 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ARHGEF1,MAD2L2,VAMP1,MFSD8,ABHD17A,NAPRT,CIRBP,RNF166,MZF1,SHARPIN,MAPK8IP3,SRP19,TMUB1,PPP2R3B,SNRPA,DTYMK,TRAPPC2L,CHKA,COMMD7,TTC14,PPP1R3E,ECHDC2,COX19,VKORC1,MPLKIP,SSU72,PSIP1,ACAD10,OFD1,RPS28,FCHSD1,TMEM243,CFAP298,APBA3,RPL35,MIIP,LPAR2,RPP38,C18orf21,C12orf73,FUZ,CDK11A,SYMPK,DCUN1D2,EIF2B1,MRPL41,GIGYF1,CCDC167,HMGN3,NOL3,SEC31B,RABL6,CIR1,PDRG1,ARHGAP33,DMAC2L,ELOF1,HEXD,PTRHD1,MCRIP1,MRPL52,FANCL,NMRAL1,COX6B1,PHKA2,C1orf159,NDUFS8,DDX56,FAM98C,UBE2G2,IP6K2,RPL23,INO80C,GUK1,BIVM,C20orf96,HSCB,RASAL3,ARFGAP1,UCHL3,AP1G2,RPL13A,LSM3,CCDC59,NUBP2,RALGPS2,SRP14,STYXL1,NPDC1,RIMKLB,PIDD1,JTB,AP5Z1,LRIG2,PCED1A,MVB12A,IKBKB,POLRMT,ANKRD49,PAXBP1,SLC35C2,NXT1,CRACR2B,ATG14,FOXP1,TRPT1,ANKLE2,PCSK4,DDX11,NDUFAF7,PARVG,ZNF862,GLYCTK,IDUA,NLRP1,SCAND1,COX14,PPCDC,KHDC4,MIER2,RALY,FHOD1,ATP5IF1,DUT,NDUFS6,PYM1,NUDC,RASSF1,MYPOP,ANGEL2,ATXN7L2,STARD3,MSTO1,TJAP1,TAF1D,MKS1,CEP95,EML3,DMPK,FAM167B,GABBR1,TIMM9,TFAP4,MIEN1,KANSL3,MED25,TP53I13,ARMC5,SNU13,PMF1-BGLAP,RBM26,SNRPD3,RPL36AL,CYBC1,CEBPZOS,MRPL11,TMEM258,GEMIN6,PHF1,HDAC10,HSF4,ATRAID,NOXA1,RGL3,MICALL2,HSPBAP1,SAC3D1,R3HDM2,MZT2A,PSMG4,PBX4,TIA1,IFI27L1,BRAT1,CERKL,PSMG3,UQCR10,SAYSD1,DTX3,ZMYND19,MTG2,RNF215,MAPK11,NAT9,UBA7,ABHD14A,LUC7L,LSM2,LRSAM1,ATP5PF,TOMM7,CRTC2,AMY2B,CYTH2,C8orf76,B9D2,NOP53,RBM33,NDUFB10,WRAP73,PRDX5,SH3BGRL3,SLC25A27,FHIT,SERGEF,HRAS,FZR1,TBC1D10C,SAMD10,CD52,MUTYH,MFSD10,SRM,RPL27,PMF1,ZC3HC1,LRRC75B,CFAP410,DTWD1,TAF1C,LCAT,TEFM,RNASEH2B,UBL5,RPS8,RPS11,THAP9,SKAP1,CHFR,MTRF1,PRAF2,TEDC1,ANO9,WASHC1,KLC1,PTMS,GPS2,NOL12,MBD6,MOB2,COMMD6,SPATA33,ACP6,NLRC3,LZTS2,EMC9,DUSP28,BOLA1,VPS16,PLEKHO1,TTLL3,TUBE1,RHBDD3,P3H1,SPSB2,LRP5L,TFPT,SH3GLB2,ANKRD13D,SIRT7,B3GNTL1,ARL16,UXT,SLIRP,ZSWIM9,TNFRSF4,NUP43,PET100,DYNC2LI1,SART1,DYNC2I2,BCS1L,DMTF1,HINT2,LMBR1L,B3GAT3,NDUFA11,ASPRV1,CENATAC,SMUG1,WDR54,SAFB2,LIMS2,SURF2,ZBED5,INPP5K,CDK2AP2,SLC2A11,GATD1,SPG7,NAA80,SIGIRR,BRICD5,USE1,TMEM208,PDE7A,CLK2,LYRM4,POLG2,MST1,PSENEN,JAK3,CTC1,MAD1L1,ITGB3BP,GABPB1,NASP,ANKRD39,RPAIN,MPST,PAOX,ACYP1,MRPS34,IFT172,CTU2,ELMO3,TSSC4,PFDN6,NAPB,C3orf62,ALKBH2,TMEM160,PARL,AGER,C1orf52,PAFAH1B3,NXF1,PAN2,PFDN5,DUS3L,THEM4,ARFGAP2,MLF2,KLHL17,N4BP2L1,DNASE1,SDHAF2,HDAC8,RPL23A,CCDC24,UQCRHL,ALKBH3,THOC7,PCYT2,IQCC,FAAP100,MMAB,SLC27A5,MRPL55,EMG1,SH2B1,RANBP3,STK11,SNRNP25,DGKA,NDUFB11,C19orf53,EIF2B4,MRPL28,RANBP1,GLMN,WDR59,SURF1,ACBD6,TNK2,GTPBP6,TMEM138,LTO1,TRAF1,CCDC106,NELFE,METTL23,EXD3,NFKBID,GSDMD,STX8,EVA1B,EHMT2,ELP5,DYNLT2,CCHCR1,PRMT7,INPP5E,PHF11,VPS4A,ODF3B,HEMK1,UPF3B,FRS3,FBXL8,GNRH1,PSMG2,KRTCAP2,POP5,MYL5,METTL26,UCKL1,NAP1L4,PTCD1,EP400P1,HPS4,TRIOBP,USP45,CARD8,SRA1,ENKD1,ASCC2,CPTP,LRRC14,BLOC1S1,ZBTB8OS,RPS27,BICRA,CHTF18,NDUFV1,TFEB,NAT14,CCDC174,ACAP1,CDK5RAP1,MARCHF9,NPRL2,KLHDC1,VAMP8,FBXO46,C14orf28,CCDC77,ZDHHC8,SLC66A1,BCAT2,SGSM3,VILL,WDR45,DHRS12,SEPTIN1,UBALD1,ZBTB3,SAP18,CD7,ENDOV,ELP6,ERMARD,MYL6,EPC1,EGFL7,ZNF22,HIRA,ATXN3,CHADL,ARGLU1,YJEFN3,SGSM2,VMAC,TAF10,KRI1,COX4I1,BCL2L12,NFKBIL1,DYRK4,CENPS,PELP1,MYL6B,C19orf25,ADAMTS13,NDUFA5,TRMT61A,COA5,ATP5F1D,NR2C1,SMIM19,FKBP2,MOK,SRRT,TAF6L,SYCE2,UBA52,TRIM66,MRPS26,MSL2,ITFG2,RRNAD1,ZSWIM7,RP11-523H20.5,RPS26,LRRC37A3,KIAA0895L,NDUFAF6,ATAD3B,ZNHIT2,BANF1,PHYKPL,TMEM9,RECQL5,PHKG2,NARF,POLR2J,ARHGAP9,POLR2I,CENPT,POGZ,NUDT2,LSM4,RBM4B,SNRPB,MRPS31,C21orf58,ADAT2,ATP5MJ,AAAS,SLC38A6,CAPN15,CXXC1,DDX17,HAUS5,HDAC7,CDAN1,POLL,CHCHD10,NDUFC1,CRYZL1,STAC3,GOLGA8B,SMG9,TIMM29,GOLGA8A,PAM16,TCIRG1,SETD4,PSMC5,SMIM4,ZNF84,GALK1,C19orf18,PCMTD1,LZTR1,USP20,MRPL54,GSDMB,TCEA2,KRT10,TMEM234,ATP5MG,SIRT3,CTU1,ACD,XAB2,CENPB,ZFP14,NPEPL1,TMC8,TUBGCP6,CCDC14,FAAP20,COA3,EIF2B5,NDUFA3,RABGGTB,SVBP,GKAP1,TAZ,C19orf44,PSMD13,ASIC3,RCCD1,OGT,RAB4B,TARBP2,DHX34,RING1,RBM15,CHKB,BBIP1,TRIM11,ABHD14B,OSGEP,CLK1,WASHC3,BABAM1,CARS2,ENO3,PIH1D1,NDUFA2,ORMDL1,FDX2,MCAT,DDX51,PSMB3,PASK,ZNF593,ATG4B,CCDC191,FAM229A,CCS,COX6C,CCDC159,NOP2,ABCA7,TMCO6,STK25,ACOT8,MBTD1,EEFSEC,ANAPC11,SCNN1D,TOR2A,RRP7A,CCDC12,ERCC5,THADA,DNAJC4,CCDC28B,PRR3,PPOX,MRPL20,TIMM44,ADPRM,CAPN10,TMEM175,MRPL24,GDPD3,C4orf48,SMPD2,TRIM13,FAM71E1,NME4,TBL3,CWC15,CPSF4,NAA10,FBXO44,TUSC2,PGP,LMF1,MRPS15,ENOSF1,THOC6,UBOX5,TNFRSF13C,COA1,FNBP4,DENND6B,ZFYVE19,IFI27L2,PTRH2,IL11RA,SGF29,NEK8,NAP1L1,MBD3,SERF2,RPS10,CLEC2D,VPS28,PSPN,MRPS9,RABEP2,NDUFAF5,AP4M1,FRG1,SYF2,NTHL1,UBE2L3,WDR27,HSPBP1,EME2,S100A13,DCAF15,PLXNB1,R3HDM4,NCAPH2,PNISR,GEN1,SFPQ,AMT,LRRC27,ACAP3,SPAG7,NOSIP,ZNF10,IDH3G,TAF11,NUDT1,TRMU,PSMA2,SEM1,TIGD5,C1orf35,TMEM150A,BUD23,ZCWPW1,MRPL2,KLHDC4,CCNL2,ANKRD10,TENT4A,VPS9D1,CHTOP,HHLA3,LSM5,DDTL,H2AJ,COPS9,OSBPL7,KAT2A,PLA2G6,TMEM86B,DPY30,FAM50A,ITPA,RAMP2,POLI,PAQR6,IRF7,PRPF39,ALKBH7,MIB2,HAUS7,CEP44,SCRN2,GMFG,ANKS3,SMDT1,TXNRD2,CRYGS,RPS6,FAM160A2,ZNF83,NSUN6,MCRIP2,FAM234A,SZT2,PSMB1,ERCC1,CPNE1,PROCA1,IGFLR1,BTBD2,MAP2K7,PPAN,CENPJ,C14orf93,DPH7,POU6F1,NSMCE4A,PNPLA7,HINFP,XPA,CD320,APBB3,WDR74,TRIT1,ME3,AGAP6,ADAMTS10,RBM39,NDUFA13,TMEM44,SNRPD2,TRIM39,EIF3F,NEK3,CSAD,BCL7C,OBSL1,TMEM259,FRA10AC1,CACTIN,PEDS1,LST1,OGA,PYCR2,NUP42,IFT27,PAN3,ZNHIT1,SARS2,ARHGAP4,SWSAP1,RAB13,CLN3,PA2G4,METTL25,MTG1,GTPBP3,NUDT14,YAF2,APOM,BIN1,ING4,MED15,RAD52,RRP8,REC8,CEP43,PGGHG,PEX16,FBXL6,USP21,RBM10,TRIM52,COA8,PCBP4,TTC13,RPS24,CNFN,TPRKB,TMEM80,NEDD8,GMEB2,NACA,YPEL3,SAP30BP,RNASEH2C,NSMCE1,SLC25A45,ATP5MC2,TUBD1,CARD16,REX1BD,HSD11B1L,FASTK,FXYD5,DXO,CCDC57,RABL2B,FAM174C,POLR1D,EPOR,C12orf57,DPM2,QPCTL,N4BP2L2,DCLRE1C,DPP7,GPCPD1,TRAPPC12,ULK3,IRAK4,KCTD13,CCNQ,CLK4,C6orf136,LCK,PRKD2,PPIH,SPRN,FAM104B,SIAH1,GTF2H5,AGPAT2,ILKAP,LYPLAL1,METTL17,TMEM39B,BBC3,SNHG32,CBY1,MAP4K1,SLC12A9,WDR83,USF1,RABL2A,SLC25A29,B3GALT6,CAMKMT,ATP5MK,NPIPA5,NOC4L,SPOUT1,SRSF2,CUL9,MTLN,FBXW4,TSEN54,LRRC37B,MRPL57,FADS3,LMNTD2,NUPR1,EBPL,FAM193B,SLC25A39,PNKP,SLC25A28,CZIB,VCPKMT,SPATC1L,MRPS25,POLM,DECR2,ZNF69,SDF2L1,TRIR,JMJD4,SCNM1,RTRAF,GLI4,NDUFB8,SSR4,NPRL3,AHI1,MIX23,PFDN2,FAM111A,RPL37A,ANKMY1,C8orf58,GNPTG,NUTF2,GPN2,INTS11,RASGRP2,DUS2,RC3H1,ZNF44,NAA38,BCLAF3,CCDC137,IFT80,DOHH,UBN2,ABTB1,ARMC12,C11orf98,TBCB,SYCE1L,TARS3,ZC3H8,TADA2A,PEX11G,LRRC56,TRADD,PTPN6,ZSWIM1,COMMD1,FIZ1,TATDN2,LTB4R,CD2BP2,PTOV1,NCKAP5L,C2orf68,RBM6,TRMT13,TMEM134,SREK1IP1,ORAI3,TMEM91,TNFRSF14,PSME3IP1,PPP1R14B,TCF25,UBXN11,SSBP3,CROCC,CERS5,RSAD1,RP9,JOSD2,MVD,FAM3A,SRSF7,PSME2,ATAT1,IFFO1,ATP5F1E,CTBP1,POMT1,CDPF1,FANCG,DPY19L2,UBE2J2,KATNBL1,TIMM13,MTIF3,C7orf26,NDUFA7,SLX4IP,CLK3,UQCRB,LRCH3,MSL3,MC1R,COQ4,PHLDB3,ECI1,ACBD4,LRRC23,TMEM223,MROH6,ENTR1,RHPN1,SLC25A10,PPIE,CLDN15,SETD6,ZNF34,GEMIN7,TMEM41B,MZT2B,CCNL1,PIGQ,ANKRD54,RASSF7,TMEM60,RBM45,YAE1,NR2C2AP,ALDH16A1,RETREG3,ARFRP1,CIAO2B,ABCD4,AAMDC,MRPL27,MEN1,ARPC4,POLE,DDX5,KPTN,CSKMT,LIPT1,SUV39H1,TPGS1,PNN,MICOS10,TRA2A,RNF126,SMARCD3,RPS13,APRT,CEP131,DUS1L,NEURL4,RUVBL2,NRIP2,CNTROB,NADSYN1,IMMP1L,CFAP44,HSD17B10,RPS17,TPRA1,CFDP1,ODF2L,RPS29,SLC26A6,PCSK1N,IRF3,IMP3,CHCHD5,C7orf50,NRF1,GADD45GIP1,SNF8,PIGL,DDX39A,DCAF8,STAG3L5P-PVRIG2P-PILRB,SLC25A1,ABCA5,LIN37,PPP1R16A,SS18L2,OSGEPL1,ZGLP1,SHC2,ANAPC7,C1orf50,DNAJB2,EXOG,ANAPC2,BEND5,UFD1,COX17,SAMD1,GAMT,EZH1,ELMOD3,GSTM2,NDUFB7,NSUN5,CLN6,THYN1,PGLS,RRAS,TELO2,ETFB,LRRC29,AUP1,C12orf76,FAM228B,CBLN3,TIGD1,RPL36A,THAP3,PCP2,CLASRP,CWC25,HMGN1,TTC32,ZMAT1,ZNF18,TMA7,ITGAE,CYP2R1,PPHLN1,YBEY,SOX12,CNOT2,RBM48,KLHDC3,AARSD1,RBM5,APOBEC3D,NKTR,TMEM11,PARP6,NDUFV3,CYHR1,SIRT6,TMEM54,HSPB11,USPL1,LIG1,NELFA,TRAPPC2,SNRPB2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CNOT1,PARP1,CMIP,DIABLO,FAM168B,GNA11,NEK4,COPB1,FAM53C,TRAP1,VPS26C,PSMD2,SLC36A1,RMDN3,ARID1A,GET3,VPS4B,UBAP1,MYH9,HACD3,RNF4,RNF123,PTPRK,FCF1,CHP1,BECN1,AREL1,PPID,RNF40,FAM104A,TNPO3,SEPTIN10,DAG1,PCDHGC3,RELL1,PSEN1,CHD8,EDC4,SBDS,LARP1,RRM1,CEP104,APLP2,TPM3,TSR1,GBA,TRIM37,CYB5R3,KAT5,ACTN1,KIAA0100,ITGB1,PLEKHB2,EIF4G1,RAB7A,TUBA1C,IARS1,BZW1,VPS26A,CANT1,DNAJC14,PSMC1,SRP72,CAP1,CLTC,ATRN,MSH2,GLG1,FLII,FBXO34,AAMP,L2HGDH,SDHC,ALG12,DHX8,CTNNB1,NBR1,LZIC,THTPA,MAZ,BCL2L13,SNX19,VPS35L,ATP6V0D1,PDPK1,HSPA8,FLNA,MCCC2,AP3D1,CDK4,TMEM127,TUBGCP4,SPRYD3,ERLIN2,GOLIM4,SLC7A6OS,HSPA4,SSR3,COPS4,NOMO2,UBE2D3,LRP10,RAB29,IQGAP1,LLGL1,ACOX1,TMCO3,SMARCA2,RNF31,FERMT2,RFFL,MORF4L1,CIPC,FBXL18,CLPB,BTBD10,API5,GANAB,ETFDH,IQGAP2,ARMCX3,PRMT5,CCNI,SNAP23,ATP5PB,CALM3,CLCC1,IPO5,TXNRD1,MPDZ,TBCCD1,BCL2L2,PSME3,ALAS1,IKBKG,SMAD1,UBN1,POLR2B,COPB2,ACACA,CNIH1,WIPF2,PRKAR2A,TM9SF1,SEC14L1,SEC22B,RAB5C,PRPS1,BRCC3,ZFAND3,ESYT1,MYOF,ARSB,ACVR1,ATP5F1A,COPG1,TPM4,C1orf109,HSPG2,EIF3C,ZFYVE1,TP53BP2,SLC35A5,KBTBD4,ZC3H15,APP,CHTF8,STT3A,LIG3,MAIP1,MSH6,PTPN9,ATP5F1B,ARF3,MBTPS1,NFKB1,SMG6,GPHN,NCOA4,SF3A1,ADNP2,TMED1,SNX1,TMLHE,DDB1,NUP98,ABHD5,UBAP2L,AZI2,TAF6,TIRAP,OAT,RPN2,PPARA,GFM2,WASHC5,OGFOD1,PDCD6IP,GALC,NPC1,MTHFD1,TFIP11,GGCX,MRPL49,NSF,FASTKD2,DHDDS,PAIP2,MED1,GOSR2,EIF3L,RAB3D,FLNB,PLS1,EIF4G2,HAUS4,CD46,CSNK1A1,LARS2,SLC30A5,CUL2,BACE1,CAB39,ATP1A1,PLIN3,ACADM,ACTN4,AKIRIN1,SEC31A,CTNNA1,ELF1,TBC1D9B,YME1L1,WDR44,ARL2BP,RTN4,CAST,TEX2,DDX1,SH3PXD2B,ITFG1,SRRD,BTD,PDCD10,USP14,AMBRA1,UBB,RUSF1,AIMP2,ECD,UBC,TMBIM6,UBFD1,HAUS2,KIAA1191,AFAP1,GLYR1,MCFD2,EMC1,SLC39A6,TAF5L,GSKIP | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000276148 | ENST00000612009 | exon_skip_66482 | chr11:126274926-126275021 | -11.93 | -0.1591 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_74009 | chr11:64773429-64773505 | -7.97 | -0.1374 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_319223 | chr19:43526200-43526349 | -11.86 | -0.1395 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_364260 | chr22:29291561-29291599 | -4.84 | -0.1512 | EWSR1 | ENST00000397938 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_377198 | chr3:123130479-123130616 | -9.94 | -0.1912 | PDIA5 | ENST00000316218 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_382458 | chr3:38131595-38131638 | -5.64 | -0.1611 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_466137 | chr7:48103296-48103411 | -5.73 | -0.1637 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_11029 | chr1:154989559-154989707 | -13.83 | -0.1017 | FLAD1 | ENST00000292180 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_95407 | chr12:95040475-95040597 | -9.58 | -0.1261 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_309204 | chr19:49181348-49181461 | -9.73 | -0.4230 | TRPM4 | ENST00000252826 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_370518 | chr22:50247691-50247776 | -8.83 | -0.1051 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_380242 | chr3:186784961-186785101 | -8.40 | -0.1750 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_384420 | chr3:49812647-49812738 | -8.84 | -0.1195 | UBA7 | ENST00000333486 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_9446 | chr1:147270931-147271005 | -9.29 | -0.1498 | CHD1L | ENST00000369258 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_79575 | chr12:6727925-6728001 | -6.35 | -0.1443 | COPS7A | ENST00000229251,ENST00000534877,ENST00000534947,ENST00000539735,ENST00000543155 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_92074 | chr12:50142052-50142110 | -5.84 | -0.1007 | CERS5 | ENST00000317551 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_108095 | chr14:73955450-73955509 | -7.24 | -0.2194 | COQ6 | ENST00000334571 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_111863 | chr14:23565815-23565892 | -9.26 | -0.1684 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_114365 | chr14:74290026-74290118 | -9.94 | -0.3976 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_127618 | chr15:58890280-58890461 | -7.94 | -0.1498 | SLTM | ENST00000380516 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_133217 | chr16:8635038-8635079 | -5.62 | -1.1240 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_290158 | chr17:42953723-42953778 | -4.30 | -0.2687 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_292904 | chr17:69251746-69251866 | -6.98 | -0.1790 | ABCA5 | ENST00000392676,ENST00000588877 | In-frame | | ENSG00000276148 | ENST00000612009 | exon_skip_324294 | chr2:27774423-27774530 | -9.43 | -0.1241 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_358821 | chr20:63943652-63943669 | -3.87 | -0.2580 | UCKL1 | ENST00000354216 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_374375 | chr3:49675182-49675309 | -10.81 | -0.1114 | APEH | ENST00000296456 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_433210 | chr4:177436275-177436351 | -6.71 | -0.1065 | AGA | ENST00000264595 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_436035 | chr5:79656957-79657001 | -4.49 | -0.2993 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_445390 | chr5:150403120-150403312 | -15.30 | -0.1224 | CD74 | ENST00000009530 | In-frame | | ENSG00000276148 | ENST00000612009 | exon_skip_476549 | chr7:76013741-76013887 | -9.28 | -0.1687 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_479346 | chr7:124829253-124829342 | -8.17 | -0.2553 | POT1 | ENST00000357628 | Frame-shift | | ENSG00000276148 | ENST00000612009 | exon_skip_476008 | chr7:65970281-65970366 | -8.21 | -0.1909 | GUSB | ENST00000304895 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000276148 | ENSG00000004777 | ARHGAP33 | ACC,CHOL,KIRC,KIRP,MESO,PAAD,PCPG,PRAD,THCA,THYM,UCS | KIRC | | | ENSG00000276148 | ENSG00000007392 | LUC7L | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SARC,STAD,TGCT,THCA,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000010295 | IFFO1 | ACC,CHOL,GBM,KIRC,KIRP,LGG,PAAD,PCPG,THYM | KIRC,KIRP | | | ENSG00000276148 | ENSG00000013441 | CLK1 | ACC,BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,OV,PAAD,PCPG,PRAD,SARC,STAD,TGCT,THCA,THYM,UCEC,UCS | KIRC | | | ENSG00000276148 | ENSG00000100288 | CHKB | ACC,BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SARC,STAD,TGCT,THCA,THYM,UCEC,UCS | KIRC | | | ENSG00000276148 | ENSG00000102898 | NUTF2 | ACC,CHOL,DLBC,KIRP,LGG,PCPG,PRAD,THCA,THYM,UCS | KIRP | | | ENSG00000276148 | ENSG00000108773 | KAT2A | ACC,BLCA,BRCA,CHOL,GBM,KIRC,KIRP,LGG,LUSC,MESO,PAAD,PCPG,PRAD,SARC,TGCT,THCA,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000124074 | ENKD1 | ACC,BLCA,BRCA,CESC,DLBC,GBM,KIRC,KIRP,LGG,PAAD,PCPG,PRAD,SARC,TGCT,THCA,THYM,UCEC,UCS | KIRP | | | ENSG00000276148 | ENSG00000127586 | CHTF18 | ACC,BLCA,CHOL,GBM,KIRC,KIRP,LGG,LUSC,MESO,PCPG,PRAD,THCA,THYM,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000132522 | GPS2 | ACC,BLCA,BRCA,CHOL,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000135723 | FHOD1 | ACC,CHOL,KIRC,PAAD,THCA | KIRC | | | ENSG00000276148 | ENSG00000139631 | CSAD | ACC,BLCA,BRCA,COAD,GBM,KIRC,KIRP,LGG,LUAD,LUSC,OV,PAAD,PCPG,PRAD,SARC,STAD,TGCT,THCA,UCEC,UCS | KIRC | | | ENSG00000276148 | ENSG00000142046 | TMEM91 | ACC,BRCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCEC | KIRC | | | ENSG00000276148 | ENSG00000158062 | UBXN11 | ACC,BLCA,BRCA,CESC,CHOL,DLBC,ESCA,KIRC,KIRP,LGG,LUSC,OV,PAAD,PCPG,PRAD,THCA,THYM,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000162650 | ATXN7L2 | ACC,CHOL,GBM,KIRC,KIRP,LGG,LUSC,PCPG,THCA,THYM,UCS | KIRP | | | ENSG00000276148 | ENSG00000167543 | TP53I13 | ACC,CESC,CHOL,DLBC,KIRC,KIRP,LGG,PAAD,PCPG,PRAD,SARC,THCA | KIRP | | | ENSG00000276148 | ENSG00000168096 | ANKS3 | ACC,BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,STAD,TGCT,THCA,UCEC,UCS | KIRP | | | ENSG00000276148 | ENSG00000175265 | GOLGA8A | ACC,BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,OV,PAAD,PCPG,PRAD,STAD,TGCT,THCA,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000175309 | PHYKPL | ACC,BLCA,BRCA,CHOL,COAD,GBM,KIRC,KIRP,LGG,PAAD,STAD,THCA,THYM,UCEC | KIRC | | | ENSG00000276148 | ENSG00000175455 | CCDC14 | ACC,BLCA,BRCA,COAD,GBM,KIRC,KIRP,LUAD,LUSC,OV,PAAD,PCPG,STAD,TGCT,THCA,UCEC | KIRC,KIRP | | | ENSG00000276148 | ENSG00000184465 | WDR27 | ACC,BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,TGCT,THCA,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000185482 | STAC3 | ACC,BLCA,CHOL,KIRC,KIRP,LGG,PCPG,THYM,UCEC | KIRC,KIRP | | | ENSG00000276148 | ENSG00000186166 | CENATAC | ACC,BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SARC,STAD,TGCT,THCA,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000196123 | KIAA0895L | ACC,BLCA,ESCA,GBM,KIRC,KIRP,LUAD,LUSC,PAAD,PCPG,PRAD,THCA,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000204149 | AGAP6 | ACC,BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,TGCT,THCA,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000204305 | AGER | ACC,BLCA,BRCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,OV,PAAD,SARC,STAD,TGCT,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000204681 | GABBR1 | ACC,BRCA,COAD,KIRC,KIRP,PAAD,THCA | KIRC,KIRP | | | ENSG00000276148 | ENSG00000213398 | LCAT | ACC,BRCA,DLBC,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SARC,STAD,TGCT,THCA,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000214021 | TTLL3 | ACC,BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,STAD,THCA,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000215252 | GOLGA8B | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,OV,PAAD,PCPG,PRAD,STAD,TGCT,THCA,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000215440 | NPEPL1 | ACC,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUSC,MESO,PAAD,PCPG,PRAD,SARC,THCA,THYM,UCEC,UCS | KIRC | | | ENSG00000276148 | ENSG00000221978 | CCNL2 | ACC,BLCA,BRCA,CHOL,COAD,GBM,KIRC,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,STAD,TGCT,THCA,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000240038 | AMY2B | ACC,GBM,KIRC,KIRP,LGG,LUAD,THCA | KIRC,KIRP | | | ENSG00000276148 | ENSG00000250067 | YJEFN3 | ACC,BLCA,DLBC,ESCA,GBM,KIRC,KIRP,LGG,PAAD,PCPG,PRAD,TGCT,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000258839 | MC1R | ACC,BLCA,KIRP,LGG,LUSC,PAAD,PCPG,THCA | KIRP | | | ENSG00000276148 | ENSG00000005075 | POLR2J | BLCA,BRCA,CESC,CHOL,DLBC,KIRP,LGG,TGCT,THCA,THYM | KIRP | | | ENSG00000276148 | ENSG00000006025 | OSBPL7 | BLCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUSC,THCA | KIRP | | | ENSG00000276148 | ENSG00000044446 | PHKA2 | BLCA,GBM,KIRC,LUAD,PAAD | KIRC | | | ENSG00000276148 | ENSG00000061938 | TNK2 | BLCA,BRCA,CHOL,KIRC,PCPG,PRAD,THCA | KIRC | | | ENSG00000276148 | ENSG00000065357 | DGKA | BLCA,CHOL,KIRC,KIRP,PAAD,THYM | KIRC,KIRP | | | ENSG00000276148 | ENSG00000069493 | CLEC2D | BLCA,BRCA,CESC,CHOL,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,PAAD,TGCT,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000073605 | GSDMB | BLCA,CHOL,GBM,KIRC,KIRP,LGG,LUSC,TGCT,THCA,THYM,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000100429 | HDAC10 | BLCA,BRCA,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LGG,LUSC,MESO,PAAD,PCPG,PRAD,SARC,TGCT,THCA,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000102125 | TAZ | BLCA,BRCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUSC,PAAD,PCPG,PRAD,THCA,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000104859 | CLASRP | BLCA,BRCA,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LGG,LUSC,MESO,PAAD,PCPG,PRAD,SARC,TGCT,THCA,THYM,UCEC | KIRC | | | ENSG00000276148 | ENSG00000107281 | NPDC1 | BLCA,KIRC,LGG,PAAD,SARC,THCA,UCEC,UCS | KIRC | | | ENSG00000276148 | ENSG00000113108 | APBB3 | BLCA,BRCA,CHOL,ESCA,GBM,KIRC,KIRP,LGG,PAAD,STAD,THCA,UCEC | KIRC | | | ENSG00000276148 | ENSG00000113240 | CLK4 | BLCA,BRCA,CHOL,COAD,GBM,KIRC,KIRP,LGG,PAAD,STAD,THCA,UCEC | KIRC | | | ENSG00000276148 | ENSG00000127415 | IDUA | BLCA,BRCA,CESC,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUSC,MESO,PAAD,PCPG,PRAD,THCA,THYM,UCEC | KIRC,KIRP | | | ENSG00000276148 | ENSG00000127922 | SEM1 | BLCA,CESC,DLBC,KIRC,KIRP,LGG,THCA,THYM | KIRP | | | ENSG00000276148 | ENSG00000130731 | METTL26 | BLCA,BRCA,CESC,CHOL,DLBC,KIRC,KIRP,LGG,MESO,PAAD,PCPG,PRAD,SARC,TGCT,THCA,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000135722 | FBXL8 | BLCA,BRCA,KIRC,KIRP,LUSC,PCPG,PRAD,THCA | KIRC,KIRP | | | ENSG00000276148 | ENSG00000138834 | MAPK8IP3 | BLCA,BRCA,CHOL,ESCA,KIRC,KIRP,LUSC,PAAD,PRAD,STAD,THCA,UCEC | KIRC,KIRP | | | ENSG00000276148 | ENSG00000139597 | N4BP2L1 | BLCA,BRCA,COAD,ESCA,KIRC,KIRP,LUAD,PAAD,THCA,UCS | KIRC | | | ENSG00000276148 | ENSG00000139636 | LMBR1L | BLCA,BRCA,CHOL,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SARC,THCA,THYM,UCEC,UCS | KIRC | | | ENSG00000276148 | ENSG00000157873 | TNFRSF14 | BLCA,BRCA,CESC,CHOL,KIRC,KIRP,LUSC,PAAD,PRAD,THCA,THYM,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000158106 | RHPN1 | BLCA,CESC,GBM,KIRC,KIRP,LGG,PAAD,SARC,THCA,THYM | KIRP | | | ENSG00000276148 | ENSG00000160072 | ATAD3B | BLCA,BRCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,MESO,PAAD,PCPG,PRAD,THCA,THYM,UCEC | KIRC | | | ENSG00000276148 | ENSG00000167604 | NFKBID | BLCA,BRCA,CHOL,GBM,KIRC,KIRP,LUSC,PAAD,THCA,THYM | KIRC,KIRP | | | ENSG00000276148 | ENSG00000172890 | NADSYN1 | BLCA,CHOL,KIRC,KIRP,LGG,PAAD,SARC,THCA,THYM | KIRC | | | ENSG00000276148 | ENSG00000180089 | TMEM86B | BLCA,CESC,DLBC,KIRP,MESO,PAAD,PCPG,TGCT,THCA,THYM,UCEC,UCS | KIRP | | | ENSG00000276148 | ENSG00000182685 | BRICD5 | BLCA,BRCA,CESC,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,SARC,THCA,THYM,UCEC,UCS | KIRC | | | ENSG00000276148 | ENSG00000185522 | LMNTD2 | BLCA,BRCA,DLBC,KIRC,KIRP,PAAD,THCA | KIRC,KIRP | | | ENSG00000276148 | ENSG00000197774 | EME2 | BLCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,THCA,UCEC | KIRC,KIRP | | | ENSG00000276148 | ENSG00000197948 | FCHSD1 | BLCA,BRCA,CHOL,GBM,KIRC,KIRP,PAAD,THCA,THYM | KIRC,KIRP | | | ENSG00000276148 | ENSG00000213139 | CRYGS | BLCA,CHOL,DLBC,KIRP,LGG,PAAD,TGCT,UCEC | KIRP | | | ENSG00000276148 | ENSG00000213397 | HAUS7 | BLCA,CESC,DLBC,GBM,KIRP,TGCT,UCEC | KIRP | | | ENSG00000276148 | ENSG00000215375 | MYL5 | BLCA,BRCA,CHOL,DLBC,KIRC,KIRP,LGG,LUAD,MESO,PCPG,PRAD,SARC,THCA,UCEC | KIRC,KIRP | | | ENSG00000276148 | ENSG00000217930 | PAM16 | BLCA,BRCA,CHOL,KIRC,KIRP,LGG,LUSC,MESO,PAAD,PCPG,PRAD,SARC,THCA,THYM,UCS | KIRC | | | ENSG00000276148 | ENSG00000241343 | RPL36A | BLCA,BRCA,CESC,CHOL,DLBC,ESCA,KIRC,KIRP,LGG,PCPG,PRAD,SARC,STAD,TGCT,THCA,THYM,UCEC | KIRC,KIRP | | | ENSG00000276148 | ENSG00000256525 | POLG2 | BLCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PRAD,STAD,THCA,THYM,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000273899 | NOL12 | BLCA,BRCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUSC,PAAD,PCPG,PRAD,SARC,THCA,THYM,UCEC,UCS | KIRC | | | ENSG00000276148 | ENSG00000115257 | PCSK4 | BRCA,KIRC,KIRP,LGG,PCPG,THCA,THYM | KIRP | | | ENSG00000276148 | ENSG00000129946 | SHC2 | BRCA,GBM,KIRC,KIRP,LGG,MESO,PAAD,PCPG,PRAD,THCA | KIRC,KIRP | | | ENSG00000276148 | ENSG00000130653 | PNPLA7 | BRCA,DLBC,GBM,KIRC,KIRP,LGG,PAAD,THCA | KIRC | | | ENSG00000276148 | ENSG00000162572 | SCNN1D | BRCA,CHOL,GBM,KIRC,KIRP,LGG,PAAD,PCPG,PRAD,TGCT,THYM | KIRC,KIRP | | | ENSG00000276148 | ENSG00000164877 | MICALL2 | BRCA,KIRC,KIRP,PAAD,THCA,UCEC | KIRC,KIRP | | | ENSG00000276148 | ENSG00000166012 | TAF1D | BRCA,COAD,GBM,KIRC,KIRP,LGG,LUAD,PRAD,STAD,THCA,THYM,UCEC | KIRC,KIRP | | | ENSG00000276148 | ENSG00000177595 | PIDD1 | BRCA,CESC,CHOL,DLBC,GBM,KIRC,KIRP,LGG,PAAD,THCA,THYM | KIRC,KIRP | | | ENSG00000276148 | ENSG00000177989 | ODF3B | BRCA,KIRC,KIRP,LUSC,PAAD,PCPG,PRAD,THCA | KIRC,KIRP | | | ENSG00000276148 | ENSG00000213066 | CEP43 | BRCA,CESC,COAD,ESCA,KIRC,KIRP,LAML,THCA,THYM,UCEC | KIRC | | | ENSG00000276148 | ENSG00000213903 | LTB4R | BRCA,CHOL,KIRC,KIRP,LGG,PAAD,PRAD,TGCT,THCA,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000010626 | LRRC23 | CESC,DLBC,KIRP,LAML,LGG,PAAD,PRAD,SARC,THCA,UCS | KIRP | | | ENSG00000276148 | ENSG00000023902 | PLEKHO1 | CESC,CHOL,KIRC,KIRP,LGG,PAAD,PRAD,TGCT,THCA,THYM | KIRC | | | ENSG00000276148 | ENSG00000071859 | FAM50A | CESC,CHOL,DLBC,KIRC,KIRP,LGG,PCPG,PRAD,THCA | KIRP | | | ENSG00000276148 | ENSG00000090971 | NAT14 | CESC,DLBC,KIRP,LGG,PCPG,PRAD,SARC,THCA,THYM | KIRP | | | ENSG00000276148 | ENSG00000111679 | PTPN6 | CESC,CHOL,ESCA,KIRP,LUSC,PAAD,THCA,THYM,UCS | KIRP | | | ENSG00000276148 | ENSG00000126246 | IGFLR1 | CESC,CHOL,KIRC,KIRP,LGG,LUSC,THYM,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000142102 | PGGHG | CESC,CHOL,GBM,KIRC,KIRP,LGG,SARC,TGCT,THCA,THYM,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000167930 | FAM234A | CESC,DLBC,KIRP,LGG,MESO,PCPG,PRAD,THCA,UCS | KIRP | | | ENSG00000276148 | ENSG00000204482 | LST1 | CESC,CHOL,KIRP,TGCT,THYM | KIRP | | | ENSG00000276148 | ENSG00000272752 | STAG3L5P-PVRIG2P-PILRB | CESC,CHOL,KIRP,TGCT,THYM,UCEC | KIRP | | | ENSG00000276148 | ENSG00000002822 | MAD1L1 | CHOL,DLBC,KIRP,LGG,THCA,THYM | KIRP | | | ENSG00000276148 | ENSG00000072609 | CHFR | CHOL,GBM,KIRC,KIRP,LGG,LUAD,PAAD,PCPG,THCA,THYM | KIRC,KIRP | | | ENSG00000276148 | ENSG00000076928 | ARHGEF1 | CHOL,GBM,KIRC,KIRP,LGG,LUSC,PAAD,PCPG,PRAD,THCA,THYM | KIRC | | | ENSG00000276148 | ENSG00000089820 | ARHGAP4 | CHOL,DLBC,KIRC,KIRP,LGG,LUSC,PAAD,PRAD,THYM | KIRC | | | ENSG00000276148 | ENSG00000091592 | NLRP1 | CHOL,KIRC,KIRP,PAAD,THCA,THYM | KIRC | | | ENSG00000276148 | ENSG00000102871 | TRADD | CHOL,KIRP,LGG,PRAD,THCA | KIRP | | | ENSG00000276148 | ENSG00000103326 | CAPN15 | CHOL,GBM,KIRC,KIRP,MESO,PCPG,THCA | KIRC | | | ENSG00000276148 | ENSG00000104814 | MAP4K1 | CHOL,DLBC,KIRC,LGG,LUSC,PAAD,THYM | KIRC | | | ENSG00000276148 | ENSG00000105122 | RASAL3 | CHOL,KIRC,LUSC,PAAD,THYM | KIRC | | | ENSG00000276148 | ENSG00000105486 | LIG1 | CHOL,GBM,KIRC,KIRP,PAAD,THCA | KIRC,KIRP | | | ENSG00000276148 | ENSG00000105639 | JAK3 | CHOL,KIRC,KIRP,PAAD,THYM | KIRC,KIRP | | | ENSG00000276148 | ENSG00000106268 | NUDT1 | CHOL,DLBC,KIRP,LGG,THCA,THYM | KIRP | | | ENSG00000276148 | ENSG00000119632 | IFI27L2 | CHOL,DLBC,KIRP,LGG,PCPG,PRAD,THCA | KIRP | | | ENSG00000276148 | ENSG00000123136 | DDX39A | CHOL,DLBC,KIRC,KIRP,LGG,PAAD,PCPG,PRAD,THCA,THYM | KIRC | | | ENSG00000276148 | ENSG00000123329 | ARHGAP9 | CHOL,KIRC,LUSC,PAAD,THYM | KIRC | | | ENSG00000276148 | ENSG00000130305 | NSUN5 | CHOL,KIRP,THCA,THYM,UCS | KIRP | | | ENSG00000276148 | ENSG00000130313 | PGLS | CHOL,DLBC,KIRP,LGG,PAAD,PCPG,PRAD,THCA,THYM | KIRP | | | ENSG00000276148 | ENSG00000136717 | BIN1 | CHOL,DLBC,KIRP,MESO,PAAD | KIRP | | | ENSG00000276148 | ENSG00000138964 | PARVG | CHOL,DLBC,KIRC,PAAD,THYM | KIRC | | | ENSG00000276148 | ENSG00000142669 | SH3BGRL3 | CHOL,KIRP,PCPG,TGCT,THCA,THYM | KIRP | | | ENSG00000276148 | ENSG00000147437 | GNRH1 | CHOL,KIRC,KIRP,PAAD,THYM | KIRC,KIRP | | | ENSG00000276148 | ENSG00000158717 | RNF166 | CHOL,KIRC,KIRP,LGG,LUSC,PAAD,PCPG,PRAD,THCA,THYM | KIRC | | | ENSG00000276148 | ENSG00000167895 | TMC8 | CHOL,KIRC,LUSC,PAAD,THYM,UCS | KIRC | | | ENSG00000276148 | ENSG00000174943 | KCTD13 | CHOL,ESCA,KIRC,KIRP,MESO,PAAD,PCPG,TGCT,THCA | KIRC,KIRP | | | ENSG00000276148 | ENSG00000175463 | TBC1D10C | CHOL,DLBC,KIRC,PAAD,THYM,UCS | KIRC | | | ENSG00000276148 | ENSG00000180096 | SEPTIN1 | CHOL,DLBC,ESCA,KIRC,LUSC,PAAD,PCPG,PRAD,THYM,UCS | KIRC | | | ENSG00000276148 | ENSG00000184162 | NR2C2AP | CHOL,KIRC,KIRP,LGG,PCPG,PRAD,THCA | KIRP | | | ENSG00000276148 | ENSG00000185101 | ANO9 | CHOL,DLBC,KIRC,KIRP,PAAD,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000185158 | LRRC37B | CHOL,ESCA,GBM,KIRC,KIRP,LUAD,PAAD | KIRC,KIRP | | | ENSG00000276148 | ENSG00000185347 | TEDC1 | CHOL,KIRP,LGG,PCPG,PRAD,THCA,THYM | KIRP | | | ENSG00000276148 | ENSG00000186395 | KRT10 | CHOL,DLBC,KIRP,LGG,PCPG,PRAD,THCA | KIRP | | | ENSG00000276148 | ENSG00000186827 | TNFRSF4 | CHOL,KIRC,PAAD,PRAD,THCA | KIRC | | | ENSG00000276148 | ENSG00000187961 | KLHL17 | CHOL,GBM,KIRC,KIRP,LGG,LUSC,PAAD,PCPG,PRAD,THCA,THYM,UCEC | KIRC | | | ENSG00000276148 | ENSG00000204397 | CARD16 | CHOL,DLBC,KIRP,PAAD,PRAD,TGCT,THCA,THYM | KIRP | | | ENSG00000276148 | ENSG00000205268 | PDE7A | CHOL,COAD,KIRC,PAAD,STAD,THYM | KIRC | | | ENSG00000276148 | ENSG00000243811 | APOBEC3D | CHOL,DLBC,KIRC,KIRP,PAAD,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000267796 | LIN37 | CHOL,KIRC,KIRP,LGG,PAAD,PCPG,PRAD,THCA,THYM | KIRC | | | ENSG00000276148 | ENSG00000277791 | PSMB3 | CHOL,DLBC,KIRP,LGG,PCPG,PRAD,THCA,THYM | KIRP | | | ENSG00000276148 | ENSG00000134897 | BIVM | COAD,KIRP,LUAD,PCPG,THYM | KIRP | | | ENSG00000276148 | ENSG00000138036 | DYNC2LI1 | COAD,ESCA,KIRP,LAML,LGG,LUAD,STAD | KIRP | | | ENSG00000276148 | ENSG00000109736 | MFSD10 | DLBC,GBM,KIRC,KIRP,LGG,MESO,PCPG,PRAD,SARC,THCA,UCS | KIRP | | | ENSG00000276148 | ENSG00000121900 | TMEM54 | DLBC,KIRP,LGG,PCPG,PRAD | KIRP | | | ENSG00000276148 | ENSG00000160781 | PAQR6 | DLBC,KIRC,KIRP,MESO,OV,PRAD,THCA,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000165948 | IFI27L1 | DLBC,KIRP,LGG,PCPG,PRAD,THCA,THYM | KIRP | | | ENSG00000276148 | ENSG00000167525 | PROCA1 | DLBC,GBM,KIRP,LGG,THYM,UCS | KIRP | | | ENSG00000276148 | ENSG00000173457 | PPP1R14B | DLBC,KIRP,LGG,THCA,THYM | KIRP | | | ENSG00000276148 | ENSG00000175938 | ORAI3 | DLBC,KIRP,LGG,MESO,PCPG,PRAD,SARC,TGCT,THCA,UCS | KIRP | | | ENSG00000276148 | ENSG00000178026 | LRRC75B | DLBC,GBM,KIRC,KIRP,LGG,PCPG,PRAD,SARC,THCA,UCEC,UCS | KIRC,KIRP | | | ENSG00000276148 | ENSG00000205078 | SYCE1L | DLBC,KIRC,KIRP,MESO,PCPG,PRAD,THCA,THYM | KIRC,KIRP | | | ENSG00000276148 | ENSG00000243449 | C4orf48 | DLBC,KIRP,LGG,MESO,PCPG,PRAD,THCA | KIRP | | | ENSG00000276148 | ENSG00000167984 | NLRC3 | ESCA,KIRC,LUAD,LUSC,PAAD,THYM | KIRC | | | ENSG00000276148 | ENSG00000142303 | ADAMTS10 | GBM,KIRC,KIRP,LGG,THCA | KIRC,KIRP | | | ENSG00000276148 | ENSG00000182325 | FBXL6 | GBM,KIRC,KIRP,LGG,TGCT,THCA,THYM | KIRC | | | ENSG00000276148 | ENSG00000105327 | BBC3 | KIRC,KIRP,PCPG,PRAD,THYM | KIRC,KIRP | | | ENSG00000276148 | ENSG00000145014 | TMEM44 | KIRC,KIRP,PCPG,PRAD,TGCT,THCA,THYM | KIRC,KIRP | | | ENSG00000276148 | ENSG00000172889 | EGFL7 | KIRC,PAAD,SARC,THCA,UCS | KIRC | | | ENSG00000276148 | ENSG00000185386 | MAPK11 | KIRC,PAAD,PCPG,PRAD,SARC,THCA | KIRC | | | ENSG00000276148 | ENSG00000204839 | MROH6 | KIRC,KIRP,SARC,TGCT,UCS | KIRP | | | ENSG00000276148 | ENSG00000082014 | SMARCD3 | KIRP,LGG,PAAD,SARC,THCA | KIRP | | | ENSG00000276148 | ENSG00000160323 | ADAMTS13 | KIRP,LGG,PAAD,SARC,UCS | KIRP | | | ENSG00000276148 | ENSG00000246705 | H2AJ | KIRP,PAAD,SARC,THCA,THYM | KIRP | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000276148 | ENST00000612009 | HACD3 | ENSG00000074696 | ENST00000565299 | -0.1009 | 1 | - | KIRC,KIRP | | ENSG00000276148 | ENST00000612009 | ACADM | ENSG00000117054 | ENST00000420607 | -0.2491 | 340 | - | KIRC,KIRP | | ENSG00000276148 | ENST00000612009 | IQGAP2 | ENSG00000145703 | ENST00000396234 | -0.2224 | 1 | - | KIRC,KIRP | | ENSG00000276148 | ENST00000612009 | L2HGDH | ENSG00000087299 | ENST00000261699 | -0.1759 | 282 | - | KIRC,KIRP | | ENSG00000276148 | ENST00000612009 | L2HGDH | ENSG00000087299 | ENST00000421284 | -0.1118 | 1 | - | KIRC,KIRP | | ENSG00000276148 | ENST00000612009 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.1923 | 6 | - | KIRC,KIRP | | ENSG00000276148 | ENST00000612009 | SMARCA2 | ENSG00000080503 | ENST00000382186 | -2.2800 | 307 | - | KIRP | | ENSG00000276148 | ENST00000612009 | KIAA1191 | ENSG00000122203 | ENST00000510164 | -0.1313 | 222 | - | KIRP | | ENSG00000276148 | ENST00000612009 | KIAA1191 | ENSG00000122203 | ENST00000533553 | -0.2298 | 227 | - | KIRP | | ENSG00000276148 | ENST00000612009 | DAG1 | ENSG00000173402 | ENST00000435508 | -0.1614 | 199 | - | KIRC | | ENSG00000276148 | ENST00000612009 | OAT | ENSG00000065154 | ENST00000539214 | -0.1957 | 1 | - | KIRC,KIRP | | ENSG00000276148 | ENST00000612009 | OAT | ENSG00000065154 | ENST00000368845 | -0.1957 | 1 | - | KIRC,KIRP | | ENSG00000276148 | ENST00000612009 | ATP5F1A | ENSG00000152234 | ENST00000592364 | -0.1019 | 1 | - | KIRC | | ENSG00000276148 | ENST00000612009 | AKIRIN1 | ENSG00000174574 | ENST00000446189 | -0.1056 | 260 | - | KIRC,KIRP | | ENSG00000276148 | ENST00000612009 | AKIRIN1 | ENSG00000174574 | ENST00000372984 | -0.1056 | 260 | - | KIRC,KIRP | | ENSG00000276148 | ENST00000612009 | AKIRIN1 | ENSG00000174574 | ENST00000531822 | -0.1056 | 260 | - | KIRC,KIRP | | ENSG00000276148 | ENST00000612009 | CIPC | ENSG00000198894 | ENST00000555437 | -0.2792 | 1 | - | KIRP |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000276148.1 | ENST00000612009.1 | 92 | 1421 | 1699 |
|
