,KIRP,LAML,PAAD,STAD,TGCT,THCA,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000204305 | AGER | ACC,BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,STAD,TGCT,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000213398 | LCAT | ACC,BRCA,CESC,ESCA,KIRC,KIRP,PAAD,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000061938 | TNK2 | BLCA,BRCA,CHOL,KIRC,TGCT | KIRC | | | ENSG00000277959 | ENSG00000100288 | CHKB | BLCA,BRCA,CHOL,DLBC,KIRC,KIRP,PAAD,SARC,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000100429 | HDAC10 | BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,SARC,TGCT,THCA,THYM,UCEC,UCS | KIRC | | | ENSG00000277959 | ENSG00000104859 | CLASRP | BLCA,BRCA,CESC,CHOL,DLBC,KIRC,KIRP,PAAD,SARC,TGCT,THCA,THYM,UCEC,UCS | KIRC | | | ENSG00000277959 | ENSG00000108773 | KAT2A | BLCA,CHOL,KIRC,KIRP,PAAD,TGCT,THCA,UVM | KIRC | | | ENSG00000277959 | ENSG00000109046 | WSB1 | BLCA,BRCA,KIRC,KIRP,UVM | KIRC | | | ENSG00000277959 | ENSG00000127415 | IDUA | BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,SARC,THCA | KIRC | | | ENSG00000277959 | ENSG00000132522 | GPS2 | BLCA,BRCA,CHOL,KIRC,KIRP,LAML,PAAD,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000135722 | FBXL8 | BLCA,BRCA,KIRC,KIRP,THCA,THYM | KIRC | | | ENSG00000277959 | ENSG00000138834 | MAPK8IP3 | BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,THCA,UCEC,UVM | KIRC | | | ENSG00000277959 | ENSG00000167702 | KIFC2 | BLCA,KIRC,KIRP,THCA,UCS | KIRC | | | ENSG00000277959 | ENSG00000172890 | NADSYN1 | BLCA,CHOL,KIRC,KIRP,PAAD,THCA,THYM | KIRC | | | ENSG00000277959 | ENSG00000175309 | PHYKPL | BLCA,BRCA,KIRC,PAAD,THCA,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000185522 | LMNTD2 | BLCA,KIRC,KIRP,THCA,UCS | KIRC | | | ENSG00000277959 | ENSG00000186166 | CENATAC | BLCA,BRCA,CHOL,KIRC,KIRP,LAML,PAAD,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000196123 | KIAA0895L | BLCA,BRCA,KIRC,KIRP,PAAD,THCA,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000197948 | FCHSD1 | BLCA,CHOL,KIRC,KIRP,PAAD,UCS | KIRC | | | ENSG00000277959 | ENSG00000214021 | TTLL3 | BLCA,BRCA,KIRC,KIRP,PAAD,STAD,THCA,UCEC,UCS | KIRC | | | ENSG00000277959 | ENSG00000215252 | GOLGA8B | BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000215375 | MYL5 | BLCA,BRCA,CHOL,KIRC,KIRP,SARC,THCA,THYM,UCEC | KIRC | | | ENSG00000277959 | ENSG00000217930 | PAM16 | BLCA,CHOL,KIRC,KIRP,PAAD,THCA,THYM,UCS | KIRC | | | ENSG00000277959 | ENSG00000221978 | CCNL2 | BLCA,BRCA,CHOL,KIRC,KIRP,LAML,PAAD,STAD,TGCT,THCA,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000250067 | YJEFN3 | BLCA,CHOL,KIRC,KIRP,LAML,TGCT,UVM | KIRC | | | ENSG00000277959 | ENSG00000256525 | POLG2 | BLCA,CHOL,KIRC,KIRP,PAAD,STAD,THCA,UVM | KIRC | | | ENSG00000277959 | ENSG00000273899 | NOL12 | BLCA,BRCA,CHOL,DLBC,KIRC,KIRP,LAML,PAAD,STAD,TGCT,THCA,THYM,UCEC | KIRC | | | ENSG00000277959 | ENSG00000113108 | APBB3 | BRCA,ESCA,KIRC,KIRP,PAAD,STAD,THCA,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000129946 | SHC2 | BRCA,KIRC,KIRP,PAAD,THCA | KIRC | | | ENSG00000277959 | ENSG00000130653 | PNPLA7 | BRCA,KIRC,KIRP,LAML,PAAD,THCA | KIRC | | | ENSG00000277959 | ENSG00000157873 | TNFRSF14 | BRCA,CHOL,KIRC,KIRP,PAAD,THCA,THYM | KIRC | | | ENSG00000277959 | ENSG00000158062 | UBXN11 | BRCA,CHOL,KIRC,KIRP,PAAD,SARC,TGCT,THCA,THYM,UCS | KIRC | | | ENSG00000277959 | ENSG00000160072 | ATAD3B | BRCA,CESC,CHOL,KIRC,KIRP,PAAD,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000162572 | SCNN1D | BRCA,CHOL,KIRC,KIRP,LAML,PAAD,TGCT,THYM,UCS | KIRC | | | ENSG00000277959 | ENSG00000167604 | NFKBID | BRCA,CHOL,KIRC,KIRP,PAAD,TGCT,THYM | KIRC | | | ENSG00000277959 | ENSG00000175455 | CCDC14 | BRCA,KIRC,KIRP,TGCT,UVM | KIRC | | | ENSG00000277959 | ENSG00000177595 | PIDD1 | BRCA,CHOL,KIRC,KIRP,PAAD,THCA,THYM,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000204681 | GABBR1 | BRCA,KIRC,KIRP,PAAD,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000213903 | LTB4R | BRCA,CHOL,KIRC,KIRP,PAAD,THCA,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000060491 | OGFR | CESC,CHOL,ESCA,KIRC,KIRP,PAAD,THCA,THYM,UCS | KIRC | | | ENSG00000277959 | ENSG00000215440 | NPEPL1 | CESC,CHOL,DLBC,KIRC,KIRP,PAAD,THCA,THYM,UCEC,UCS | KIRC | | | ENSG00000277959 | ENSG00000010295 | IFFO1 | CHOL,KIRC,KIRP,PAAD,TGCT,UVM | KIRC | | | ENSG00000277959 | ENSG00000069493 | CLEC2D | CHOL,KIRC,KIRP,PAAD,TGCT | KIRC | | | ENSG00000277959 | ENSG00000072609 | CHFR | CHOL,KIRC,KIRP,PAAD,THYM,UVM | KIRC | | | ENSG00000277959 | ENSG00000073605 | GSDMB | CHOL,KIRC,KIRP,TGCT,THCA,THYM | KIRC | | | ENSG00000277959 | ENSG00000076928 | ARHGEF1 | CHOL,KIRC,KIRP,PAAD,TGCT,THYM | KIRC | | | ENSG00000277959 | ENSG00000089820 | ARHGAP4 | CHOL,KIRC,PAAD,TGCT,THYM,UCS | KIRC | | | ENSG00000277959 | ENSG00000102125 | TAZ | CHOL,KIRC,KIRP,PAAD,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000105122 | RASAL3 | CHOL,KIRC,PAAD,TGCT,THYM | KIRC | | | ENSG00000277959 | ENSG00000107281 | NPDC1 | CHOL,KIRC,PAAD,SARC,THCA,UCS | KIRC | | | ENSG00000277959 | ENSG00000113240 | CLK4 | CHOL,KIRC,KIRP,PAAD,STAD,THCA,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000127586 | CHTF18 | CHOL,KIRC,KIRP,THCA,THYM,UCS | KIRC | | | ENSG00000277959 | ENSG00000135723 | FHOD1 | CHOL,KIRC,PAAD,THCA,UCS | KIRC | | | ENSG00000277959 | ENSG00000142102 | PGGHG | CHOL,KIRC,KIRP,SARC,TGCT,UCEC,UCS | KIRC | | | ENSG00000277959 | ENSG00000158717 | RNF166 | CHOL,KIRC,KIRP,PAAD,THYM,UVM | KIRC | | | ENSG00000277959 | ENSG00000174943 | KCTD13 | CHOL,KIRC,KIRP,LAML,PAAD,TGCT,THCA | KIRC | | | ENSG00000277959 | ENSG00000187961 | KLHL17 | CHOL,KIRC,KIRP,PAAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000267796 | LIN37 | CHOL,KIRC,KIRP,PAAD,THCA,THYM | KIRC | | | ENSG00000277959 | ENSG00000172889 | EGFL7 | KIRC,PAAD,SARC,THCA,UCS | KIRC | | | ENSG00000277959 | ENSG00000177989 | ODF3B | KIRC,KIRP,PAAD,TGCT,THCA | KIRC | | | ENSG00000277959 | ENSG00000178026 | LRRC75B | KIRC,KIRP,TGCT,THCA,UCEC,UCS,UVM | KIRC | | | ENSG00000277959 | ENSG00000182325 | FBXL6 | KIRC,KIRP,TGCT,THCA,THYM,UCS | KIRC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000277959 | ENST00000614406 | DAG1 | ENSG00000173402 | ENST00000435508 | -0.2131 | 57 | - | KIRC |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000277959.1 | ENST00000614406.1 | 147 | 1194 | 751 |
|
