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lncRNA: ENSG00000277268 |
Summary for LHX1-DT |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000277268 | Gene symbol | LHX1-DT |
| Gene name | LHX1 divergent transcript | |
| HGNC | 53778 | |
| Entrez ID | 102723471 | |
| Gene type | antisense | |
| Synonyms | RP11-445F12.1|17q12|LHX1-DT | |
| UniProtAcc |
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Structure and expression level for LHX1-DT |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000277268 | 1.499403e+02 | -4.123688e+00 | 4.063949e-01 | -1.014700e+01 | 3.420000e-24 | 2.580000e-23 | DOWN | KIRC |
| ENSG00000277268 | 3.104861e+02 | -2.939516e+00 | 8.613871e-01 | -3.412538e+00 | 6.436100e-04 | 1.604866e-03 | DOWN | KICH |
| ENSG00000277268 | 2.392402e+02 | -2.504014e+00 | 6.156609e-01 | -4.067197e+00 | 4.760000e-05 | 1.547570e-04 | DOWN | KIRP |
| ENSG00000277268 | 5.914609e+01 | 2.739159e+00 | 5.849911e-01 | 4.682394e+00 | 2.840000e-06 | 1.120000e-05 | UP | UCEC |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000277268 | -6.721507e-01 | 5.521261e-13 | KICH | 2.119113e-11 |
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lncRNA-Protein interaction for LHX1-DT |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
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| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| ENSG00000277268 | ENST00000621428 | RP11-445F12.1 | ENSG00000273706 | LHX1 | 23.31 | 95.6209 | P48742 | TF | Predict |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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