 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RPAP2,CCDC65,VAMP1,ATL2,MFSD8,DNAJC27,CIRBP,MZF1,TTC31,MAPK8IP3,SRP19,VAMP4,RHNO1,PPP2R3B,SLF2,GNAQ,TMEM184C,RNF170,SENP1,RNF6,SLC19A2,TULP3,WDR5B,ST7L,MSANTD2,FAM200A,CHKA,COG6,FAM133B,IBTK,TBK1,TTC14,SH3GLB1,PPIP5K2,ECHDC2,SCML1,C20orf194,CBX3,COX19,NCBP1,PPIL4,MPLKIP,PSIP1,RIC8B,UBE3A,THOC2,ACAD10,ZBTB6,OTULIN,OFD1,TMEM243,CFAP298,XPNPEP3,MIS12,ZNHIT6,NEMP1,EML4,MIS18BP1,MDN1,ANAPC5,C18orf21,RAB5A,C12orf73,DONSON,SECISBP2L,ORC2,SSBP2,NFKBIZ,PHC3,BTF3L4,DHX35,INTS2,SUPT20H,DCUN1D2,EIF2B1,ERGIC2,SMARCAD1,GIGYF1,HMGN3,ZNF14,CDK17,ATG2B,CIR1,ARHGAP33,HEXD,AP4E1,DDX42,DENR,EIF4A1,CSNK2A2,LYSMD1,FAM204A,CCDC34,DNAJC24,PGGT1B,GCA,RCHY1,SELENOI,SWT1,RWDD4,ZNF30,TMEM168,IPO8,FANCL,TTC17,BRAP,PHKA2,C1orf159,WBP4,UBE2G2,PAWR,MIB1,IP6K2,NEMP2,RAP2C,VEZF1,MLLT6,PRPF40A,RPL23,FASTKD1,INO80D,ICE2,AGK,BIVM,CRLF3,C20orf96,AP1G2,ZNF25,CCDC59,TRNT1,KIAA1143,DENND6A,RALGPS2,TMED8,CBLB,XPO4,AP1AR,UFL1,PKD1,RIMKLB,METAP1D,SLC25A46,PPM1L,FZD3,UTP14C,LAS1L,CEP83,LIN54,LRIG2,PARP2,PATZ1,PCED1A,IKBKB,BPNT2,DGKE,ANKRD49,PAXBP1,PLEKHA8,RSRP1,NVL,ATG14,GOLGB1,FOXP1,PWWP2A,UCHL5,MYNN,ANKLE2,SLC39A10,LINS1,PCSK4,SCAF11,DDX11,TMEM167A,CNOT7,NDUFAF7,TOR1AIP2,ZNF862,SLC23A2,PDS5B,EDEM3,ATP6V0A2,CNPY4,KIF3A,SCAMP1,GSTA4,ABCB6,MTRF1L,KHDC4,ATAD2B,DUT,PYM1,PREPL,ESCO1,MTMR10,ANGEL2,ATXN7L2,NAA15,POC5,MYSM1,METTL15,C12orf29,SMARCE1,TAF1D,MKS1,CEP95,DZANK1,SLC11A2,IFT88,TASP1,COX11,SUGT1,GTF3C3,AFTPH,DMPK,PRR14L,RPS6KB1,GABBR1,N6AMT1,KANSL3,DENND4A,MPHOSPH9,RAB40B,AGO2,RBM26,PURB,SPATA6,CCNH,CEBPZOS,MLH3,KANSL1L,ANKRD46,WDFY3,ATP8A1,ENTPD4,SMC5,HEATR5B,GEMIN6,VPS53,LCOR,PHF1,FBXL20,CENPC,HSF4,OTUD6B,TDG,ABHD13,RGL3,C2orf49,POLK,PLEKHA3,PRKAA1,HSPBAP1,WRN,RBL1,SPATA5,R3HDM2,VEZT,PSMG4,AAK1,TIA1,MOSMO,SPCS3,ZNF8,ERCC3,NOL7,SAYSD1,FAM13B,DTX3,GRIPAP1,MTG2,RNF215,NAT9,LUC7L,PTBP3,BRD8,ERCC8,USP16,MAPKAPK5,BROX,AMY2B,C8orf76,APPL1,RBM33,NOL8,TMEM237,FPGT,MPHOSPH10,SLC25A27,EXOC5,GXYLT1,ADGRL1,ICA1,LNPK,POLR1F,KCTD6,SAMD10,MAP3K2,RPRD1A,GPATCH2,LAMA5,NHLRC2,CAAP1,RUFY3,ANKRD42,LARP7,NIPSNAP3B,KMT2E,CWC22,C2orf42,DCAF16,ACVR2B,PAQR3,MORC3,PEX1,CHORDC1,S100PBP,KAT6B,PANK2,TRIM23,DTWD1,IKZF4,TEFM,TCEANC2,PIP4K2B,NF1,RNASEH2B,ANKRD50,THAP9,THAP6,E2F5,SENP7,MTRF1,TRPM7,MCM8,TRAPPC8,FAM216A,ERV3-1,MKLN1,PHIP,TMED7,KLC1,GPS2,LRRC58,DUS4L,PPP1R21,NOL12,CCDC93,LMBR1,TM2D1,ATAD1,HP1BP3,ACP6,TAPT1,CBR4,NKRF,FKTN,ALG9,EIF3E,DUSP28,PUM2,DHX36,BCDIN3D,ZCCHC7,TTLL3,C3orf33,RXRB,NEDD1,ARMC1,PIGU,B4GALT6,LRP5L,SPG11,B3GNTL1,ARL16,PUM1,ZSWIM9,CENPK,RB1CC1,FASTKD3,PET100,DYNC2LI1,DCP1A,BCS1L,TANK,DMTF1,ZDHHC23,FAM193A,NSD3,LMBR1L,LRRC1,ENY2,VMP1,GMFB,CENATAC,SMUG1,SAFB2,KAT6A,AFF4,LZTFL1,STRBP,LBR,ZBED5,SETD2,STK33,CREB1,SLC2A11,SUDS3,SPG7,WNT5A,DPY19L4,CAPN7,ADAM10,DNAJC2,PPIP5K1,IGIP,PDE7A,CLK2,MYEF2,RNF19A,RAPGEF6,ASH1L,POLG2,NFIA,PTAR1,CEP152,IFT81,CTC1,GABPB1,ANKRD39,ARMC10,VPS36,ACYP1,INTS6,HCFC2,GAR1,SKP2,RSRC2,MRPS35,NAPB,USP46,C3orf62,EIF2A,NAA25,PRMT9,ALKBH2,SLC35A3,GTDC1,C9orf72,ZBED8,CHD9,AGER,AGO3,SBNO1,C1orf52,POGLUT1,MRPL32,TYW3,CHST10,RNF111,UQCC1,C6orf62,PAN2,C2orf76,PFDN5,STAG2,PDK1,PKN2,SLC30A6,METTL4,DNASE1,HDAC8,ANKRD13C,TTC3,RINT1,TDRP,STXBP5,ATF7IP,CCDC154,SHOC2,CD2AP,RSL24D1,IQCC,RAB28,FLVCR1,EMG1,DPY19L3,MED7,SH2B1,LCORL,CSNK1G1,CEP57,HOOK3,SPICE1,ARMCX4,EIF2AK3,TMEM18,DDX55,GLMN,METTL21A,THOC1,WDR59,UBA6,ACAP2,TNKS2,LANCL1,ODR4,IFT140,OXR1,AP5M1,OPA1,DENND11,LYSMD3,LTO1,ATP7A,MSH3,ALS2CL,HMGB1,EP400,UACA,ANKDD1A,EXD3,DDX6,C17orf75,SESTD1,NBPF11,DYNLT2,ACIN1,TTC8,DNAJC19,GOLT1B,GTF2A1,INPP5E,BOD1L1,PHF11,RAB33B,CHD2,MINDY3,NBPF15,METTL14,OTUD4,HEMK1,UPF3B,TMPO,QKI,HERC1,IFT20,FBXL8,GNRH1,PSMG2,GDAP2,RAD50,CCDC82,POP5,SBF2,LPP,SYNGAP1,CHD1,NAP1L4,FBXO30,HECTD4,GTPBP8,PTCD1,EP400P1,HPS4,NBPF1,ARHGEF25,USP45,CARD8,SINHCAF,GOPC,EVI5,NCOA2,MED17,RCBTB1,ZBTB8OS,PRKAB2,RALGAPA1,TMX3,UBE2B,MDM1,MED13L,FCHO2,NAT14,ADGRV1,CCDC174,CDK5RAP1,SPIN3,MARCHF9,TBRG1,PPP1R12A,KLHDC1,FBXO46,RNPC3,C14orf28,CCDC77,DOP1A,MRI1,KIAA2026,KMT2C,CCSAP,MRPS30,STAU2,SIKE1,FBXO22,YTHDF3,CCNT2,SNX14,ORC3,NRAS,ZNF91,TRAPPC11,ZBTB3,ATP13A3,SAP18,TUBGCP5,RBM25,ENDOV,KLHL9,UBR5,EFNA3,RESF1,ERMARD,EPC1,ZNF22,ZC3H13,PANK3,ZNF717,ATXN3,MAP3K7,HEXIM2,ARGLU1,YJEFN3,NEPRO,LIG4,POLQ,VMAC,TMEM161B,KRR1,PYGO1,DYRK4,FAM149B1,DENND1B,HOOK2,PPP4R3A,TMTC3,RFX3,TMEM68,USP48,ZCCHC10,PARP8,HELZ,ELF2,NDUFA5,TMEM65,ZNF43,COA5,CACUL1,ARL5B,TPP2,NR2C1,SOS1,JMY,AVL9,ZDHHC21,WDR37,MOK,CPEB2,TADA1,MRPS26,MSL2,POT1,TMEM267,ZCCHC8,ITFG2,RRNAD1,KAT7,GNA13,ZSWIM7,AASDH,RABGAP1L,NDUFAF6,ATAD3B,YARS2,PHYKPL,SF3B1,POFUT2,ANKIB1,PRKRA,ZFP69,PHKG2,NARF,MINDY2,USP24,SOS2,IMMP2L,POGZ,BRWD3,AKAP10,RBMX,RBM4B,MRPS31,ADAT2,WDSUB1,MAP3K12,ORC4,C12orf43,FUBP1,SLC38A6,TRIM33,KIDINS220,DDX17,HAUS5,FMR1,DHX33,CTDSPL2,TMEM165,GNPDA2,SMC6,CDAN1,SLC24A1,GPALPP1,C16orf87,POLL,ABCC5,CRYZL1,SLC22A5,SUPT3H,STK36,GOLGA8B,TM9SF3,SS18,ALPK1,ZFX,RMND5A,GOLGA8A,RABGAP1,PAM16,SETD4,TSNAX,TYW5,SEPTIN7,USP3,CEP162,RBMS1,ZFP28,RAD18,ZNF17,CRBN,RNF169,ZNF84,CCP110,CACNB3,C19orf18,PDCD6,WDR26,PRPF40B,PCMTD1,JMJD1C,KBTBD2,ATF2,MRFAP1L1,GSDMB,COPS2,HELQ,CPLANE1,TCEA2,TOMM20,ERI2,PRPSAP2,CSNK1G3,MDM2,BRD1,TRIQK,SIRT3,SUGP2,PHF10,SLC25A40,ZFP14,CCDC14,MYO9A,RABGGTB,ACTR6,KLHL42,KNTC1,RANBP6,SMIM15,EXOC8,C19orf44,STRN3,SCYL3,OGT,RCCD1,CCNB1IP1,TARBP2,BLZF1,CLOCK,TUT4,RBM15,CHKB,ANAPC10,MBD2,BBIP1,OSGEP,CLK1,ATXN7,MRRF,RFX7,MAP2K4,MBD5,KPNA4,LPCAT4,ZADH2,GON4L,TRAM1,CHIC1,ORMDL1,YTHDC1,DDX51,TFCP2,GTF2H1,PASK,CCDC191,TNKS,NR2C2,FAM229A,PPP4R2,BICD1,NOP2,TMEM126B,MBTD1,SEPSECS,MAN1A2,GAS8,RAB3IP,CEP192,SCNN1D,VPS13A,ERCC5,ZFP3,KBTBD6,OARD1,THADA,CEP20,FAM172A,ILF3,LENG8,FBXL3,PRR3,PPOX,FGD4,PPWD1,SASS6,CLASP1,NHLRC3,SH3YL1,TIMM44,KRIT1,FAM136A,WAPL,SHLD2,ZZZ3,UGGT2,ZMYM5,TAMM41,GDPD3,DRC3,PCBP2,PCID2,CDK20,TRIM13,FGFR1OP2,GRPEL2,PHC1,LRRFIP2,SACS,CWC15,ZCCHC9,PUS7L,MED6,CD47,GGNBP2,ERCC6L2,FBXO3,RTTN,REV3L,ENOSF1,DZIP3,UBOX5,GANC,COA1,FNBP4,DENND6B,PTRH2,TMF1,SSH2,NEK8,NAP1L1,MLLT10,BHLHB9,DENND5B,MED23,CLEC2D,MRPS9,ZNF720,MIER3,BTBD7,PYURF,CLHC1,NDUFAF5,GPBP1,ARHGAP32,MFF,TTBK2,ZFAND6,CDK19,ARID4A,RNF115,SMAD4,AASDHPPT,VCPIP1,WDR27,PLXNB1,PNISR,GEN1,SFPQ,AMT,ZNF10,FAM126B,MORN2,RNF149,CEP120,TRMU,CDC42BPA,OSBPL9,PSMA2,SEM1,CSPP1,FAM214A,N4BP2,ARID2,STAM2,MALT1,PLEKHH1,NME5,ZCWPW1,KLHDC4,PBRM1,CCNL2,ANKRD10,TENT4A,OBI1,CHTOP,TATDN1,LSM5,DDTL,CCDC50,OSBPL7,EEA1,KAT2A,UBE2W,CHD6,BMPR1A,CLDND1,PLA2G6,TMEM86B,RNPS1,FBXW7,ZFP30,SPRTN,PRPF39,ITSN2,ZFAND1,SRRM2,PJA2,SLC4A7,CMTR2,GORAB,UBR3,CEP44,SCRN2,ANKS3,GMCL1,C10orf88,KRAS,ANKRA2,CELF1,CCDC121,EPG5,CRYGS,PMS1,ZNF83,HCN3,C5orf34,DPH1,SZT2,SMARCD1,EIF5B,ABHD10,GIN1,CPNE1,CRAMP1,NUDCD2,CCAR1,SACM1L,CENPJ,C14orf93,DPH7,TMEM131,NSMCE4A,POLR3F,SLC10A7,HINFP,XPA,PCBD2,STX2,RUFY2,WBP1,RAD17,TRIT1,AGAP6,BET1,RYBP,ZNF16,MOB1A,RBM39,GPATCH8,PGS1,FAM120B,BLOC1S6,INTS3,TRIM39,PDS5A,NEK3,CSAD,ATRX,RBM28,MOSPD1,OBSL1,IKZF5,C2CD5,FRA10AC1,ZBTB5,PTEN,BCLAF1,OGA,NUP42,IFT27,PAN3,MED28,SARS2,COPS5,BCAP29,TM2D3,CRLS1,METTL25,SPPL3,DPP8,MTG1,TOGARAM1,FAM217B,LPGAT1,FAM76B,GTPBP3,RNF217,ADNP,MRNIP,SS18L1,ING4,RSBN1L,RAD52,CEP43,DYRK1A,MARF1,INO80,CEP290,NEK1,PGGHG,COIL,WSB1,RSPRY1,USP21,ALS2,NSD2,TRIM52,COA8,NCBP3,ZC3HAV1L,TTC13,MTX3,YOD1,STRADA,TPRKB,GMEB2,NACA,MICU2,ARHGEF12,TUBD1,UTP15,FRYL,TAB3,SUCLA2,CCDC57,TET2,RABL2B,CFAP97,POLR1D,SPAG9,TTF2,EPOR,ANAPC1,WDR89,STX7,CCDC88A,N4BP2L2,DCLRE1C,FBXL4,L3HYPDH,RNF34,UNKL,GPCPD1,ZNF24,TRAPPC12,BCCIP,ULK3,IRAK4,RHOT1,TP53INP1,KLHL28,KCTD13,RSF1,NUP58,THAP2,CLK4,COMMD2,AMN1,ZUP1,USP30,ARL1,SPRN,FAM104B,SIAH1,ARIH1,PPTC7,ILKAP,ARID4B,FEM1C,LYPLAL1,METTL17,FAN1,RPAP3,SNHG32,WDR83,RABL2A,SLC25A29,TMEM39A,FOXJ3,BMI1,KDM7A,DERL2,MIER1,TTC21B,CAMKMT,NPAT,FANCF,C4orf46,RAB3GAP2,UTP23,SETD5,ZFP62,SOCS4,BRAF,NKAPD1,GUF1,SRSF2,PRRC1,TSEN54,SKIL,UBE2O,MRPL57,NT5C3A,LMNTD2,NFYA,ANKRD28,FIGNL1,R3HDM1,EBPL,FAM193B,LSM11,CZIB,ZFC3H1,MIOS,NFYB,SP3,ARHGEF7,VCPKMT,PIK3C2A,PAFAH1B1,MRPS25,PALB2,EIF2AK2,ZNF69,SLF1,MARCHF6,CUL3,LTN1,ATM,NUP54,GLI4,CDK13,FEM1B,YWHAE,RELCH,RSBN1,RBM27,ATG12,PIBF1,AHI1,LAMTOR3,CNOT6L,PGAP1,MIX23,FAM111A,USP53,ACYP2,PARP11,GCFC2,ANKMY1,ASF1A,PHF12,SNRNP48,RC3H1,ZNF44,SMG1,TAF7,CCDC138,NAA38,KANSL2,XIAP,BCLAF3,TPT1,DNAJB14,PPM1B,IFT80,ABRAXAS1,UBN2,KIAA0586,ABHD18,SLC5A3,SMCHD1,CREBRF,SMYD4,MTA3,PRKD3,ZNF41,ZC3H8,LATS1,TRAPPC6B,RAB2B,SLC38A9,EPS15,FNTA,TADA2A,TGDS,KMT2D,SYNRG,CETN3,USP40,TRAPPC13,ZSWIM1,ROCK2,ANKRD26,GSAP,ARHGAP39,C2orf68,WAC,MRE11,GK5,NOL4L,RBM6,TRMT13,SREK1IP1,ARHGAP12,ARPP19,VPS54,LYRM7,RYK,EPM2AIP1,TMEM144,CROCC,CERS5,TPR,RSAD1,PCGF6,DMXL2,NUCKS1,SRSF7,CUL4B,TBC1D15,ATAT1,ICA1L,CEP63,TMEM17,WDR11,ADPGK,YTHDF1,CEP57L1,AKAP8,VPS13B,DPY19L2,KATNBL1,TAF4,MTIF3,NDUFA7,GABPA,SLX4IP,GATAD1,TET3,TTC30B,DCAKD,TTC19,BNIP2,PPM1A,CLK3,INCA1,UBXN7,LRCH3,CNOT4,SON,MSL3,DHX57,MC1R,COQ4,RLIM,PTCD3,MAGI1,ACBD4,BRWD1,LRRC23,CSTF3,BORCS7,NAPEPLD,C12orf65,DCP1B,RO60,TBCK,RHPN1,BBS10,SP4,SETD6,TMTC4,ARL5A,LNPEP,ZNF34,KIAA0753,TMEM41B,VPS41,DDHD1,MAP4K5,TMEM128,RBM41,CCNL1,TLK1,TMEM263,ASB7,SUMO1,VPS33A,ZDHHC20,NCOR1,RBM45,NFXL1,YAE1,EGFL8,RNFT1,DCUN1D1,WDR36,MED4,RETREG3,RPS6KC1,KANSL1,ZNF3,DNMT3A,ABCD4,HAUS6,SYNJ1,PCGF2,PTPN2,NEIL1,FAM161A,POLE,C12orf4,VPS33B,DDX5,STX17,LIPT1,CWF19L2,CCND2,PNN,IRF2BP2,ARHGAP5,CBX8,SNX13,TRA2A,KMT2A,REV1,NEURL4,NRIP2,CNTROB,FAM135A,NADSYN1,IMMP1L,CFAP44,RBM19,HACE1,GABPB2,PIGA,CFDP1,ODF2L,RHOQ,TBL1XR1,NRF1,WASHC4,NSRP1,CCNC,PIGL,RIC3,ZC3H7A,ARV1,DCAF8,LIN37,CEP350,CLASP2,SUPT7L,MED31,EXTL2,RICTOR,SNX16,ARL6,OSGEPL1,RBM4,RAB11FIP2,SHC2,ANAPC7,EXOG,NCOA5,GABRE,SCAI,MYO19,GAN,TENT4B,RAB22A,WDR20,SCAPER,EZH1,LRP6,ELMOD3,FBXW2,GSTM2,SLC7A6,LIAS,NINL,MAP4K3,C12orf76,FAM228B,ELK4,TIGD1,RPL36A,USF3,FBXO11,DFFB,CWC25,TTC32,ZMAT1,UTP6,ZNF18,EIF2D,TEX10,APPBP2,CYP2R1,C1D,POC1B,CNOT2,SPIRE2,RBM48,PIKFYVE,AARSD1,RBM5,NKTR,SLC30A9,CEP170,SCYL2,WDR33,PEX5,C17orf80,TRA2B,PIAS2,ASXL1,TSC1,LRRC40,USPL1,TTC33,PRPF4B,NELFA,TRAPPC2,SNRPB2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | AKR7A2,HMOX2,MAPK3,DHDDS,SMIM12,YIF1A,ATP6V0D1,GART,HSPA8,GMPPB,MYH9,AP1B1,FTH1,PEPD,PGAP6,AP2M1,MON1A,LRP10,PKM,ATP13A2,ACP2,BTD,SHKBP1,EIF4G1,ZFPL1,UBC,ATP6V0C,ASL,NOMO2,IKBKG,BLVRB | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000275854 | ENST00000620106 | exon_skip_62623 | chr11:69079833-69079883 | -8.15 | -0.1734 | TPCN2 | ENST00000294309 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_111863 | chr14:23565815-23565892 | -8.46 | -0.1128 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_319223 | chr19:43526200-43526349 | -9.16 | -0.1255 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_382458 | chr3:38131595-38131638 | -4.22 | -0.1835 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_499567 | chr9:128325142-128325239 | -10.85 | -0.1428 | COQ4 | ENST00000300452 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_41813 | chr10:68337857-68337996 | -11.95 | -0.1077 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_95407 | chr12:95040475-95040597 | -10.78 | -0.1268 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_114365 | chr14:74290026-74290118 | -10.47 | -0.1939 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_114376 | chr14:74293153-74293248 | -10.60 | -0.1656 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_370518 | chr22:50247691-50247776 | -7.52 | -0.2149 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_374497 | chr3:49999439-49999513 | -7.94 | -0.1985 | RBM6 | ENST00000266022 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_4796 | chr1:41007448-41007545 | -8.37 | -0.1372 | CTPS1 | ENST00000372616,ENST00000372621 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_16568 | chr1:201989382-201989531 | -8.59 | -0.1227 | RNPEP | ENST00000295640 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_53559 | chr10:101793912-101793998 | -6.82 | -0.1586 | OGA | ENST00000361464 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_133217 | chr16:8635038-8635079 | -7.37 | -0.3879 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_290158 | chr17:42953723-42953778 | -6.88 | -0.1496 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_300663 | chr19:1425877-1425960 | -7.73 | -0.4068 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_446758 | chr5:178212972-178213103 | -12.95 | -0.1070 | PHYKPL | ENST00000308158 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_470226 | chr7:103307595-103307708 | -9.42 | -0.1149 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000275854 | ENST00000620106 | exon_skip_364260 | chr22:29291561-29291599 | -5.83 | -0.2082 | EWSR1 | ENST00000397938 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000275854 | ENSG00000088766 | CRLS1 | ACC,BLCA,KICH,KIRP,LAML,SKCM,THCA,UCS,UVM | KIRP | | | ENSG00000275854 | ENSG00000108773 | KAT2A | ACC,CHOL,GBM,KIRC,KIRP,LGG,LUSC,MESO,PAAD,PCPG,PRAD,SARC,SKCM,TGCT,THCA,UVM | KIRP | | | ENSG00000275854 | ENSG00000132522 | GPS2 | ACC,BLCA,CESC,CHOL,KIRC,KIRP,LGG,LUSC,PAAD,PCPG,PRAD,SKCM,TGCT,THCA,UCS,UVM | KIRP | | | ENSG00000275854 | ENSG00000162650 | ATXN7L2 | ACC,CHOL,KIRC,KIRP,LUSC,OV,PCPG,SKCM,THCA,UCS,UVM | KIRP | | | ENSG00000275854 | ENSG00000163482 | STK36 | ACC,BLCA,CESC,CHOL,ESCA,KIRC,KIRP,LUSC,MESO,OV,PAAD,PCPG,SARC,SKCM,THCA,UVM | CHOL | | | ENSG00000275854 | ENSG00000168096 | ANKS3 | ACC,CHOL,ESCA,GBM,KIRC,KIRP,LGG,LUSC,PCPG,SKCM,STAD,THCA,THYM,UVM | CHOL,KIRP | | | ENSG00000275854 | ENSG00000184465 | WDR27 | ACC,BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,SARC,STAD,TGCT,THCA,THYM,UCEC | KIRP | | | ENSG00000275854 | ENSG00000196476 | C20orf96 | ACC,CESC,CHOL,KIRP,MESO,OV,PAAD,SARC,SKCM,THCA | CHOL | | | ENSG00000275854 | ENSG00000198920 | KIAA0753 | ACC,BLCA,BRCA,CESC,CHOL,COAD,GBM,KIRC,KIRP,LAML,LUAD,LUSC,MESO,OV,PAAD,SKCM,THCA,THYM,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000204149 | AGAP6 | ACC,BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,SARC,SKCM,STAD,TGCT,THCA,UCS,UVM | KIRP | | | ENSG00000275854 | ENSG00000214021 | TTLL3 | ACC,BLCA,BRCA,CHOL,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,SKCM,STAD,THCA,UCEC | CHOL,KIRP | | | ENSG00000275854 | ENSG00000221978 | CCNL2 | ACC,BLCA,BRCA,CESC,CHOL,GBM,KIRC,KIRP,LUAD,LUSC,PAAD,PCPG,PRAD,SKCM,STAD,TGCT,THCA,THYM,UVM | KIRP | | | ENSG00000275854 | ENSG00000003147 | ICA1 | BLCA,CHOL,GBM,KIRP,SARC | CHOL | | | ENSG00000275854 | ENSG00000007545 | CRAMP1 | BLCA,CHOL,ESCA,GBM,KICH,KIRC,KIRP,LGG,LUSC,MESO,PAAD,PRAD,SARC,SKCM,THCA,THYM,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000011566 | MAP4K3 | BLCA,BRCA,CHOL,COAD,LAML,LUAD,PCPG,SARC,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000046651 | OFD1 | BLCA,CESC,CHOL,COAD,ESCA,KIRC,KIRP,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SKCM,STAD,THCA,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000069493 | CLEC2D | BLCA,BRCA,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,OV,PAAD,TGCT,UCEC,UCS | KIRP | | | ENSG00000275854 | ENSG00000088854 | C20orf194 | BLCA,BRCA,CHOL,LUAD,SARC,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000092978 | GPATCH2 | BLCA,CHOL,COAD,ESCA,KIRC,LAML,LUAD,OV,SARC,SKCM,STAD,UCEC | CHOL | | | ENSG00000275854 | ENSG00000102287 | GABRE | BLCA,CHOL,COAD,PAAD,THCA | CHOL | | | ENSG00000275854 | ENSG00000104218 | CSPP1 | BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LAML,SKCM,STAD,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000110844 | PRPF40B | BLCA,CHOL,GBM,KIRP,LUSC,OV | CHOL | | | ENSG00000275854 | ENSG00000116830 | TTF2 | BLCA,CHOL,COAD,LAML,LUAD | CHOL | | | ENSG00000275854 | ENSG00000122417 | ODF2L | BLCA,BRCA,CHOL,COAD,ESCA,KIRC,KIRP,LAML,LUAD,LUSC,OV,SKCM,STAD,TGCT,THCA,THYM,UCEC | CHOL | | | ENSG00000275854 | ENSG00000125633 | CCDC93 | BLCA,CHOL,COAD,GBM,KIRC,LUAD,LUSC,PAAD,STAD,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000129534 | MIS18BP1 | BLCA,CHOL,COAD,KIRC,LAML,LUAD,STAD,UCEC | CHOL | | | ENSG00000275854 | ENSG00000132680 | KHDC4 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PRAD,SKCM,STAD,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000134897 | BIVM | BLCA,CHOL,COAD,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SARC,SKCM,STAD,THCA,THYM,UCEC,UCS,UVM | KIRP | | | ENSG00000275854 | ENSG00000138834 | MAPK8IP3 | BLCA,CHOL,ESCA,GBM,KICH,KIRC,KIRP,LUSC,OV,PAAD,PRAD,SKCM,STAD,THCA,THYM,UVM | CHOL,KIRP | | | ENSG00000275854 | ENSG00000139625 | MAP3K12 | BLCA,CHOL,ESCA,GBM,KIRC,KIRP,LUAD,MESO,PAAD,SARC | CHOL,KIRP | | | ENSG00000275854 | ENSG00000144445 | KANSL1L | BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,LAML,LUAD,MESO,OV,SKCM,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000146858 | ZC3HAV1L | BLCA,BRCA,CHOL,COAD,LAML,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000151881 | TMEM267 | BLCA,BRCA,CHOL,COAD,KIRC,KIRP,LAML,LGG,PAAD,SKCM,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000152457 | DCLRE1C | BLCA,CHOL,COAD,KIRC,LAML,STAD,UCEC | CHOL | | | ENSG00000275854 | ENSG00000155111 | CDK19 | BLCA,CHOL,COAD,ESCA,LAML,UCEC | CHOL | | | ENSG00000275854 | ENSG00000161960 | EIF4A1 | BLCA,BRCA,CHOL,COAD,ESCA,KIRC,KIRP,LUAD,LUSC,OV,PAAD,SKCM,UCEC,UVM | KIRP | | | ENSG00000275854 | ENSG00000162769 | FLVCR1 | BLCA,CHOL,COAD,GBM,KIRC,LAML,LGG,LUAD,OV,UVM | CHOL | | | ENSG00000275854 | ENSG00000163257 | DCAF16 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,KICH,KIRC,LAML,LUAD,LUSC,MESO,PAAD,SKCM,STAD,THYM,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000163617 | CCDC191 | BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LAML,LUAD,LUSC,OV,PAAD,PRAD,SKCM,STAD,TGCT,THCA,THYM,UCEC | CHOL | | | ENSG00000275854 | ENSG00000166012 | TAF1D | BLCA,BRCA,CHOL,COAD,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SKCM,STAD,UCEC,UVM | CHOL,KIRP | | | ENSG00000275854 | ENSG00000166839 | ANKDD1A | BLCA,CHOL,GBM,LUAD,UVM | CHOL | | | ENSG00000275854 | ENSG00000167615 | LENG8 | BLCA,BRCA,CESC,CHOL,ESCA,GBM,KICH,KIRC,KIRP,LUSC,PAAD,PRAD,SKCM,STAD,THCA,UVM | CHOL | | | ENSG00000275854 | ENSG00000173681 | BCLAF3 | BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,PAAD,SKCM,STAD,THCA,UCEC | CHOL | | | ENSG00000275854 | ENSG00000175265 | GOLGA8A | BLCA,BRCA,CESC,COAD,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,OV,PAAD,PCPG,PRAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRP | | | ENSG00000275854 | ENSG00000175455 | CCDC14 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,KIRC,KIRP,LAML,LGG,LUAD,LUSC,OV,PAAD,PRAD,SKCM,STAD,TGCT,THCA,UCEC,UVM | KIRP | | | ENSG00000275854 | ENSG00000184445 | KNTC1 | BLCA,CHOL,COAD,KICH,KIRC,KIRP,LAML,LUAD,LUSC,STAD,UCEC | CHOL,KIRP | | | ENSG00000275854 | ENSG00000185917 | SETD4 | BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LAML,LGG,LUSC,MESO,PAAD,PRAD,SARC,SKCM,STAD,THCA,THYM,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000186088 | GSAP | BLCA,BRCA,COAD,ESCA,KIRC,KIRP,PAAD,STAD,THCA,UCEC | KIRP | | | ENSG00000275854 | ENSG00000186166 | CENATAC | BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SKCM,STAD,THCA,THYM,UCEC,UVM | KIRP | | | ENSG00000275854 | ENSG00000197183 | NOL4L | BLCA,CHOL,MESO,SARC,UCS | CHOL | | | ENSG00000275854 | ENSG00000197283 | SYNGAP1 | BLCA,CESC,CHOL,ESCA,GBM,KIRP,OV,PAAD,SKCM,UVM | CHOL | | | ENSG00000275854 | ENSG00000197375 | SLC22A5 | BLCA,CHOL,ESCA,KIRC,PAAD,THCA | CHOL | | | ENSG00000275854 | ENSG00000198707 | CEP290 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,KIRC,KIRP,LAML,LUAD,LUSC,MESO,PAAD,PRAD,SKCM,STAD,THYM,UCEC | CHOL | | | ENSG00000275854 | ENSG00000204116 | CHIC1 | BLCA,BRCA,CHOL,COAD,GBM,KIRC,LAML,LUAD,UCEC | CHOL | | | ENSG00000275854 | ENSG00000204130 | RUFY2 | BLCA,BRCA,CHOL,COAD,ESCA,KIRC,KIRP,LAML,PAAD,SARC,SKCM,STAD,UCEC | CHOL | | | ENSG00000275854 | ENSG00000213139 | CRYGS | BLCA,CHOL,KIRP,PAAD,TGCT,UCS | CHOL,KIRP | | | ENSG00000275854 | ENSG00000215252 | GOLGA8B | BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UVM | KIRP | | | ENSG00000275854 | ENSG00000221886 | ZBED8 | BLCA,CESC,CHOL,COAD,KIRC,LAML,LGG,PAAD,SKCM,STAD,THCA,UVM | CHOL | | | ENSG00000275854 | ENSG00000256525 | POLG2 | BLCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PRAD,SARC,SKCM,STAD,THCA,UCEC,UVM | KIRP | | | ENSG00000275854 | ENSG00000258839 | MC1R | BLCA,CHOL,KIRP,LUSC,PAAD,PCPG,THCA | CHOL,KIRP | | | ENSG00000275854 | ENSG00000062716 | VMP1 | BRCA,CHOL,COAD,KIRC,KIRP,LUAD,LUSC,UCEC | KIRP | | | ENSG00000275854 | ENSG00000122970 | IFT81 | BRCA,CHOL,COAD,ESCA,KIRC,KIRP,LAML,LUSC,MESO,OV,PAAD,SKCM,STAD,THYM,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000144134 | RABL2A | BRCA,CHOL,ESCA,GBM,KIRC,KIRP,LUSC,MESO,OV,PAAD,SARC,THCA | CHOL | | | ENSG00000275854 | ENSG00000146373 | RNF217 | BRCA,COAD,KIRC,KIRP,THCA,UCEC | KIRP | | | ENSG00000275854 | ENSG00000204681 | GABBR1 | BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,PAAD,SARC,SKCM,STAD,THCA,UCS,UVM | CHOL,KIRP | | | ENSG00000275854 | ENSG00000111785 | RIC8B | CESC,CHOL,COAD,ESCA,KIRP,LAML,LUAD,MESO,PAAD,SARC,SKCM,STAD,THCA,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000137343 | ATAT1 | CESC,CHOL,KIRC,KIRP,LGG,OV,PAAD,SARC,SKCM,STAD,THCA | CHOL | | | ENSG00000275854 | ENSG00000139146 | SINHCAF | CESC,CHOL,LAML,OV,SKCM,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000147437 | GNRH1 | CESC,CHOL,KIRC,KIRP,LAML,PAAD | CHOL,KIRP | | | ENSG00000275854 | ENSG00000178498 | DTX3 | CESC,CHOL,KIRP,LUSC,MESO,PAAD,PCPG,THCA,THYM,UCS | CHOL | | | ENSG00000275854 | ENSG00000204305 | AGER | CESC,CHOL,GBM,KIRC,KIRP,LGG,PAAD,SARC,STAD,TGCT,UCS,UVM | CHOL,KIRP | | | ENSG00000275854 | ENSG00000205517 | RGL3 | CESC,CHOL,KIRP,PAAD,THCA | CHOL | | | ENSG00000275854 | ENSG00000250067 | YJEFN3 | CESC,CHOL,ESCA,KIRC,KIRP,LGG,LUSC,PAAD,PCPG,UCS | CHOL,KIRP | | | ENSG00000275854 | ENSG00000004777 | ARHGAP33 | CHOL,KIRP,LUSC,PAAD,SKCM,THCA | CHOL | | | ENSG00000275854 | ENSG00000006025 | OSBPL7 | CHOL,GBM,KIRP,LGG,LUSC,THCA | CHOL,KIRP | | | ENSG00000275854 | ENSG00000010626 | LRRC23 | CHOL,KIRP,PAAD,PCPG,THCA | CHOL,KIRP | | | ENSG00000275854 | ENSG00000057935 | MTA3 | CHOL,GBM,MESO,SARC,THCA,UCS,UVM | CHOL | | | ENSG00000275854 | ENSG00000066117 | SMARCD1 | CHOL,KICH,KIRP,OV,PAAD,SARC,THCA,UCS | CHOL | | | ENSG00000275854 | ENSG00000078246 | TULP3 | CHOL,KIRP,MESO,OV,STAD,UCS | CHOL | | | ENSG00000275854 | ENSG00000080839 | RBL1 | CHOL,COAD,LAML,LUAD,UCEC | CHOL | | | ENSG00000275854 | ENSG00000090971 | NAT14 | CHOL,KIRP,PAAD,PCPG,THCA | CHOL,KIRP | | | ENSG00000275854 | ENSG00000095066 | HOOK2 | CHOL,GBM,LGG,LUSC,PAAD,UVM | CHOL | | | ENSG00000275854 | ENSG00000104936 | DMPK | CHOL,GBM,KIRP,THCA,THYM | CHOL | | | ENSG00000275854 | ENSG00000109685 | NSD2 | CHOL,COAD,KIRC,LUAD,UVM | CHOL | | | ENSG00000275854 | ENSG00000109881 | CCDC34 | CHOL,KICH,KIRP,LAML,UVM | CHOL | | | ENSG00000275854 | ENSG00000112981 | NME5 | CHOL,KIRP,PAAD,THCA,UVM | CHOL | | | ENSG00000275854 | ENSG00000115257 | PCSK4 | CHOL,KIRP,LGG,PAAD,PCPG,THCA | KIRP | | | ENSG00000275854 | ENSG00000115271 | GCA | CHOL,COAD,ESCA,KIRP,MESO,UVM | CHOL | | | ENSG00000275854 | ENSG00000115526 | CHST10 | CHOL,MESO,OV,SARC,THYM | CHOL | | | ENSG00000275854 | ENSG00000115687 | PASK | CHOL,ESCA,KIRP,LUSC,OV,PAAD,STAD | CHOL | | | ENSG00000275854 | ENSG00000116580 | GON4L | CHOL,COAD,ESCA,LAML,LUAD,STAD,UCEC | CHOL | | | ENSG00000275854 | ENSG00000119640 | ACYP1 | CHOL,COAD,KIRC,KIRP,LAML,LUAD,PAAD,PRAD,STAD,TGCT,THCA,THYM,UVM | CHOL | | | ENSG00000275854 | ENSG00000119772 | DNMT3A | CHOL,KIRC,KIRP,PAAD,SARC,SKCM,UVM | CHOL | | | ENSG00000275854 | ENSG00000122643 | NT5C3A | CHOL,COAD,LAML,PAAD,UVM | CHOL | | | ENSG00000275854 | ENSG00000123219 | CENPK | CHOL,COAD,LAML,LUAD,STAD,UCEC | CHOL | | | ENSG00000275854 | ENSG00000125885 | MCM8 | CHOL,COAD,KIRP,LAML,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000127328 | RAB3IP | CHOL,COAD,TGCT,THYM,UCEC,UCS | CHOL | | | ENSG00000275854 | ENSG00000127922 | SEM1 | CHOL,KICH,KIRP,THCA,UVM | KIRP | | | ENSG00000275854 | ENSG00000130590 | SAMD10 | CHOL,KIRP,LGG,PCPG,UCS | CHOL | | | ENSG00000275854 | ENSG00000130702 | LAMA5 | CHOL,LUSC,MESO,PAAD,THYM | CHOL | | | ENSG00000275854 | ENSG00000134851 | TMEM165 | CHOL,KIRC,LAML,LUAD,THYM,UVM | CHOL | | | ENSG00000275854 | ENSG00000135722 | FBXL8 | CHOL,KIRP,LUSC,PAAD,SKCM,THCA | KIRP | | | ENSG00000275854 | ENSG00000137269 | LRRC1 | CHOL,LAML,SKCM,THYM,UVM | CHOL | | | ENSG00000275854 | ENSG00000138036 | DYNC2LI1 | CHOL,COAD,KIRP,LAML,LGG,LUAD,MESO,SARC,SKCM,THCA,THYM,UCEC,UVM | CHOL,KIRP | | | ENSG00000275854 | ENSG00000139266 | MARCHF9 | CHOL,KICH,KIRP,PAAD,PCPG,THCA,UCS | CHOL | | | ENSG00000275854 | ENSG00000139537 | CCDC65 | CHOL,KIRC,KIRP,LAML,THCA | CHOL,KIRP | | | ENSG00000275854 | ENSG00000139624 | CERS5 | CHOL,COAD,KIRP,LUAD,PAAD,SARC,STAD,THYM,UCS | CHOL | | | ENSG00000275854 | ENSG00000141013 | GAS8 | CHOL,PAAD,SARC,THCA,THYM | CHOL | | | ENSG00000275854 | ENSG00000141298 | SSH2 | CHOL,COAD,KIRP,LUAD,UCEC | KIRP | | | ENSG00000275854 | ENSG00000141570 | CBX8 | CHOL,KIRP,PAAD,SARC,THCA,UCS | CHOL | | | ENSG00000275854 | ENSG00000142102 | PGGHG | CHOL,KIRP,SKCM,THCA,THYM | KIRP | | | ENSG00000275854 | ENSG00000143258 | USP21 | CHOL,KIRP,LGG,MESO,PAAD,SARC,THCA | CHOL | | | ENSG00000275854 | ENSG00000143590 | EFNA3 | CHOL,SARC,TGCT,THCA,UCS | CHOL | | | ENSG00000275854 | ENSG00000143643 | TTC13 | CHOL,COAD,ESCA,KIRC,KIRP,LUAD,LUSC,PAAD,STAD,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000143748 | NVL | CHOL,COAD,LAML,LUAD,STAD,UVM | CHOL | | | ENSG00000275854 | ENSG00000147799 | ARHGAP39 | CHOL,KIRP,SARC,THCA,THYM | CHOL | | | ENSG00000275854 | ENSG00000149716 | LTO1 | CHOL,GBM,KIRC,KIRP,LGG,PAAD,THCA,THYM,UVM | CHOL | | | ENSG00000275854 | ENSG00000151849 | CENPJ | CHOL,COAD,KIRC,KIRP,LUAD,LUSC,MESO,OV,PAAD,SKCM,STAD,UCEC,UCS,UVM | CHOL | | | ENSG00000275854 | ENSG00000155755 | TMEM237 | CHOL,LAML,THYM,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000158106 | RHPN1 | CHOL,GBM,KIRP,PAAD,SARC,THCA | CHOL,KIRP | | | ENSG00000275854 | ENSG00000160051 | IQCC | CHOL,ESCA,KIRC,KIRP,PAAD,THCA | CHOL | | | ENSG00000275854 | ENSG00000162572 | SCNN1D | CHOL,KIRC,KIRP,LGG,PAAD,PCPG,PRAD,TGCT | KIRP | | | ENSG00000275854 | ENSG00000163162 | RNF149 | CHOL,COAD,KIRP,LUAD,THYM,UCEC,UVM | KIRP | | | ENSG00000275854 | ENSG00000163281 | GNPDA2 | CHOL,COAD,KIRC,LAML,LUAD,SKCM,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000164983 | TMEM65 | CHOL,COAD,KIRC,SKCM,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000167535 | CACNB3 | CHOL,KICH,KIRP,MESO,SARC | CHOL,KIRP | | | ENSG00000275854 | ENSG00000169118 | CSNK1G1 | CHOL,COAD,LAML,LUAD,UCEC,UVM | CHOL | | | ENSG00000275854 | ENSG00000171792 | RHNO1 | CHOL,KIRP,PCPG,UCS,UVM | CHOL | | | ENSG00000275854 | ENSG00000171962 | DRC3 | CHOL,KIRP,OV,THCA,THYM | CHOL | | | ENSG00000275854 | ENSG00000174943 | KCTD13 | CHOL,ESCA,KICH,KIRC,KIRP,PAAD,TGCT,THCA,UCS,UVM | CHOL,KIRP | | | ENSG00000275854 | ENSG00000176454 | LPCAT4 | CHOL,GBM,PCPG,THYM,UVM | CHOL | | | ENSG00000275854 | ENSG00000182173 | TSEN54 | CHOL,KIRP,LGG,PAAD,THCA | CHOL | | | ENSG00000275854 | ENSG00000187109 | NAP1L1 | CHOL,COAD,LAML,PAAD,PCPG,SKCM,STAD,UVM | CHOL | | | ENSG00000275854 | ENSG00000187535 | IFT140 | CHOL,KIRP,MESO,SARC,THCA,THYM | CHOL | | | ENSG00000275854 | ENSG00000196659 | TTC30B | CHOL,COAD,LAML,MESO,UVM | CHOL | | | ENSG00000275854 | ENSG00000197119 | SLC25A29 | CHOL,KIRP,OV,PAAD,PRAD,THCA,UVM | CHOL | | | ENSG00000275854 | ENSG00000204387 | SNHG32 | CHOL,KIRP,PAAD,SARC,SKCM,THCA,THYM,UCS | CHOL | | | ENSG00000275854 | ENSG00000205208 | C4orf46 | CHOL,COAD,KIRP,LAML,UVM | CHOL | | | ENSG00000275854 | ENSG00000205593 | DENND6B | CHOL,GBM,KIRP,PAAD,THCA,THYM | CHOL | | | ENSG00000275854 | ENSG00000240038 | AMY2B | CHOL,GBM,KIRC,KIRP,THCA | KIRP | | | ENSG00000275854 | ENSG00000240230 | COX19 | CHOL,KICH,KIRC,KIRP,PAAD,THCA,THYM,UCS,UVM | CHOL | | | ENSG00000275854 | ENSG00000240771 | ARHGEF25 | CHOL,KIRP,MESO,PCPG,SKCM,THCA | CHOL | | | ENSG00000275854 | ENSG00000241343 | RPL36A | CHOL,KICH,PCPG,SKCM,TGCT,UVM | CHOL | | | ENSG00000275854 | ENSG00000273899 | NOL12 | CHOL,GBM,KIRC,KIRP,LGG,LUSC,PAAD,THCA,UVM | CHOL | | | ENSG00000275854 | ENSG00000275023 | MLLT6 | CHOL,GBM,KIRP,PAAD,UVM | CHOL | | | ENSG00000275854 | ENSG00000278259 | MYO19 | CHOL,KIRP,LGG,PAAD,UVM | CHOL | | | ENSG00000275854 | ENSG00000093167 | LRRFIP2 | COAD,KIRC,KIRP,LAML,LUAD,UCEC,UVM | KIRP | | | ENSG00000275854 | ENSG00000114251 | WNT5A | COAD,KIRP,LUAD,THYM,UCEC | KIRP | | | ENSG00000275854 | ENSG00000144802 | NFKBIZ | COAD,ESCA,KIRC,KIRP,LUAD,UCEC | KIRP | | | ENSG00000275854 | ENSG00000159147 | DONSON | COAD,KIRC,KIRP,PCPG,UVM | KIRP | | | ENSG00000275854 | ENSG00000151835 | SACS | GBM,KIRP,LAML,LUAD,UCEC | KIRP | | | ENSG00000275854 | ENSG00000118971 | CCND2 | KIRP,LUAD,SARC,THYM,UCS | KIRP | | | ENSG00000275854 | ENSG00000180089 | TMEM86B | KIRP,PAAD,PCPG,TGCT,THCA | KIRP | | | ENSG00000275854 | ENSG00000241404 | EGFL8 | KIRP,LGG,SKCM,THYM,UCS,UVM | KIRP | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000275854 | ENST00000620106 | ASL | ENSG00000126522 | ENST00000380839 | -0.1109 | 441 | - | CHOL | | ENSG00000275854 | ENST00000620106 | ASL | ENSG00000126522 | ENST00000395332 | -2.9800 | 387 | - | CHOL | | ENSG00000275854 | ENST00000620106 | ASL | ENSG00000126522 | ENST00000395331 | -0.8400 | 401 | - | CHOL | | ENSG00000275854 | ENST00000620106 | BLVRB | ENSG00000090013 | ENST00000595483 | -0.1256 | 621 | - | CHOL | | ENSG00000275854 | ENST00000620106 | BLVRB | ENSG00000090013 | ENST00000263368 | -0.1256 | 621 | - | CHOL | | ENSG00000275854 | ENST00000620106 | PEPD | ENSG00000124299 | ENST00000244137 | -0.1629 | 1 | - | CHOL,KIRP | | ENSG00000275854 | ENST00000620106 | PEPD | ENSG00000124299 | ENST00000397032 | -0.1629 | 1 | - | CHOL,KIRP | | ENSG00000275854 | ENST00000620106 | BTD | ENSG00000169814 | ENST00000449107 | -0.1056 | 483 | - | CHOL |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000275854.1 | ENST00000620106.1 | 95 | 122 | 409 |
|
