 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | TBC1D14,CNOT1,FAM168B,SCAPER,TSTD2,ARID1A,VPS4B,SUSD6,RNF123,HERC2,KDM3B,AIDA,NT5C2,BECN1,HIPK1,SMCR8,SNX6,UBR1,TRAPPC10,NOP9,CHD8,MYO5A,EDC4,EAF1,LRBA,MEF2D,KIAA1109,KIAA0100,MEGF9,EIF4G1,POLR2A,ANKFY1,DNAJC14,HMGN4,DNAJC11,SEC24B,ITPRIPL2,CTNND1,FLII,PRDM4,KCTD10,MACF1,SH3GLB1,BCL2L13,MARF1,MFN2,M6PR,RAPGEF2,AP3D1,ARHGEF17,ILK,RNF111,PCNX1,SGMS1,UBR4,LRP10,IQGAP1,DYNC1I2,GIGYF2,VPS13D,RNF31,SART3,PIAS1,FBXW11,GIT2,PRMT5,STK24,CCNI,UBE3B,UBE3C,RC3H2,LUZP1,AFF4,ASXL2,INO80,MFSD14A,G3BP2,KLF13,POLR2B,ZFP91,CLPX,BAZ2A,LPCAT3,NIPA2,ASH1L,NDST1,KBTBD4,RAB18,MIDEAS,EIF3A,GAPVD1,SSH1,MAP4,SMG6,BICD2,EPG5,KIAA0232,SIK3,BCL9L,NUP98,IGF2R,FBXW2,TRIP12,GPATCH8,ATP9B,PSMD5,ECPAS,TBC1D9,NFAT5,KIF2A,GTF2I,EIF3L,HBP1,EIF4G2,CSNK1A1,BACE1,HUWE1,SETD7,AKAP13,PPM1A,ELF1,YME1L1,CYFIP1,WDR44,TAF2,FEM1B,HAUS2,NEMF,CTDSP2,LATS1,AHNAK,RANBP9,DHX36,GLYR1,RAPGEF1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000276026 | ENST00000620712 | exon_skip_445390 | chr5:150403120-150403312 | -16.08 | -0.1124 | CD74 | ENST00000009530 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000276026 | ENST00000620712 | TBC1D9 | ENSG00000109436 | ENST00000442267 | -0.1133 | 1 | - | GBM,KIRP | | ENSG00000276026 | ENST00000620712 | UBR4 | ENSG00000127481 | ENST00000375254 | -0.1314 | 1 | - | GBM | | ENSG00000276026 | ENST00000620712 | UBR4 | ENSG00000127481 | ENST00000375225 | -0.1314 | 1 | - | GBM | | ENSG00000276026 | ENST00000620712 | UBR4 | ENSG00000127481 | ENST00000375224 | -0.1314 | 1 | - | GBM | | ENSG00000276026 | ENST00000620712 | UBR4 | ENSG00000127481 | ENST00000375218 | -0.1105 | 1 | - | GBM | | ENSG00000276026 | ENST00000620712 | HERC2 | ENSG00000128731 | ENST00000564734 | -0.1202 | 1 | - | GBM | | ENSG00000276026 | ENST00000620712 | FAM168B | ENSG00000152102 | ENST00000409185 | -0.1268 | 1 | - | GBM,BLCA | | ENSG00000276026 | ENST00000620712 | FAM168B | ENSG00000152102 | ENST00000389915 | -0.1295 | 8 | - | GBM,BLCA | | ENSG00000276026 | ENST00000620712 | TRAPPC10 | ENSG00000160218 | ENST00000380221 | -0.1085 | 1 | - | GBM | | ENSG00000276026 | ENST00000620712 | TRAPPC10 | ENSG00000160218 | ENST00000291574 | -0.1046 | 1 | - | GBM | | ENSG00000276026 | ENST00000620712 | TRAPPC10 | ENSG00000160218 | ENST00000422875 | -0.1108 | 1 | - | GBM | | ENSG00000276026 | ENST00000620712 | MARF1 | ENSG00000166783 | ENST00000551878 | -0.1430 | 1 | - | GBM | | ENSG00000276026 | ENST00000620712 | ECPAS | ENSG00000136813 | ENST00000374383 | -0.1572 | 75 | - | GBM | | ENSG00000276026 | ENST00000620712 | LUZP1 | ENSG00000169641 | ENST00000314174 | -0.1107 | 1 | - | GBM | | ENSG00000276026 | ENST00000620712 | AKAP13 | ENSG00000170776 | ENST00000394518 | -0.1090 | 1 | - | BLCA,UCEC,LUSC | | ENSG00000276026 | ENST00000620712 | AKAP13 | ENSG00000170776 | ENST00000394510 | -0.1090 | 1 | - | BLCA,UCEC,LUSC | | ENSG00000276026 | ENST00000620712 | SMG6 | ENSG00000070366 | ENST00000536871 | -0.1192 | 1 | - | UCEC | | ENSG00000276026 | ENST00000620712 | RAPGEF2 | ENSG00000109756 | ENST00000264431 | -0.1129 | 1 | - | GBM,LUSC | | ENSG00000276026 | ENST00000620712 | ARHGEF17 | ENSG00000110237 | ENST00000263674 | -0.1341 | 1 | - | GBM,BLCA,KIRP,UCEC,LUSC | | ENSG00000276026 | ENST00000620712 | KIAA1109 | ENSG00000138688 | ENST00000419325 | -0.4583 | 68 | - | GBM,LUSC | | ENSG00000276026 | ENST00000620712 | KIAA1109 | ENSG00000138688 | ENST00000442707 | -0.2373 | 62 | - | GBM,LUSC |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000276026.1 | ENST00000620712.1 | 77 | 317 | 550 |
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