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lncRNA: ENSG00000277534

Summary for RP11-9E17.1

Gene summary

Gene information	Ensembl ID	ENSG00000277534
	Gene symbol	RP11-9E17.1
	Gene name
	HGNC
	Entrez ID
	Gene type	sense_intronic
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-9E17.1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000277534	1.448352e+02	1.784691e+00	2.733861e-01	6.528097e+00	6.660000e-11	8.970000e-10	UP	CHOL
ENSG00000277534	1.832722e+02	-1.669250e+00	1.221675e-01	-1.366362e+01	1.670000e-42	2.980000e-41	DOWN	KIRC
ENSG00000277534	3.438110e+02	2.570256e+00	5.286889e-01	4.861566e+00	1.160000e-06	2.870000e-05	UP	CESC
ENSG00000277534	6.217290e+02	2.064464e+00	1.872999e-01	1.102224e+01	2.990000e-28	8.760000e-27	UP	UCEC
ENSG00000277534	3.900971e+02	2.342876e+00	1.733406e-01	1.351603e+01	1.260000e-41	2.220000e-40	UP	LUSC
ENSG00000277534	1.716750e+02	1.198225e+00	1.528540e-01	7.839018e+00	4.540000e-15	3.220000e-14	UP	LUAD
ENSG00000277534	2.569750e+02	1.280785e+00	1.924517e-01	6.655096e+00	2.830000e-11	4.420000e-10	UP	STAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000277534	5.946616e-01	1.650731e-05	CHOL	9.125258e-05
ENSG00000277534	-3.588915e-01	6.398779e-20	KIRC	4.964570e-19
ENSG00000277534	3.026762e-01	6.674361e-14	UCEC	4.785391e-13

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lncRNA-Protein interaction for RP11-9E17.1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000067369	TP53BP1	85.36	96.3282	Q12888	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000036257	CUL3	82.32	91.4543	Q13618	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000124177	CHD6	75.53	96.9567	Q8TD26	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000171316	CHD7	72.85	92.9255	Q9P2D1	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000119778	ATAD2B	71.49	91.2371	Q9ULI0	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000185658	BRWD1	70.75	97.1974	Q9NSI6	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000085224	ATRX	68.76	96.9672	P46100	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000118058	KMT2A	66.73	97.6693	Q03164	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000101126	ADNP	66.27	93.6814	Q9H2P0	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000147133	TAF1	65.86	95.4292	P21675	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000036549	ZZZ3	64.82	94.1709	Q8IYH5	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000171634	BPTF	63.42	97.5795	Q12830	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000134852	CLOCK	58.07	94.4124	O15516	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000163635	ATXN7	43.25	95.1753	O15265	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000117625	RCOR3	19.57	93.8732	Q9P2K3	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000129484	PARP2	11.44	92.9752	Q9UGN5	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000123636	BAZ2B	101.83	96.8338	Q9UIF8	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000178691	SUZ12	88.89	91.7993	Q15022	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000181555	SETD2	84.32	95.9973	Q9BYW2	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000129292	PHF20L1	80.61	93.5473	A8MW92	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000164190	NIPBL	78.69	96.9791	Q6KC79	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000165288	BRWD3	71.72	96.6952	Q6RI45	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000116539	ASH1L	71.38	92.9281	Q9NR48	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000114933	INO80D	71.14	93.4187	Q53TQ3	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000177200	CHD9	67.94	93.2202	Q3L8U1	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000109118	PHF12	62.23	92.7098	Q96QT6	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000204406	MBD5	60.08	94.1148	Q9P267	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000084093	REST	59.46	95.4049	Q13127	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000189079	ARID2	58.2	94.0353	Q68CP9	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000173889	PHC3	53.52	92.0116	Q8NDX5	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000112787	FBRSL1	53.45	93.8463	Q9HCM7	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000120071	KANSL1	44.39	95.1306	Q7Z3B3	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000135999	EPC2	42.53	94.4312	Q52LR7	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000134046	MBD2	22.87	91.769	Q9UBB5	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000015171	ZMYND11	14.19	93.7407	Q15326	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000151332	MBIP	13.79	92.177	Q9NS73	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000205531	NAP1L4	13.55	92.1254	Q99733	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000131263	RLIM	11.79	95.1494	Q9NVW2	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000163605	PPP4R2	7.17	91.8249	Q9NY27	Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000073584	SMARCE1	3.31	92.2962	Q969G3	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000123636	BAZ2B	101.83	96.9429	Q9UIF8	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000115816	CEBPZ	84.97	92.7864	Q03701	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000102908	NFAT5	79.47	93.6738	O94916	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000085276	MECOM	75.86	95.0687	Q03112	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000116539	ASH1L	71.38	92.9997	Q9NR48	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000135164	DMTF1	70.91	91.8028	Q9Y222	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000181827	RFX7	69.64	95.7966	Q2KHR2	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000100105	PATZ1	67.78	92.3806	Q9HBE1	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000100625	SIX4	67.71	94.1473	Q9UIU6	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000118058	KMT2A	66.73	97.733	Q03164	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000101126	ADNP	66.27	93.8295	Q9H2P0	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000140836	ZFHX3	66.0	97.2454	Q15911	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000036549	ZZZ3	64.82	94.3281	Q8IYH5	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000171634	BPTF	63.42	97.6438	Q12830	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000167232	ZNF91	60.35	95.779	Q05481	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000084093	REST	59.46	95.7824	Q13127	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000189079	ARID2	58.2	94.1583	Q68CP9	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000134852	CLOCK	58.07	94.6073	O15516	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000196670	ZFP62	53.96	95.5373	Q8NB50	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000114439	BBX	53.21	96.0526	Q8WY36	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000172379	ARNT2	50.92	92.5561	Q9HBZ2	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000147789	ZNF7	50.16	93.7224	P17097	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000198040	ZNF84	45.63	95.0123	P51523	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000170448	NFXL1	42.73	95.0344	Q6ZNB6	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000186272	ZNF17	39.57	94.1366	P17021	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000105708	ZNF14	30.6	94.6029	P17017	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000197857	ZNF44	29.06	92.7846	P15621	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000141568	FOXK2	25.31	91.399	Q01167	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000134046	MBD2	22.87	91.9217	Q9UBB5	TF,Epi	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000169981	ZNF35	18.46	94.2847	P13682	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000142065	ZFP14	16.74	92.8845	Q9HCL3	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000180787	ZFP3	15.99	93.3265	Q96NJ6	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000171970	ZNF57	15.57	93.9687	Q68EA5	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000109381	ELF2	13.63	91.3951	Q15723	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000185129	PURA	13.51	91.8078	Q00577	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000256223	ZNF10	12.37	92.0193	P21506	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000172466	ZNF24	10.1	91.8335	P17028	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000175691	ZNF77	10.03	93.5807	Q15935	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000186130	ZBTB6	8.56	92.5975	Q15916	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000187815	ZFP69	6.39	93.463	Q49AA0	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000275111	ZNF2	4.52	93.8321	Q9BSG1	TF	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000178177	LCORL	2.91	93.6102	Q8N3X6	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000178105	DDX10	89.73	94.3591	Q13206	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000198231	DDX42	76.11	93.0782	Q86XP3	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000064607	SUGP2	75.25	91.631	Q8IX01	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000213079	SCAF8	73.08	96.4852	Q9UPN6	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000198000	NOL8	67.48	96.0524	Q76FK4	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000163728	TTC14	63.64	93.8435	Q96N46	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000135870	RC3H1	48.1	94.6415	Q5TC82	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000102081	FMR1	29.45	93.332	Q06787	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000114416	FXR1	26.97	92.8312	P51114	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000173933	RBM4	23.14	90.8147	Q9BWF3	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000121390	PSPC1	21.38	93.0905	Q8WXF1	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000148296	SURF6	20.43	91.7854	O75683	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000124193	SRSF6	17.94	91.9333	Q13247	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000111605	CPSF6	12.54	91.2328	Q16630	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000115875	SRSF7	11.89	92.1932	Q16629	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000104177	MYEF2	7.36	91.0642	Q9P2K5	RBP	NA
ENSG00000277534	ENST00000620414	RP11-9E17.1	ENSG00000161547	SRSF2	3.96	90.9713	Q01130	RBP	NA

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lncRNA-DNA interaction for RP11-9E17.1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

PEX2,CMTM4,TOMM20,ERI2,LARS1,PRPSAP2,TXNL1,TBC1D24,CSNK1G3,ATL2,GLYR1,PLLP,LIG3,PAK1,DYNC2LI1,ILDR1,CNOT9,SUGP2,N4BP2L2,DMTF1,ZDHHC23,NSD3,HLTF,SENP1,ZNF24,FAM120AOS,TOB2,PIGW,EPCAM,BCL7A,ATP1B1,NBN,ZFP14,CENATAC,PUM3,TP53INP1,ST7L,MMADHC,MREG,CCDC14,STRBP,AMN1,HUS1,PNO1,SETD2,TTC14,ATP8B1,KNTC1,MEX3C,GATD1,SUDS3,SMIM15,SUSD4,PPIP5K2,STX18,CAPN7,ATR,FAM83H,SIAH1,SMAD2,PPIP5K1,CCNB1IP1,ARIH1,MARS2,CARNMT1,NCBP1,MYEF2,ASH1L,CLOCK,NFIA,PTAR1,TUT4,IFT81,FAN1,UBE3A,RPAP3,MBD2,ESRP1,TRIM37,ZBTB6,ATXN7,ITGB3BP,GTF3C2,ACYP1,RBBP4,RFX7,TBCCD1,PURA,MBD5,CBX1,RSRC2,TTC21B,CAMKMT,NPAT,ZNHIT6,NAPB,RRM2B,NAA25,JPT2,ERMP1,ZADH2,RHPN2,NEMP1,ZFP62,PRKX,SOCS4,NARS1,ORMDL1,CHD9,BRAF,COQ7,FAM53C,PIGN,C12orf73,BRIX1,NKAPD1,ORC2,GUF1,SLC35F5,SBNO1,SRSF2,PHC3,BTF3L4,TFCP2,TYW3,MTMR2,INTS2,SUPT20H,RSRC1,MARVELD2,UQCC1,CTDSPL,NR2C2,PPP4R2,TIMM10B,ZNF14,RMI1,SCRN3,PLS1,SNX4,XPO1,ZMPSTE24,METTL4,ATG2B,CLCN3,MBTD1,ECD,SEPSECS,FBXO21,MAN1A2,HDAC8,GAS8,DDX42,CCNT1,VCPKMT,DENR,TTC3,CCDC24,SVIP,EIF2AK2,PGGT1B,ECPAS,RALBP1,ZFP3,DNAJA3,MECOM,RCHY1,SELENOI,CUL3,CD2AP,RWDD4,KBTBD6,SDHD,MAPK1IP1L,ATM,PDCD10,FLVCR1,FANCL,LAPTM4B,DPY19L3,LCORL,OVOL2,CSNK1G1,CEP57,PAWR,MIB1,FGD4,THOC3,FAM168B,METAP1,SPICE1,KLHL15,RELCH,PRPF40A,GSK3B,PIBF1,CLASP1,FASTKD1,LAMTOR3,INO80D,ICE2,ENOPH1,C20orf96,DDX55,KPNA1,MRPS28,MNS1,CAPN10,METTL21A,PARP11,FAM136A,GCFC2,THOC1,MAML3,TRNT1,PHF12,LANCL1,FKBP4,ACTR8,ZZZ3,UGGT2,CLDN1,NDC1,TAMM41,UNG,IFT74,AP5M1,RC3H1,NUDT3,OPA1,XPO4,ZNF44,ARL6IP1,TRIM13,RAB14,SMG1,VAPA,PSMD14,HSPA9,MFSD9,DNAJB14,PPM1B,SLC39A9,MSH3,FZD5,IGSF3,ARNT2,CEP83,MYO5C,GGNBP2,DDX6,TSN,C17orf75,LRIG2,PARP2,RBM47,PATZ1,SESTD1,LCMT2,NEMF,SLC5A3,REV3L,OSBP,IWS1,PEX26,REEP5,ZC3H8,ENOSF1,PAXBP1,DNAJC19,APPL2,CCDC125,TADA2A,LRRC56,BOD1L1,PTRH2,EYA3,CETN3,UNC50,GOLGB1,PWWP2A,BAG5,MTIF2,MYNN,SUMO2,C6orf132,VPS4B,RPE,MRPS9,ZNF720,SLC39A10,MIER3,PRKD1,UPF3B,LINS1,SNX5,PAFAH1B2,IBA57,PDHX,BCL2L11,C18orf32,NDUFAF5,GPBP1,MRE11,NDUFAF7,MFF,GK5,TRMT13,GDAP2,ZFAND6,TP53BP1,FAM171A1,ZFHX3,ARHGAP12,PIGF,ATP6V0A2,LRBA,VPS54,SMAD4,ACP1,FAM222B,CBX5,KIF3A,RYK,EPM2AIP1,NAA35,SCAMP1,NAP1L4,GTF3C4,HECTD4,GTPBP8,PLXNB1,RSAD1,PPP1R26,SIX4,PPM1H,PSMD12,NCBP2,ATAD2B,ZNF10,SRSF7,SINHCAF,CTBP2,MACIR,FAM126B,VAV2,C11orf1,NMNAT3,PREPL,BCL2,ESCO1,AFG3L2,RALGAPA1,TMX3,XRCC5,ANGEL2,GRSF1,ATPSCKMT,POC5,MYSM1,FAM214A,ARID2,STAM2,NEK4,SMARCE1,RBBP8,WDR12,CCDC6,SLC11A2,STARD7,GABPA,SLX4IP,WDR3,SUGT1,GTF3C3,MIS18A,AFTPH,TTC30B,LARGE2,TTC19,MYCBP,PRR14L,RPS6KB1,TOB1,UBXN7,MTMR12,KANSL3,DHX57,MRPS30,FBXO22,DENND4A,INIP,RLIM,CCNT2,RAB40B,PTCD3,ORC3,RAB1A,UBE2W,ZNF91,CHD6,AGO2,BRWD1,CSTF3,BMPR1A,RBM26,MRPL35,SPATA6,CCNH,CEBPZOS,RO60,TBCK,DPY30,MLH3,SP4,MRPL50,SETD6,MBIP,KANSL1L,ARL5A,UBR5,KIF21A,LNPEP,ETNK1,HDHD2,KIAA0753,WDFY3,ZFAND1,TRIM45,KCTD1,TMEM41B,E2F6,HSPD1,LCOR,TMEM69,TMEM128,TMC4,CNOT11,FBXL20,MRPS22,CENPC,OTUD6B,TDG,NEPRO,WBP11,TLK1,GMCL1,ASB7,SUMO1,C2orf49,PLEKHA3,TGS1,CELF1,NUP88,TMEM161B,PSPC1,CCDC121,EPG5,KRR1,RBM45,NFXL1,HLCS,SPATA5,PMS1,APEX1,JUP,DCUN1D1,METTL6,WDR36,DSG2,TIA1,BAG4,MAIP1,RMDN1,KANSL1,TMTC3,BTG3,SLBP,VSIG10,TMEM68,EIF5B,GIN1,FASTKD2,HELZ,LIPT1,CWF19L2,ELF2,CRAMP1,SPOPL,NUDCD2,F11R,PTBP3,PNN,COA5,NIF3L1,CCAR1,SACM1L,CACUL1,UBE2V1,GSPT1,ARHGAP5,STXBP6,UXS1,SNX13,TMEM131,AREL1,MAPKAPK5,FBXO36,POLR3F,KMT2A,REV1,FZD6,XPA,NR2C1,RAB5B,SOS1,JMY,RAD17,NOL8,ADAL,ZDHHC21,IMMP1L,LYPLA1,TIMM21,CEBPZ,COA7,CHCHD4,GOLM1,DSTYK,DNAAF2,USP34,MPHOSPH10,CPEB2,RBM39,TATDN3,TNPO1,ZCCHC8,KDF1,ZNF2,KAT7,FAM210A,ESF1,ICA1,KCTD6,ERH,PLA2G12A,ARV1,PPP1CC,ATRX,ZNF77,MAP3K2,RPRD1A,YARS2,NOL10,ATP5F1A,BRI3BP,C2CD5,ABCA5,SF3B1,NHLRC2,CAAP1,PRKRA,BCLAF1,PIK3CB,ZFP69,PAN3,CEP350,MED28,PTGES3,CLASP2,ISCA1,DCAF16,ACVR2B,RAB38,SUPT7L,RNH1,RICTOR,ARL6,OSGEPL1,CHORDC1,RBM4,TOGARAM1,FAM76B,PANK2,YAF2,SLC35F2,BRWD3,RBM4B,RBM14,ADNP,WDSUB1,ORC4,TEFM,SURF6,NF1,SPPL2A,PRDM4,THAP9,TRIM33,SPTLC2,WDR20,LRP6,THAP6,SS18L1,SLC35B1,DHX15,DDX17,E2F5,TMEM129,MAP3K13,TMEM9B,UBTD2,ZNF57,FMR1,TLE1,DYRK1A,CTDSPL2,GNPDA2,CEP290,TPD52,TRIP11,RAB11A,TRPM7,SLC25A17,MCM8,MCUR1,IFT46,TRAPPC8,COIL,MAP4K3,MAPKAP1,C12orf76,DLG1,TMED7,ALS2,HEXIM1,ELK4,FUNDC1,DEPDC5,USF3,WDR45B,DLAT,CUL4A,MTX3,UMPS,RASSF8,ATAD1,SS18,DBNDD1,VPS13C,CSNK2A1,RMND5A,NPTN,NAF1,CBR4,CBWD2,TEX10,GOLGA8A,SETD4,BLMH,PIKFYVE,RAB25,CHML,SPAG16,PUM2,LGR4,DHX36,NKTR,BCDIN3D,ZNF17,GPRC5B,CRBN,SLC30A9,ZNF84,PRPSAP1,SLC52A3,CCP110,TUBD1,HOOK1,UTP15,C17orf80,SCNN1A,FRYL,PIAS2,LRRC6,NSUN3,SPG11,COLCA2,SUCLA2,PRPF4B,LIN7C,FGFR2,ATF2,MRFAP1L1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for RP11-9E17.1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

ANXA6

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000277534	ENST00000620414	exon_skip_44998	chr10:110132304-110132400	-9.13	-0.1049	ADD3	ENST00000356080	In-frame
ENSG00000277534	ENST00000620414	exon_skip_64939	chr11:112230207-112230230	-10.58	-0.5568	PTS	ENST00000280362	Frame-shift
ENSG00000277534	ENST00000620414	exon_skip_386291	chr3:108050577-108050602	-9.33	-0.9330	CD47	ENST00000361309	Frame-shift
ENSG00000277534	ENST00000620414	exon_skip_423795	chr4:55888887-55888932	-8.24	-0.3052	EXOC1	ENST00000346134,ENST00000381295	In-frame
ENSG00000277534	ENST00000620414	exon_skip_456460	chr6:17771113-17771218	-12.82	-0.1322	KIF13A	ENST00000259711	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000277534	ENST00000620414	exon_skip_376144	chr3:100311832-100311877	-10.86	-0.3103	TBC1D23	ENST00000394144	In-frame
ENSG00000277534	ENST00000620414	exon_skip_382356	chr3:37091466-37091538	-7.34	-0.4078	LRRFIP2	ENST00000336686	In-frame
ENSG00000277534	ENST00000620414	exon_skip_361434	chr21:25997359-25997416	-10.28	-0.2016	APP	ENST00000346798	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for RP11-9E17.1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000277534	ENSG00000017797	RALBP1	ACC,CHOL,KIRC,KIRP,UVM		KIRC
ENSG00000277534	ENSG00000066468	FGFR2	ACC,CHOL,HNSC,KIRC,UCEC		KIRC
ENSG00000277534	ENSG00000076248	UNG	ACC,CHOL,HNSC,LUAD,LUSC,THCA,THYM,UCS	LUSC
ENSG00000277534	ENSG00000081923	ATP8B1	ACC,BRCA,HNSC,KIRC,LUAD,THYM,UCS		KIRC
ENSG00000277534	ENSG00000108468	CBX1	ACC,CESC,CHOL,HNSC,SKCM,UVM	CHOL
ENSG00000277534	ENSG00000110987	BCL7A	ACC,CESC,CHOL,HNSC,KICH,KIRC	CHOL	KIRC
ENSG00000277534	ENSG00000115233	PSMD14	ACC,CHOL,STAD,TGCT,UCEC,UVM	UCEC
ENSG00000277534	ENSG00000119640	ACYP1	ACC,CHOL,HNSC,LUAD,UVM	CHOL
ENSG00000277534	ENSG00000123892	RAB38	ACC,CHOL,THYM,UCS,UVM	CHOL
ENSG00000277534	ENSG00000133059	DSTYK	ACC,CHOL,KIRC,KIRP,UVM	CHOL
ENSG00000277534	ENSG00000134504	KCTD1	ACC,BLCA,BRCA,CHOL,ESCA,HNSC,KICH,KIRC,KIRP,LUAD,LUSC,OV,PAAD,PCPG,PRAD,SKCM,STAD,THCA,THYM,UCEC,UCS,UVM	CHOL,LUSC,UCEC	KIRC
ENSG00000277534	ENSG00000142330	CAPN10	ACC,CHOL,HNSC,UCS,UVM	CHOL
ENSG00000277534	ENSG00000144445	KANSL1L	ACC,CHOL,LUAD,SKCM,UCEC,UVM	CHOL
ENSG00000277534	ENSG00000148468	FAM171A1	ACC,CESC,CHOL,HNSC,KIRC,KIRP,THYM	CHOL	KIRC
ENSG00000277534	ENSG00000162769	FLVCR1	ACC,CHOL,HNSC,LUAD,TGCT,UVM	CHOL,LUAD
ENSG00000277534	ENSG00000165905	LARGE2	ACC,KICH,KIRC,TGCT,THYM,UCS		KIRC
ENSG00000277534	ENSG00000176834	VSIG10	ACC,CHOL,HNSC,PAAD,TGCT,UVM	CHOL
ENSG00000277534	ENSG00000180921	FAM83H	ACC,CHOL,PAAD,THYM,UCS	CHOL
ENSG00000277534	ENSG00000185917	SETD4	ACC,CHOL,HNSC,THYM,UCEC	CHOL
ENSG00000277534	ENSG00000196950	SLC39A10	ACC,CHOL,ESCA,TGCT,UCEC,UVM	CHOL
ENSG00000277534	ENSG00000198920	KIAA0753	ACC,BRCA,CESC,CHOL,HNSC,LUAD,UCEC,UCS,UVM	CHOL
ENSG00000277534	ENSG00000007545	CRAMP1	BLCA,CHOL,HNSC,KICH,THYM	CHOL
ENSG00000277534	ENSG00000141013	GAS8	BLCA,CHOL,HNSC,THYM,UCS,UVM	CHOL
ENSG00000277534	ENSG00000183943	PRKX	BLCA,CHOL,HNSC,KIRC,LUAD,THYM	CHOL	KIRC
ENSG00000277534	ENSG00000203668	CHML	BLCA,CHOL,HNSC,SKCM,UCEC	CHOL
ENSG00000277534	ENSG00000053770	AP5M1	BRCA,CHOL,KIRC,LUAD,THCA,UCEC,UVM		KIRC
ENSG00000277534	ENSG00000094916	CBX5	BRCA,CHOL,HNSC,KIRC,LUAD,PRAD,UCEC,UVM	CHOL
ENSG00000277534	ENSG00000122970	IFT81	BRCA,CHOL,ESCA,HNSC,THYM,UCEC	CHOL
ENSG00000277534	ENSG00000128833	MYO5C	BRCA,CHOL,HNSC,KIRC,KIRP,PAAD,THYM,UCS	CHOL	KIRC
ENSG00000277534	ENSG00000129295	LRRC6	BRCA,CHOL,THCA,THYM,UCS	CHOL
ENSG00000277534	ENSG00000134709	HOOK1	BRCA,LUAD,THYM,UCEC,UVM	LUAD,UCEC
ENSG00000277534	ENSG00000138036	DYNC2LI1	BRCA,CHOL,ESCA,HNSC,THYM,UCEC,UVM	CHOL
ENSG00000277534	ENSG00000163257	DCAF16	BRCA,CESC,CHOL,HNSC,KIRC,KIRP,LUAD,UCEC,UVM	CHOL
ENSG00000277534	ENSG00000165209	STRBP	BRCA,CESC,CHOL,HNSC,KIRC,KIRP,TGCT,UCEC,UCS,UVM	CESC,UCEC
ENSG00000277534	ENSG00000169118	CSNK1G1	BRCA,CHOL,LUAD,PRAD,UCEC,UVM	CHOL
ENSG00000277534	ENSG00000198589	LRBA	BRCA,CHOL,KIRC,LUAD,THYM,UCS,UVM		KIRC
ENSG00000277534	ENSG00000035141	FAM136A	CESC,CHOL,ESCA,HNSC,STAD,TGCT,UCEC,UVM	CESC,UCEC
ENSG00000277534	ENSG00000104341	LAPTM4B	CESC,CHOL,KIRC,THYM,UVM	CHOL	KIRC
ENSG00000277534	ENSG00000108091	CCDC6	CESC,CHOL,PAAD,THYM,UCEC,UCS,UVM	CHOL
ENSG00000277534	ENSG00000115652	UXS1	CESC,CHOL,ESCA,HNSC,KIRC,KIRP,TGCT,UVM	CHOL	KIRC
ENSG00000277534	ENSG00000134253	TRIM45	CESC,CHOL,HNSC,PAAD,UVM	CHOL
ENSG00000277534	ENSG00000163251	FZD5	CESC,OV,PAAD,UCEC,UCS	UCEC
ENSG00000277534	ENSG00000183723	CMTM4	CESC,CHOL,KICH,KIRC,KIRP,THYM	CHOL	KIRC
ENSG00000277534	ENSG00000196476	C20orf96	CESC,CHOL,ESCA,HNSC,UCS	CHOL
ENSG00000277534	ENSG00000120756	PLS1	CHOL,CHOL,HNSC,HNSC,PAAD,PAAD,UCEC,UCEC	UCEC,UCEC
ENSG00000277534	ENSG00000003147	ICA1	CHOL,KIRC,THYM,UCS,UVM	CHOL
ENSG00000277534	ENSG00000003249	DBNDD1	CHOL,ESCA,PAAD,THYM,UCS	CHOL
ENSG00000277534	ENSG00000011566	MAP4K3	CHOL,HNSC,KIRC,UCEC,UVM	CHOL
ENSG00000277534	ENSG00000046604	DSG2	CHOL,ESCA,KIRC,THYM,UVM	CHOL
ENSG00000277534	ENSG00000058804	NDC1	CHOL,ESCA,HNSC,LUAD,TGCT,UCEC,UVM	LUAD,UCEC
ENSG00000277534	ENSG00000067369	TP53BP1	CHOL,HNSC,KIRC,LUAD,UVM	CHOL
ENSG00000277534	ENSG00000087053	MTMR2	CHOL,LUAD,STAD,UCEC,UVM	CHOL
ENSG00000277534	ENSG00000099219	ERMP1	CHOL,KIRC,KIRP,UCS,UVM	CHOL	KIRC
ENSG00000277534	ENSG00000101276	SLC52A3	CHOL,KIRC,KIRP,PAAD,TGCT,UCS	CHOL	KIRC
ENSG00000277534	ENSG00000102934	PLLP	CHOL,KIRC,PAAD,TGCT,UCS	CHOL
ENSG00000277534	ENSG00000104413	ESRP1	CHOL,KIRC,OV,THYM,UCS	CHOL	KIRC
ENSG00000277534	ENSG00000113441	LNPEP	CHOL,KICH,KIRC,LUAD,PRAD,UCEC,UVM	CHOL
ENSG00000277534	ENSG00000119682	AREL1	CHOL,KICH,KIRC,UCEC,UCS,UVM		KIRC
ENSG00000277534	ENSG00000119888	EPCAM	CHOL,HNSC,KIRC,KIRP,THYM,UCEC,UCS	CHOL,UCEC	KIRC
ENSG00000277534	ENSG00000123094	RASSF8	CHOL,ESCA,KIRC,KIRP,PCPG,TGCT,UVM	CHOL	KIRC
ENSG00000277534	ENSG00000125885	MCM8	CHOL,HNSC,KIRC,LUAD,UCEC,UVM	CHOL,LUAD,UCEC
ENSG00000277534	ENSG00000131437	KIF3A	CHOL,ESCA,KICH,KIRP,UCEC,UVM	CHOL
ENSG00000277534	ENSG00000131941	RHPN2	CHOL,PAAD,THYM,UCEC,UCS	UCEC
ENSG00000277534	ENSG00000132698	RAB25	CHOL,KIRC,PAAD,THYM,UCS	CHOL	KIRC
ENSG00000277534	ENSG00000135052	GOLM1	CHOL,KIRC,KIRP,SKCM,THYM,UVM	CHOL
ENSG00000277534	ENSG00000135108	FBXO21	CHOL,HNSC,KICH,KIRC,THYM,UVM		KIRC
ENSG00000277534	ENSG00000136143	SUCLA2	CHOL,KIRC,TGCT,UCEC,UVM		KIRC
ENSG00000277534	ENSG00000138587	MNS1	CHOL,ESCA,HNSC,KIRC,KIRP,OV	CHOL	KIRC
ENSG00000277534	ENSG00000143061	IGSF3	CHOL,KICH,KIRC,PAAD,THYM	CHOL	KIRC
ENSG00000277534	ENSG00000143153	ATP1B1	CHOL,KIRC,KIRP,SKCM,THYM,UVM	CHOL	KIRC
ENSG00000277534	ENSG00000143502	SUSD4	CHOL,HNSC,KIRC,KIRP,THYM	CHOL	KIRC
ENSG00000277534	ENSG00000143919	CAMKMT	CHOL,ESCA,KIRC,KIRP,LUAD,PAAD,THCA,UCEC,UCS	UCEC
ENSG00000277534	ENSG00000144677	CTDSPL	CHOL,KICH,KIRC,KIRP,UVM		KIRC
ENSG00000277534	ENSG00000152234	ATP5F1A	CHOL,HNSC,KICH,KIRC,KIRP,SKCM,UVM		KIRC
ENSG00000277534	ENSG00000152409	JMY	CHOL,HNSC,KIRC,LUAD,UCEC,UCS,UVM		KIRC
ENSG00000277534	ENSG00000152939	MARVELD2	CHOL,HNSC,KIRC,THYM,UCS		KIRC
ENSG00000277534	ENSG00000159055	MIS18A	CHOL,HNSC,PCPG,UCEC,UVM	UCEC
ENSG00000277534	ENSG00000161328	LRRC56	CHOL,HNSC,TGCT,THYM,UCS	CHOL
ENSG00000277534	ENSG00000162065	TBC1D24	CHOL,KICH,KIRC,KIRP,THYM		KIRC
ENSG00000277534	ENSG00000163281	GNPDA2	CHOL,KIRC,PCPG,THYM,UVM	CHOL
ENSG00000277534	ENSG00000164050	PLXNB1	CHOL,HNSC,KIRC,PCPG,UCS		KIRC
ENSG00000277534	ENSG00000164930	FZD6	CHOL,KIRC,THYM,UCEC,UCS	CHOL
ENSG00000277534	ENSG00000166881	NEMP1	CHOL,HNSC,LUSC,UCEC,UVM	LUSC
ENSG00000277534	ENSG00000167191	GPRC5B	CHOL,KIRC,KIRP,LUAD,THYM	CHOL	KIRC
ENSG00000277534	ENSG00000173801	JUP	CHOL,KIRC,KIRP,PAAD,THYM,UCS	CHOL	KIRC
ENSG00000277534	ENSG00000175029	CTBP2	CHOL,THCA,THYM,UCS,UVM	CHOL
ENSG00000277534	ENSG00000175707	KDF1	CHOL,KIRC,PAAD,THYM,UCS		KIRC
ENSG00000277534	ENSG00000181751	MACIR	CHOL,ESCA,HNSC,KICH,KIRC,PAAD,UCEC,UVM	CHOL
ENSG00000277534	ENSG00000184304	PRKD1	CHOL,KIRC,PRAD,THYM,UVM	CHOL	KIRC
ENSG00000277534	ENSG00000184307	ZDHHC23	CHOL,HNSC,KIRC,LUAD,PAAD,UCEC,UCS	UCEC
ENSG00000277534	ENSG00000184445	KNTC1	CHOL,HNSC,LUAD,LUSC,UCEC	CHOL,LUAD,LUSC,UCEC
ENSG00000277534	ENSG00000184992	BRI3BP	CHOL,ESCA,HNSC,KICH,KIRC,LUAD,THYM,UVM	CHOL,LUAD
ENSG00000277534	ENSG00000188112	C6orf132	CHOL,KIRC,PAAD,TGCT,THYM,UCS	CHOL	KIRC
ENSG00000277534	ENSG00000196659	TTC30B	CHOL,ESCA,HNSC,LUAD,THYM,UCS,UVM	CHOL
ENSG00000277534	ENSG00000198707	CEP290	CHOL,ESCA,HNSC,LUAD,UCEC	CHOL
ENSG00000277534	ENSG00000206053	JPT2	CHOL,PAAD,THYM,UCS,UVM	CHOL
ENSG00000277534	ENSG00000214290	COLCA2	CHOL,HNSC,LUAD,LUSC,THYM	CHOL,LUSC
ENSG00000277534	ENSG00000076554	TPD52	HNSC,KIRC,KIRP,THYM,UCEC	UCEC
ENSG00000277534	ENSG00000111110	PPM1H	HNSC,KIRC,LUAD,LUSC,THYM,UCS,UVM	LUAD	KIRC
ENSG00000277534	ENSG00000111319	SCNN1A	HNSC,KICH,KIRC,THYM,UCS		KIRC
ENSG00000277534	ENSG00000145103	ILDR1	HNSC,KIRC,PAAD,THYM,UCS		KIRC
ENSG00000277534	ENSG00000138018	SELENOI	KIRC,LUAD,TGCT,THYM,UCEC,UVM	LUAD,UCEC
ENSG00000277534	ENSG00000198743	SLC5A3	KIRC,KIRP,PRAD,UCEC,UVM		KIRC

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000277534	ENST00000620414	ANXA6	ENSG00000197043	ENST00000522664	-0.1148	2131	-	CHOL,CESC,UCEC,LUSC

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000277534.1	ENST00000620414.1	122	861	493

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential