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lncRNA: ENSG00000276900

Summary for RP11-467L13.7

Gene summary

Gene information	Ensembl ID	ENSG00000276900
	Gene symbol	RP11-467L13.7
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-467L13.7

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000276900	4.398274e+02	1.163692e+00	3.486921e-01	3.337305e+00	8.459500e-04	6.929956e-03	UP	ESCA
ENSG00000276900	3.361719e+02	1.724221e+00	1.724201e-01	1.000011e+01	1.520000e-23	1.190000e-22	UP	LUSC
ENSG00000276900	2.023839e+02	1.157737e+00	1.386404e-01	8.350647e+00	6.790000e-17	5.480000e-16	UP	LUAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000276900	3.204398e-01	5.288338e-11	LIHC	2.126832e-10

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lncRNA-Protein interaction for RP11-467L13.7

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000276900	ENST00000619086	RP11-467L13.7	ENSG00000107077	KDM4C	84.46	94.5442	Q9H3R0	Epi	NA
ENSG00000276900	ENST00000619086	RP11-467L13.7	ENSG00000146872	TLK2	72.29	94.1237	Q86UE8	Epi	NA
ENSG00000276900	ENST00000619086	RP11-467L13.7	ENSG00000108468	CBX1	49.18	92.4381	P83916	Epi	NA
ENSG00000276900	ENST00000619086	RP11-467L13.7	ENSG00000178913	TAF7	35.11	91.4458	Q15545	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000276900	ENST00000619086	RP11-467L13.7	ENSG00000147789	ZNF7	57.84	91.8824	P17097	TF	NA
ENSG00000276900	ENST00000619086	RP11-467L13.7	ENSG00000198040	ZNF84	53.48	92.4418	P51523	TF	NA
ENSG00000276900	ENST00000619086	RP11-467L13.7	ENSG00000184939	ZFP90	32.39	92.3625	Q8TF47	TF	NA
ENSG00000276900	ENST00000619086	RP11-467L13.7	ENSG00000166526	ZNF3	16.84	92.125	P17036	TF	NA
ENSG00000276900	ENST00000619086	RP11-467L13.7	ENSG00000154957	ZNF18	14.04	91.4466	P17022	TF	NA
ENSG00000276900	ENST00000619086	RP11-467L13.7	ENSG00000144161	ZC3H8	9.91	92.1941	Q8N5P1	TF,RBP	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000276900	ENST00000619086	RP11-467L13.7	ENSG00000004534	RBM6	92.93	92.1721	P78332	RBP	NA
ENSG00000276900	ENST00000619086	RP11-467L13.7	ENSG00000134597	RBMX2	23.83	90.5527	Q9Y388	RBP	NA

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lncRNA-DNA interaction for RP11-467L13.7

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

WRAP73,IFFO1,GSDMB,IST1,C11orf1,VAMP1,GABPB2,SLC26A11,RBM39,PRPSAP2,UBE2I,SH2B1,DYNC2LI1,ZCCHC8,FAM98C,MZF1,CEP57,UNK,NRF1,H3-3B,TTC31,AKAP8,ITFG2,PPOX,RRNAD1,CFAP20,MAPK8IP3,KAT8,NCAPD2,RHNO1,DMTF1,PIGL,RNF34,UIMC1,SMARCE1,UNKL,MKS1,RP11-523H20.5,C1orf35,ATG12,CCDC174,KIAA0895L,MIF4GD,INO80D,LMBR1L,CDK5RAP1,TASP1,HSDL1,MUTYH,ENOPH1,DCAF8,SLX4IP,C20orf96,C2CD5,DDX55,PHYKPL,CAPN10,VMP1,CENATAC,FAM111A,CLK3,RNPC3,OGA,METTL21A,WDR5B,SMUG1,INCA1,MSANTD2,THOC1,TUBGCP6,RECQL5,ANKRD42,ANKMY1,WDR59,CCDC59,OSER1,CCDC77,CHTOP,CLK4,AMN1,PHF12,SUPT7L,TERF2IP,ZBED5,H2AJ,CDCA4,TM2D3,CENPT,KLHL42,IFT74,S100PBP,COG4,OSBPL7,TAZ,SPG7,H2BC5,POGZ,KAT2A,TAF7,FGFR1OP2,ACBD4,SIAH1,LTO1,PHC1,RCCD1,PLA2G6,TAF1C,CLK2,ZBTB3,MBD1,TEFM,DCP1B,MED6,C12orf43,POLG2,AAAS,PRIMPOL,CEP89,METTL17,SETD6,CPSF7,GGNBP2,POLI,METTL23,CLK1,TMEM231,C17orf75,RESF1,EZH1,GABPB1,MRNIP,KIAA0753,RABL2A,NASP,ELMOD3,OFD1,PCED1A,ACYP1,GEMIN6,ING4,INTS13,HAUS5,RAD52,MTA3,SLC4A1AP,DYNLT2,CBX1,MIS12,ZC3H8,HEXIM2,FBXL20,HGS,RSRC2,FBXL12,TTF1,HSF4,INO80E,ARGLU1,C4orf46,ANKRD49,IFT46,CCNL1,TMEM107,RGL3,TMEM186,H2BC21,KRAS,ANKRA2,KCTD18,TADA2A,FNBP4,C12orf76,ORMDL1,FAM228B,DHODH,KRI1,YTHDC1,MEAF6,NUP88,RSRP1,CCDC121,SSH2,NEK8,TIGD1,CETN3,RBM45,NSD2,DDX51,YAE1,E2F4,TRIM52,DYRK4,USP40,GEMIN2,C1orf52,DEDD,CDK11A,CWC25,SPOP,TTC32,SUMO2,TIA1,LRRC37B,NIT1,ATG4B,MPZ,UPF3B,UTP6,LMNTD2,NSUN6,ZNF3,SPATA33,TMEM218,IFT20,ZNF18,PAN2,DIDO1,DDX11,CDK2,CYP2R1,ERCC3,C2orf68,FBXL8,MRE11,SETD4,CNOT2,NEIL1,TRMT13,VPS33B,RBM48,GRIPAP1,PSMC3IP,AKTIP,AARSD1,DUSP28,PUM2,BOLA1,CIR1,CRAMP1,LUC7L,ARHGAP33,MBTD1,BCDIN3D,FAM222B,COA5,SEPSECS,BRD8,EPM2AIP1,SLC25A45,ZNF84,GAS8,BBS4,C14orf93,LRSAM1,PSME3IP1,TUBD1,CCDC24,TRA2A,NSMCE4A,WDR33,PDCD6,UBXN11,PRPF40B,BUD13,HINFP,NR2C1,OTUD5,CERS5,APBB3,CNTROB,MRPL38,LIG1,WBP1,CCDC57,RABL2B,TEPSIN,AMZ2,SIRT7,MRFAP1L1,IQCC

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-467L13.7

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-467L13.7

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000276900	ENSG00000064102	INTS13	LGG,LUAD,LUSC,THYM,UVM	LUSC

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000276900.1	ENST00000619086.1	91	27	302

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential