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lncRNA: ENSG00000275764

Summary for RP11-582E3.6

Gene summary

Gene information	Ensembl ID	ENSG00000275764
	Gene symbol	RP11-582E3.6
	Gene name
	HGNC
	Entrez ID
	Gene type	lincRNA
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-582E3.6

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

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lncRNA-Protein interaction for RP11-582E3.6

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000275764	ENST00000620519	RP11-582E3.6	ENSG00000116731	PRDM2	75.47	93.2272	Q13029	TF,Epi	NA
ENSG00000275764	ENST00000620519	RP11-582E3.6	ENSG00000123636	BAZ2B	117.93	90.0035	Q9UIF8	TF,Epi	NA
ENSG00000275764	ENST00000620519	RP11-582E3.6	ENSG00000084093	REST	62.24	93.7161	Q13127	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000275764	ENST00000620519	RP11-582E3.6	ENSG00000025293	PHF20	116.83	90.6787	Q9BVI0	TF,Epi	NA
ENSG00000275764	ENST00000620519	RP11-582E3.6	ENSG00000144747	TMF1	99.66	91.3085	P82094	TF	NA
ENSG00000275764	ENST00000620519	RP11-582E3.6	ENSG00000116731	PRDM2	75.47	93.53	Q13029	TF,Epi	NA
ENSG00000275764	ENST00000620519	RP11-582E3.6	ENSG00000084093	REST	62.24	93.4935	Q13127	TF,Epi	NA
ENSG00000275764	ENST00000620519	RP11-582E3.6	ENSG00000256223	ZNF10	6.62	92.188	P21506	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000275764	ENST00000620519	RP11-582E3.6	ENSG00000091009	RBM27	74.09	91.1381	Q9P2N5	RBP	NA
ENSG00000275764	ENST00000620519	RP11-582E3.6	ENSG00000139746	RBM26	72.36	94.2246	Q5T8P6	RBP	NA
ENSG00000275764	ENST00000620519	RP11-582E3.6	ENSG00000100201	DDX17	57.25	91.9112	Q92841	RBP	NA

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lncRNA-DNA interaction for RP11-582E3.6

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ZNF30,PUM1,XRN1,ILF3,CPEB2,RBM39,CIRBP,LCORL,MYSM1,NRF1,AKAP8,ARID2,SUGP2,DMTF1,RBM27,ZNF24,DDX52,GABPA,IKZF5,DDX55,ZMAT3,TET3,ZFP14,RNPC3,ZFP69,SAFB2,ATMIN,THOC1,ZNF25,LARP7,TRNT1,CNOT4,SON,CWC22,LSM5,ZBED5,ZZZ3,CENPT,TTC14,CREB1,RC3H1,SP100,ZNF44,EEA1,SRSF4,RBMX,RBM4B,CSTF3,PUS3,RBM26,ZFP1,PURB,PPIL4,CWC15,PUS7L,CLOCK,DHX34,NFIA,FUBP1,ZFP30,SP4,CPSF7,MBD2,THAP9,THOC2,DDX6,TSN,ZBTB6,THAP6,DDX17,E2F5,RFX7,ZNF22,FMR1,LCOR,MECP2,PHF1,FOXJ3,ZC3H8,TTF1,HSF4,RBM41,DZIP3,ZFP62,PAIP1,ZNF45,CELF1,KRR1,TMF1,ELK4,TIGD1,RBM45,PRDM2,MBD4,AGO3,SRSF2,MYNN,TFCP2,ZMAT1,ZNF83,SKIL,NSUN6,RFX3,NXF1,ZFX,ZNF8,ZNF18,NKRF,NR2C2,SYNJ1,DDX11,PUS10,GPBP1,C1D,RBM6,HMGN3,ZNF14,NOP2,LSM11,PUM2,XPO1,RBM5,ELF2,SMAD4,RBMS1,NFYB,ZNF43,SP3,ZNF17,ZNF84,DDX42,BAZ2B,TRA2A,RBM8A,KMT2A,SRSF7,HINFP,XPA,NR2C1,TFDP2,ZFP3,PCGF6,SFPQ,TET2,RBM33,NOL8,ATF2,ZNF10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-582E3.6

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

EIF3G

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000275764	ENST00000620519	exon_skip_370518	chr22:50247691-50247776	-10.36	-0.1594	HDAC10	ENST00000216271	Frame-shift
ENSG00000275764	ENST00000620519	exon_skip_382458	chr3:38131595-38131638	-7.48	-0.3400	ACAA1	ENST00000333167	Frame-shift
ENSG00000275764	ENST00000620519	exon_skip_111863	chr14:23565815-23565892	-10.11	-0.1366	AP1G2	ENST00000308724,ENST00000397120	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-582E3.6

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID	RBP ID	RBP Gene Name	Exon Skipping ID	Skipped Exon	EX Gene Name	EX Affected TransID	ORF_anno	Cancer Type
ENSG00000275764	ENSG00000139746	RBM26	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	UVM,SKCM,THYM,PAAD,THCA

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000275764.1	ENST00000620519.1	62	1921	2109

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential