 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RPAP2,PMM2,CPLANE1,OXNAD1,MFSD8,ATL2,DNAJC27,RB1CC1,DYNC2LI1,PDE5A,DCP1A,CCDC88A,N4BP2L2,DCLRE1C,SLF2,DMTF1,ZDHHC23,HLTF,PHF10,SENP1,GPATCH11,GPCPD1,ZNF24,WDCP,ZFP14,RHOT1,CENATAC,WDR5B,ST7L,KLHL28,MSANTD2,CCDC14,NUP58,RSF1,AFF4,MYO9A,THAP2,CLK4,USP30,FAM133B,ZBED5,SETD2,UBA2,TBK1,TTC14,KLHL42,KNTC1,CREB1,SUDS3,ADSS2,TRIM59,EXOC8,DPY19L4,CAPN7,SIAH1,SMAD2,DNAJC2,OGT,ARIH1,ZFP1,GZF1,NCBP1,MYEF2,ARID4B,ASH1L,POLG2,CLOCK,NFIA,TUT4,RBM15,RIC8B,ANAPC10,RPAP3,BBIP1,THOC2,CLK1,ATXN7,GABPB1,RABL2A,GTF3C2,OFD1,INTS6,RFX7,TMEM39A,MSH6,HCFC2,BMI1,SLC4A1AP,MBD5,CBX1,MIER1,SKP2,RSRC2,TTC21B,CAMKMT,NPAT,ZNHIT6,RAB3GAP2,NAA25,RDH14,NEMP1,SLC30A4,SETD5,EML4,ZFP62,MIS18BP1,GON4L,CDC27,CERS6,GTDC1,CHIC1,ORMDL1,CHD9,BRAF,YTHDC1,TOPBP1,PIGN,AGO3,ORC2,PRPF38A,SLC35F5,SBNO1,PHC3,LRRC37B,DHX35,SKIL,INTS2,SUPT20H,RSRC1,CCDC191,UBXN2A,TAF1A,SMARCAD1,PDK1,PKN2,SNX4,STYX,METTL4,CIR1,ZFC3H1,MBTD1,N4BP2L1,SP3,AP4E1,MAN1A2,HDAC8,ANKRD13C,CCNT1,VCPKMT,TTC3,CEP192,PIK3C2A,CSNK2A2,EIF2AK2,ZNF69,PGGT1B,ATF7IP,RCHY1,SELENOI,MARCHF6,SWT1,LTN1,HERC4,SKA2,TMEM168,RAB28,ATM,THADA,FLVCR1,FANCL,CDK13,DPY19L3,SMG7,SMURF2,LCORL,CEP57,PAWR,MIB1,CEP68,HOOK3,NEMP2,SPICE1,PPWD1,RSBN1,PRPF40A,SLC30A7,GSK3B,SASS6,RBM27,PIBF1,CLASP1,LAMTOR3,INO80D,NHLRC3,ICE2,SH3YL1,ASTE1,CRLF3,PGAP1,KPNA1,CIP2A,KRIT1,METTL21A,PARP11,DNAJC21,GCFC2,THOC1,ZNF25,UBA6,ACAP2,SESN3,ZZZ3,DENND6A,ODR4,UGGT2,ZMYM5,TAMM41,SNRNP48,RC3H1,CBLB,OPA1,XPO4,MBNL3,ZNF44,TRIM13,FGFR1OP2,CCDC138,RIMKLB,BCLAF3,DNAJB14,PPM1B,PUS7L,IFT80,ZCCHC14,CEP83,GGNBP2,LIN54,UBN2,DDX6,LRIG2,ABHD18,NEMF,RTTN,REV3L,SMCHD1,CREBRF,MTA3,NBPF11,UBAP2L,PRKD3,CEP70,ZC3H8,LATS1,DGKE,ANKRD49,PAXBP1,MBLAC2,SLC38A9,GPR27,EPS15,COA1,FNBP4,GTF2A1,BOD1L1,PLEKHA8,RSRP1,COP1,RAB33B,MLLT10,CHD2,NVL,GOLGB1,PEX13,MYNN,METTL14,RPE,OTUD4,ZNF720,SLC39A10,UPF3B,LINS1,QKI,ZFR,ROCK2,LDAH,ANKRD26,SCAF11,PUS10,GPBP1,C2orf68,MRE11,GK5,MFF,NDUFAF7,TOR1AIP2,TRMT13,GDAP2,TTBK2,ZFHX3,CCDC82,ARID4A,SBF2,LPP,RNF115,ARPP19,VPS54,SMAD4,CBX5,KIF3A,RYK,EPM2AIP1,SCAMP1,WDR27,FAM104A,HECTD4,GTPBP8,KHDC4,CERS5,TPR,PNISR,GEN1,SFPQ,CEPT1,USP45,CARD8,PIK3CA,PSMD12,NCBP2,NUCKS1,ATAD2B,ZNF10,FAM126B,LRIF1,MED17,ESCO1,CEP63,RALGAPA1,TMX3,ANGEL2,ROCK1,RIT1,MYSM1,N4BP2,FAM214A,MED13L,ARID2,DARS1,ASPM,STAM2,TAF1D,KATNBL1,TAF4,SPIN3,TASP1,IFT88,GABPA,SLX4IP,HEATR1,SUGT1,GTF3C3,PPP1R12A,AFTPH,ZMAT3,PBRM1,TET3,TTC30B,BNIP2,PRR14L,RNPC3,ANKRD10,BARD1,RPS6KB1,PPP4R3B,OBI1,LRCH3,UBXN7,GABBR1,CHTOP,KANSL3,DHX57,CCSAP,SIKE1,FBXO22,DENND4A,RLIM,MPHOSPH9,CCNT2,PTCD3,EEA1,NRAS,UBE2W,ZNF91,CHD6,RAD1,AGO2,BRWD1,NIN,ARL13B,CSTF3,RBM26,CLDND1,PURB,CCNH,RBM25,CEBPZOS,RO60,TBCK,BBS10,ZFP30,DPY30,SP4,SPRTN,KANSL1L,ARL5A,POLI,TTC30A,LNPEP,PRPF39,ITSN2,TMEM41B,HEATR5B,E2F6,EPC1,LCOR,DDHD1,MAP4K5,SLC4A7,GORAB,MAP3K7,FBXL20,CEP44,CENPC,RBM41,OTUD6B,NEPRO,ABHD13,POLR2D,CCNL1,TLK1,USP37,GMCL1,ASB7,C2orf49,POLK,PLEKHA3,CELF1,TMEM161B,PRKAA1,CCDC121,KRR1,RBM45,HSPBAP1,PYGO1,SPATA5,R3HDM2,PMS1,KIF7,RNFT1,DENND1B,ADAM17,DCUN1D1,WDR36,TIA1,ZNF83,MOSMO,RPS6KC1,KANSL1,NSUN6,C5orf34,TMTC3,RFX3,ZNF8,DNMT3A,BMPR2,ERCC3,FAM161A,FASTKD2,HELZ,LIPT1,CWF19L2,STK4,ELF2,LUC7L,ZNF43,PTBP3,LUC7L2,IRF2BP2,ERCC8,TMCC1,UBE2V1,CENPJ,ARL5B,TRA2A,MAPKAPK5,KMT2A,TPP2,REV1,SLC10A7,BROX,NR2C1,APPL1,SOS1,RUFY2,JMY,RBM33,NOL8,CEBPZ,AGAP6,HACE1,DSTYK,GABPB2,MPHOSPH10,ATXN7L1,MOB1A,RBM39,ODF2L,C21orf91,TAF9B,GPATCH8,TNPO1,PGS1,MSL2,STAG1,TMEM267,ZCCHC8,TBL1XR1,GXYLT1,KAT7,WASHC4,PDS5A,ZC3H7A,RABGAP1L,ATRX,FEZ2,MAP3K2,RPRD1A,GPATCH2,NOL10,RBM28,DCAF8,IKZF5,ABCA5,SF3B1,NHLRC2,FRA10AC1,PAK2,RUFY3,BCLAF1,ZFP69,PAN3,CEP350,MED28,RNF168,PIGM,KMT2E,CLASP2,CWC22,C2orf42,DCAF16,PAQR3,SUPT7L,MORC3,PSME4,MINDY2,RICTOR,TM2D3,OSGEPL1,CHORDC1,S100PBP,RBM4,SCLT1,DPP8,USP24,KAT6B,TOGARAM1,FAM217B,FAM76B,POGZ,BRWD3,TRIM23,RBM4B,DTWD1,EXOG,YEATS2,ADNP,MAP3K12,ORC4,SCAI,TEFM,GAN,FUBP1,NF1,SPIN4,THAP9,TRIM33,SCAPER,THAP6,KIDINS220,SS18L1,C12orf66,ABL2,SENP7,AQR,RSBN1L,FMR1,RAD52,ASXL2,STRN,CTDSPL2,GNPDA2,CEP290,NEK1,TRPM7,SMC6,EXOC6B,COIL,CNBP,GPALPP1,MAP4K3,WDR41,C16orf87,PHIP,FAM228B,DLG1,ELK4,KLC1,TIGD1,TRIM52,LRRC58,PPP1R21,USF3,SUPT3H,FBXO11,TTC13,BBS9,STK36,TTC32,MTX3,TM2D1,GOLGA8B,YOD1,HP1BP3,ALPK1,STRADA,VPS13C,ZFX,CBR4,RMND5A,CBWD2,GOLGA8A,TEX10,APPBP2,GNAI3,C1D,FKTN,POC1B,CNOT2,TPRKB,TSNAX,PIKFYVE,CHML,DUSP28,PUM2,TYW5,DHX36,NKTR,CEP162,RBMS1,RAD18,ZNF17,TRMT61B,TTLL3,TUBE1,CEP170,ZNF84,BAZ2B,CCP110,TUBD1,WDR33,TRA2B,FRYL,PCMTD1,PIAS2,CRIPT,JMJD1C,NSUN3,PDCD7,USPL1,PRPF4B,LIN7C,TET2,CFAP97,ATF2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | DCAF8,KIDINS220,TRIM33,ZYG11B,NOL10,ATF7IP,N4BP2L1,SOCS5,OSGEPL1,WDR60,PGS1,XPO4,EML4,ORC2,TOR1AIP2,REST,CCDC18,CBFB,ALPK1,GORAB,BNIP2,ITCH,ARL13B,TRIM23,CERS6,FBXO11,STX16,RNF219,SENP2,CASP8AP2,CCDC138,PGAP1,KANSL1L,TAF1B,MSL2,MOB1A,MBNL1,ZFR,SLC4A1AP,GPCPD1,ATP2C1,UBXN7,MYNN,LDAH,ANKRD13C,FBXL20,TET2,FAM133B,CAMSAP2,SUPT7L,PIK3C3,RIF1,CELF1,C12orf66,ZC3H6,SLC4A7,ATL2,LCORL,TMA16,ZC3H11A,MFN1,YOD1,CNBP,MPHOSPH10,CENPJ,TRIO,LRRC57,KIAA0907,MLLT10,KIF7,STRADA,MPHOSPH9,ABHD18,TLK1,ANKRD26,ZFHX3,PRKD3,C2orf68,SPICE1,NCOA1,RALGAPA1,MRPL42,IFT81,ANGEL2,MOB1B,NRAS,CDK13,MFSD8,RUFY2,ZBED6,TPP2,CAMKMT,S100PBP,CEP135,ATAD2B,RLIM,TMX3,SENP5,SRSF1,PAN3,FAM199X,ERCC3,UGGT2,PHF14,ZMAT3,NFIA,MED28,MDM4,VANGL2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ETHE1,AP1B1,RPS6KA1,ADGRE5,UQCRC1,ATP6V0D1,LRP10,AKR1A1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000276334 | ENST00000610331 | exon_skip_62840 | chr11:70421469-70421580 | -13.22 | -0.1309 | CTTN | ENST00000301843 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000276334 | ENST00000610331 | exon_skip_384139 | chr3:49278813-49278902 | -15.50 | -0.2153 | USP4 | ENST00000265560 | Frame-shift | | ENSG00000276334 | ENST00000610331 | exon_skip_66185 | chr11:124626472-124626609 | -15.68 | -0.1170 | TBRG1 | ENST00000441174 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000276334 | ENSG00000066279 | ASPM | ACC,COAD,LAML,LUAD,LUSC | COAD,LUAD,LUSC | | | ENSG00000276334 | ENSG00000068878 | PSME4 | ACC,CESC,COAD,ESCA,KIRC,LAML,LUAD,LUSC,SARC,UCS | LUSC | | | ENSG00000276334 | ENSG00000070950 | RAD18 | ACC,COAD,KIRC,LAML,LUAD | COAD | | | ENSG00000276334 | ENSG00000108468 | CBX1 | ACC,CESC,ESCA,GBM,LUSC,OV,PCPG,STAD | LUSC | | | ENSG00000276334 | ENSG00000115761 | NOL10 | ACC,CESC,LAML,LUSC,UCS | LUSC | | | ENSG00000276334 | ENSG00000116062 | MSH6 | ACC,CESC,ESCA,LAML,LUSC,MESO | LUSC | | | ENSG00000276334 | ENSG00000119878 | CRIPT | ACC,CESC,ESCA,LAML,LGG,LUSC,PCPG,UCS | LUSC | | | ENSG00000276334 | ENSG00000132680 | KHDC4 | ACC,BRCA,COAD,ESCA,GBM,LGG,LUAD,LUSC,MESO,PCPG,STAD | LUAD,LUSC | | | ENSG00000276334 | ENSG00000138018 | SELENOI | ACC,CESC,COAD,ESCA,KIRC,LAML,LUAD,LUSC | LUAD,LUSC | | | ENSG00000276334 | ENSG00000139324 | TMTC3 | ACC,CESC,COAD,KIRC,LAML,LUAD,LUSC,UCS | LUSC | | | ENSG00000276334 | ENSG00000152256 | PDK1 | ACC,BRCA,COAD,KIRC,LAML,LUAD | LUAD | | | ENSG00000276334 | ENSG00000154429 | CCSAP | ACC,BRCA,COAD,ESCA,KIRC,LAML,LUAD,LUSC | COAD | | | ENSG00000276334 | ENSG00000156876 | SASS6 | ACC,BRCA,COAD,GBM,KIRC,LAML,LUAD,LUSC,UCS | LUAD,LUSC | | | ENSG00000276334 | ENSG00000162769 | FLVCR1 | ACC,COAD,GBM,KIRC,LAML,LUAD,LUSC,PCPG,UCS | LUAD,LUSC,PCPG | | | ENSG00000276334 | ENSG00000163026 | WDCP | ACC,CESC,ESCA,GBM,LUSC,MESO,OV,UCS | LUSC | | | ENSG00000276334 | ENSG00000163507 | CIP2A | ACC,COAD,ESCA,LAML,LUSC | COAD,LUSC | | | ENSG00000276334 | ENSG00000163872 | YEATS2 | ACC,COAD,ESCA,LUAD,LUSC | LUSC | | | ENSG00000276334 | ENSG00000166012 | TAF1D | ACC,BRCA,COAD,GBM,KIRC,LUAD,PCPG,STAD,THCA | COAD,LUAD | | | ENSG00000276334 | ENSG00000166813 | KIF7 | ACC,ESCA,GBM,LGG,LUSC | LUSC | | | ENSG00000276334 | ENSG00000166881 | NEMP1 | ACC,COAD,ESCA,KIRC,LUAD,LUSC | LUSC | | | ENSG00000276334 | ENSG00000172244 | C5orf34 | ACC,BRCA,CESC,COAD,LAML,LUAD | COAD,LUAD | | | ENSG00000276334 | ENSG00000182628 | SKA2 | ACC,LAML,LGG,LUSC,PCPG | PCPG | | | ENSG00000276334 | ENSG00000196950 | SLC39A10 | ACC,COAD,ESCA,KIRC,LAML,LUAD,STAD | COAD | | | ENSG00000276334 | ENSG00000203668 | CHML | ACC,COAD,ESCA,KIRC,LUAD | LUAD | | | ENSG00000276334 | ENSG00000256525 | POLG2 | ACC,COAD,ESCA,GBM,LGG,LUAD,LUSC,STAD | LUAD | | | ENSG00000276334 | ENSG00000018189 | RUFY3 | BRCA,COAD,ESCA,KIRC,LUAD,PCPG,STAD | PCPG | | | ENSG00000276334 | ENSG00000075711 | DLG1 | BRCA,CESC,COAD,ESCA,KIRC,LAML,LUAD,LUSC | LUSC | | | ENSG00000276334 | ENSG00000101639 | CEP192 | BRCA,COAD,GBM,KIRC,LAML,LUAD,PCPG | PCPG | | | ENSG00000276334 | ENSG00000102595 | UGGT2 | BRCA,COAD,KIRC,LUAD,MESO | COAD | | | ENSG00000276334 | ENSG00000111300 | NAA25 | BRCA,COAD,GBM,KIRC,LAML,LUAD,LUSC | COAD | | | ENSG00000276334 | ENSG00000114331 | ACAP2 | BRCA,CESC,COAD,ESCA,KIRC,LAML,LUAD,LUSC,UCS | LUSC | | | ENSG00000276334 | ENSG00000119772 | DNMT3A | BRCA,CESC,ESCA,KIRC,LUSC,PCPG,STAD | LUSC | | | ENSG00000276334 | ENSG00000125772 | GPCPD1 | BRCA,COAD,GBM,KIRC,LUAD,STAD,THCA | COAD | | | ENSG00000276334 | ENSG00000128881 | TTBK2 | BRCA,CESC,KIRC,LAML,LUAD,MESO,PCPG,SARC | PCPG | | | ENSG00000276334 | ENSG00000132953 | XPO4 | BRCA,COAD,KIRC,LAML,LUAD | COAD | | | ENSG00000276334 | ENSG00000136891 | TEX10 | BRCA,COAD,ESCA,KIRC,LAML | COAD | | | ENSG00000276334 | ENSG00000140650 | PMM2 | BRCA,COAD,KIRC,LAML,LUAD | LUAD | | | ENSG00000276334 | ENSG00000145495 | MARCHF6 | BRCA,CESC,COAD,KIRC,LUAD,PCPG,SARC,STAD | PCPG | | | ENSG00000276334 | ENSG00000151849 | CENPJ | BRCA,COAD,ESCA,KIRC,LUAD,LUSC,STAD | COAD,LUSC | | | ENSG00000276334 | ENSG00000152520 | PAN3 | BRCA,COAD,ESCA,KIRC,LUAD,MESO,PCPG,STAD | COAD | | | ENSG00000276334 | ENSG00000155100 | OTUD6B | BRCA,COAD,ESCA,KIRC,LAML | COAD | | | ENSG00000276334 | ENSG00000163029 | SMC6 | BRCA,CESC,COAD,ESCA,KIRC,LAML,LUAD,LUSC,MESO,OV,STAD | LUSC | | | ENSG00000276334 | ENSG00000163960 | UBXN7 | BRCA,CESC,COAD,ESCA,KIRC,LAML,LUAD,LUSC,MESO,STAD | LUSC | | | ENSG00000276334 | ENSG00000164118 | CEP44 | BRCA,COAD,GBM,KIRC,LAML,LGG,LUAD,PCPG,STAD | PCPG | | | ENSG00000276334 | ENSG00000175265 | GOLGA8A | BRCA,COAD,ESCA,LUAD,LUSC,STAD | COAD,LUSC | | | ENSG00000276334 | ENSG00000177565 | TBL1XR1 | BRCA,COAD,ESCA,KIRC,LAML,LUAD,LUSC | LUSC | | | ENSG00000276334 | ENSG00000178295 | GEN1 | BRCA,CESC,COAD,ESCA,LAML,LUAD,LUSC,MESO,OV,PCPG | LUAD,LUSC,PCPG | | | ENSG00000276334 | ENSG00000184445 | KNTC1 | BRCA,COAD,ESCA,GBM,KIRC,LAML,LUAD,LUSC | COAD,LUAD,LUSC | | | ENSG00000276334 | ENSG00000184465 | WDR27 | BRCA,COAD,ESCA,GBM,KIRC,LGG,STAD | COAD | | | ENSG00000276334 | ENSG00000197121 | PGAP1 | BRCA,CESC,COAD,KIRC,LUAD,LUSC,SARC | LUSC | | | ENSG00000276334 | ENSG00000215252 | GOLGA8B | BRCA,COAD,ESCA,GBM,KIRC,LUAD,STAD | COAD | | | ENSG00000276334 | ENSG00000261609 | GAN | BRCA,COAD,GBM,LAML,LUAD,LUSC | LUSC | | | ENSG00000276334 | ENSG00000114503 | NCBP2 | CESC,ESCA,GBM,LGG,LUSC,STAD,THCA,UCS | LUSC | | | ENSG00000276334 | ENSG00000134313 | KIDINS220 | CESC,COAD,LUAD,OV,PCPG,SARC,STAD,UCS | PCPG | | | ENSG00000276334 | ENSG00000170264 | FAM161A | CESC,ESCA,GBM,KIRC,LUSC,OV,PCPG | LUSC,PCPG | | | ENSG00000276334 | ENSG00000174891 | RSRC1 | CESC,COAD,ESCA,KIRC,LAML,LUAD,LUSC | LUSC | | | ENSG00000276334 | ENSG00000198836 | OPA1 | CESC,COAD,ESCA,KIRC,LAML,LUAD,LUSC,UCS | LUSC | | | ENSG00000276334 | ENSG00000071794 | HLTF | COAD,ESCA,GBM,LUAD,LUSC | LUSC | | | ENSG00000276334 | ENSG00000119285 | HEATR1 | COAD,KIRC,LUAD,LUSC,UCS | COAD,LUAD,LUSC | | | ENSG00000276334 | ENSG00000139496 | NUP58 | COAD,KIRC,LAML,LUAD,PCPG | COAD | | | ENSG00000276334 | ENSG00000139597 | N4BP2L1 | COAD,KIRC,LUAD,PCPG,THCA | PCPG | | | ENSG00000276334 | ENSG00000143498 | TAF1A | COAD,KIRC,LUAD,LUSC,UCS | COAD,LUSC | | | ENSG00000276334 | ENSG00000149212 | SESN3 | COAD,KIRC,LUAD,LUSC,PCPG | LUSC,PCPG | | | ENSG00000276334 | ENSG00000163006 | CCDC138 | COAD,ESCA,GBM,LAML,LUAD,LUSC,MESO | LUSC | | | ENSG00000276334 | ENSG00000163781 | TOPBP1 | COAD,ESCA,KIRC,LUAD,LUSC | LUSC | | | ENSG00000276334 | ENSG00000174206 | C12orf66 | COAD,KIRC,LUAD,LUSC,UCS | LUSC | | | ENSG00000276334 | ENSG00000186767 | SPIN4 | COAD,KIRC,MESO,PCPG,THCA | COAD,PCPG | | | ENSG00000276334 | ENSG00000187325 | TAF9B | COAD,GBM,KIRC,LAML,LUAD,PCPG | PCPG | | | ENSG00000276334 | ENSG00000196227 | FAM217B | COAD,ESCA,KIRC,LAML,OV,PCPG,STAD | PCPG | | | ENSG00000276334 | ENSG00000204271 | SPIN3 | COAD,ESCA,KIRC,LUAD,MESO,PCPG,STAD | COAD | | | ENSG00000276334 | ENSG00000213186 | TRIM59 | COAD,ESCA,LAML,LUAD,LUSC | COAD,LUAD,LUSC | | | ENSG00000276334 | ENSG00000101452 | DHX35 | ESCA,LUSC,MESO,PCPG,STAD | LUSC | | | ENSG00000276334 | ENSG00000125351 | UPF3B | ESCA,GBM,LAML,LUSC,PCPG,STAD | LUSC | | | ENSG00000276334 | ENSG00000139625 | MAP3K12 | ESCA,LUAD,MESO,PCPG,STAD | PCPG | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000276334 | ENST00000610331 | ADGRE5 | ENSG00000123146 | ENST00000358600 | -0.1071 | 798 | - | LUSC,LUAD |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000276334.1 | ENST00000610331.1 | 58 | 310 | 486 |
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