 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | FRG1,ATP5PF,AP2S1,MRPL51,NDUFB3,SDHD,MDH1,ATP6V1D,EMC3,ATP5PO,DNAJC8,UBE2F,GET3 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000275888 | ENST00000620937 | exon_skip_41813 | chr10:68337857-68337996 | -16.62 | -0.1826 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_139933 | chr16:90035632-90035687 | -9.53 | -0.2508 | GAS8 | ENST00000268699 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_309204 | chr19:49181348-49181461 | -18.68 | -0.1730 | TRPM4 | ENST00000252826 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_374552 | chr3:50104247-50104308 | -10.95 | -0.1856 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_382458 | chr3:38131595-38131638 | -9.39 | -0.3238 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_387016 | chr3:121788283-121788432 | -17.56 | -0.1291 | IQCB1 | ENST00000310864 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_442657 | chr5:74730259-74730398 | -17.03 | -0.1225 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_38175 | chr1:234398381-234398553 | -15.51 | -0.1166 | TARBP1 | ENST00000040877 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_66482 | chr11:126274926-126275021 | -12.58 | -0.2374 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_103007 | chr13:37025319-37025437 | -17.21 | -0.1687 | SUPT20H | ENST00000350612 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_127618 | chr15:58890280-58890461 | -19.28 | -0.1114 | SLTM | ENST00000380516 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_133217 | chr16:8635038-8635079 | -11.41 | -0.3803 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_290158 | chr17:42953723-42953778 | -7.44 | -0.1459 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_302168 | chr19:10680345-10680443 | -13.89 | -0.1478 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_332658 | chr2:203272669-203272748 | -9.35 | -0.1336 | CYP20A1 | ENST00000356079 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_358821 | chr20:63943652-63943669 | -6.81 | -0.4540 | UCKL1 | ENST00000354216 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_365497 | chr22:38067703-38067770 | -14.17 | -0.2952 | PICK1 | ENST00000356976,ENST00000404072 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_370518 | chr22:50247691-50247776 | -17.43 | -0.3005 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_470226 | chr7:103307595-103307708 | -11.84 | -0.1057 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000275888 | ENST00000620937 | exon_skip_340759 | chr2:85552415-85552567 | -17.93 | -0.1281 | GGCX | ENST00000233838 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000275888 | ENST00000620937 | ATP5PF | ENSG00000154723 | ENST00000400099 | -0.1524 | 539 | - | READ | | ENSG00000275888 | ENST00000620937 | SDHD | ENSG00000204370 | ENST00000534010 | -0.1058 | 199 | - | READ |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000275888.1 | ENST00000620937.1 | 162 | 2207 | 1719 |
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