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lncRNA: ENSG00000275560

Summary for RP11-180M15.7

Gene summary

Gene information	Ensembl ID	ENSG00000275560
	Gene symbol	RP11-180M15.7
	Gene name
	HGNC
	Entrez ID
	Gene type	sense_intronic
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-180M15.7

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000275560	3.219321e+01	1.762234e+00	1.310648e-01	1.344552e+01	3.270000e-41	5.500000e-40	UP	KIRC
ENSG00000275560	3.868300e+01	1.028161e+00	1.391810e-01	7.387224e+00	1.500000e-13	6.720000e-13	UP	LUSC
ENSG00000275560	6.226982e+01	1.214706e+00	1.250299e-01	9.715323e+00	2.590000e-22	1.870000e-21	UP	BRCA
ENSG00000275560	3.330756e+01	1.353344e+00	1.562965e-01	8.658829e+00	4.770000e-18	4.210000e-17	UP	LUAD
ENSG00000275560	3.243461e+01	1.273482e+00	1.905216e-01	6.684185e+00	2.320000e-11	1.480000e-10	UP	COAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

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lncRNA-Protein interaction for RP11-180M15.7

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000123636	BAZ2B	69.85	94.7798	Q9UIF8	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000032219	ARID4A	60.53	93.5709	P29374	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000054267	ARID4B	60.23	94.5551	Q4LE39	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000171681	ATF7IP	56.3	92.0526	Q6VMQ6	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000005483	KMT2E	54.45	95.1036	Q8IZD2	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000165671	NSD1	53.92	95.5101	Q96L73	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000181555	SETD2	53.69	95.765	Q9BYW2	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000114933	INO80D	52.01	90.298	Q53TQ3	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000165288	BRWD3	49.98	94.4185	Q6RI45	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000104517	UBR5	49.37	93.4319	O95071	RBP,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000005339	CREBBP	48.72	95.409	Q92793	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000073614	KDM5A	48.46	90.9452	P29375	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000100393	EP300	48.09	95.4778	Q09472	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000055609	KMT2C	47.89	90.6628	Q8NEZ4	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000116539	ASH1L	46.51	93.6657	Q9NR48	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000078403	MLLT10	43.7	92.788	P55197	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000171988	JMJD1C	43.64	94.5702	Q15652	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000012048	BRCA1	43.19	94.5155	P38398	RBP,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000115548	KDM3A	42.56	90.2591	Q9Y4C1	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000168769	TET2	41.63	94.7008	Q6N021	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000164190	NIPBL	41.52	95.4939	Q6KC79	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000143970	ASXL2	41.37	91.8646	Q76L83	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000084093	REST	38.37	94.4659	Q13127	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000183495	EP400	33.79	94.9145	Q96L91	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000124151	NCOA3	28.31	92.2058	Q9Y6Q9	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000116560	SFPQ	27.29	90.4518	P23246	RBP,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000120071	KANSL1	24.13	91.5423	Q7Z3B3	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000171456	ASXL1	22.0	93.8496	Q8IXJ9	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000163961	RNF168	1.25	91.4295	Q8IYW5	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000067369	TP53BP1	68.72	93.2119	Q12888	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000128908	INO80	65.5	90.2404	Q9ULG1	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000168137	SETD5	60.78	92.9214	Q9C0A6	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000146247	PHIP	60.42	94.336	Q8WWQ0	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000118058	KMT2A	56.59	95.9047	Q03164	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000132780	NASP	56.3	93.8862	P49321	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000085224	ATRX	51.04	96.3074	P46100	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000185658	BRWD1	50.34	95.3644	Q9NSI6	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000101126	ADNP	48.68	91.6106	Q9H2P0	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000141027	NCOR1	46.83	95.3265	O75376	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000116731	PRDM2	46.58	93.8258	Q13029	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000187605	TET3	44.41	93.3715	O43151	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000147133	TAF1	43.85	91.3211	P21675	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000131149	GSE1	41.57	92.9729	Q14687	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000139613	SMARCC2	40.36	94.1647	Q8TAQ2	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000171634	BPTF	39.46	94.8653	Q12830	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000140396	NCOA2	38.12	92.4246	Q15596	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000049618	ARID1B	23.76	92.9482	Q8NFD5	Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000156650	KAT6B	21.89	95.813	Q8WYB5	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000123636	BAZ2B	69.85	94.331	Q9UIF8	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000102908	NFAT5	61.29	92.0907	O94916	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000144747	TMF1	60.05	92.9998	P82094	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000118058	KMT2A	56.59	96.0148	Q03164	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000181827	RFX7	48.98	90.4436	Q2KHR2	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000101126	ADNP	48.68	91.7753	Q9H2P0	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000116731	PRDM2	46.58	94.1858	Q13029	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000116539	ASH1L	46.51	93.8187	Q9NR48	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000187605	TET3	44.41	93.6577	O43151	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000147124	ZNF41	42.54	91.7161	P51814	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000168769	TET2	41.63	94.9356	Q6N021	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000171634	BPTF	39.46	94.802	Q12830	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000084093	REST	38.37	95.0321	Q13127	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000140396	NCOA2	38.12	91.5328	Q15596	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000159140	SON	37.37	91.7267	P18583	TF,RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000167232	ZNF91	36.6	94.2708	Q05481	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000117000	RLF	34.4	93.5504	Q13129	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000196670	ZFP62	31.58	91.7215	Q8NB50	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000170448	NFXL1	29.81	90.3298	Q6ZNB6	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000148516	ZEB1	29.74	90.6783	P37275	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000126804	ZBTB1	29.03	92.2324	Q9Y2K1	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000140836	ZFHX3	28.92	95.1731	Q15911	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000124151	NCOA3	28.31	92.6507	Q9Y6Q9	TF,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000198040	ZNF84	27.61	92.2265	P51523	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000146587	RBAK	26.74	91.232	Q9NYW8	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000166432	ZMAT1	20.31	90.4485	Q5H9K5	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000186272	ZNF17	19.4	90.4944	P17021	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000164631	ZNF12	19.21	90.0618	P17014	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000062194	GPBP1	16.58	90.0932	Q86WP2	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000197857	ZNF44	11.6	91.3578	P15621	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000187792	ZNF70	4.86	90.503	Q9UC06	TF	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000146757	ZNF92	1.56	90.0539	Q03936	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000004534	RBM6	51.09	94.1279	P78332	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000104517	UBR5	49.37	93.7506	O95071	RBP,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000198000	NOL8	48.21	94.4593	Q76FK4	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000106344	RBM28	45.83	92.9656	Q9NW13	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000137776	SLTM	44.93	95.2498	Q9NWH9	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000091009	RBM27	44.91	90.6896	Q9P2N5	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000012048	BRCA1	43.19	95.0176	P38398	RBP,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000139746	RBM26	43.09	92.3186	Q5T8P6	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000125676	THOC2	40.59	92.6658	Q8NI27	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000159140	SON	37.37	92.0374	P18583	TF,RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000100201	DDX17	33.99	91.2817	Q92841	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000135870	RC3H1	32.4	91.8518	Q5TC82	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000116560	SFPQ	27.29	91.0408	P23246	RBP,Epi	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000129351	ILF3	23.71	92.0027	Q12906	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000161813	LARP4	21.31	90.3056	Q71RC2	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000133226	SRRM1	20.33	95.0796	Q8IYB3	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000102081	FMR1	17.54	91.6516	Q06787	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000167978	SRRM2	15.15	96.7887	Q9UQ35	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000184863	RBM33	14.9	92.1939	Q96EV2	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000124193	SRSF6	6.75	92.1345	Q13247	RBP	NA
ENSG00000275560	ENST00000614874	RP11-180M15.7	ENSG00000147274	RBMX	2.9	90.8156	P38159	RBP	NA

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lncRNA-DNA interaction for RP11-180M15.7

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

RPAP2,REPS1,VAMP1,PUM1,CPLANE1,TTF2,MYCBP2,ERI2,CSNK1G3,MFSD8,WDFY1,ANAPC1,CENPK,SPATA13,TTC31,MAPK8IP3,CHM,DCP1A,SUGP2,NCAPD2,N4BP2L2,DMTF1,FBXL4,SLF2,L3HYPDH,ANKRD44,TMEM184C,FAM193A,UNKL,SENP1,LMBR1L,GPCPD1,NUP50,UBE4A,IRAK4,VMP1,GMFB,ZFP14,CENATAC,WDR5B,ST7L,KLHL28,MSANTD2,TUBGCP6,CCDC14,NUP58,SMARCC2,AFF4,MYO9A,ARAP2,CLK4,FAM133B,ZBED5,SETD2,TTC14,CCNK,KNTC1,MEX3C,CREB1,KDM5A,PPIP5K2,CAPN7,SMAD2,SCYL3,ADD3,OGT,PDE7A,CLK2,NCBP1,RAPGEF6,ARID4B,ASH1L,POLG2,FEM1C,PTAR1,TUT4,DNAJC16,RBM15,CEP152,IFT81,FAN1,RIC8B,TOP2B,CPSF7,BBIP1,THOC2,CTC1,CLK1,ATXN7,OTULIN,GABPB1,RABL2A,NASP,OFD1,VPS36,PEAK1,INTS6,FBXO38,RFX7,TMEM39A,HCFC2,HELLS,FOXJ3,CD84,PURA,KDM7A,MBD5,MIER1,RSRC2,TTC21B,SNX27,NPAT,RAB3GAP2,NAA25,NEMP1,PRMT9,EML4,SETD5,ZFP62,MIS18BP1,GON4L,SOCS4,MDN1,SLC35A3,DOCK10,C9orf72,CHIC1,ORMDL1,CHD9,BRAF,YTHDC1,TOPBP1,BACH1,AGO3,ORC2,NFKBIZ,SBNO1,PHC3,POGLUT1,PASK,LRRC37B,ZZEF1,RASGEF1B,INTS2,SUPT20H,CCDC191,NXF1,RNF111,TNKS,ANKRD28,NR2C2,PAN2,R3HDM1,PPP4R2,TAF1A,SMARCAD1,STAG2,PKN2,CCDC186,CDK17,NRDE2,GLS,ATG2B,GRK3,ZFC3H1,MTMR4,MBTD1,SP3,SEPSECS,ARHGEF7,MAN1A2,MANEA,ANKRD13C,CCNT1,VCPKMT,HIPK1,CEP192,TTC3,EIF4A1,PIK3C2A,VPS13A,PALB2,PGGT1B,ATF7IP,FMNL3,ZFP3,SLF1,MARCHF6,SWT1,CUL3,LTN1,HERC4,ATM,THADA,FAM172A,FLVCR1,FANCL,ILF3,MED14,STK17B,TTC17,BRAP,CDK13,LENG8,LCORL,TRAF6,CSNK1G1,CEP57,SPICE1,PPWD1,RELCH,RSBN1,PRPF40A,SLC30A7,SASS6,RBM27,ATG12,PIBF1,AHI1,ZNF70,CLASP1,INO80D,NHLRC3,ICE2,CRLF3,CNOT6L,DDX55,CASP2,KRIT1,AP1G2,FAM111A,COG5,PARP11,THOC1,ANKMY1,UBA6,ACAP2,UBR1,FANCA,PHF12,TNKS2,ZZZ3,DENND6A,RALGPS2,ZMYM5,C2CD3,UBR4,TAMM41,PDP2,TMED8,AP5M1,SNRNP48,RC3H1,CBLB,XPO4,SETX,ZNF44,TRIM13,SMG1,UFL1,DENND11,FGFR1OP2,LYSMD3,PHC1,ATP7A,BCLAF3,DNAJB14,PPM1B,PUS7L,MSH3,MCM9,IFT80,CEP83,GGNBP2,EP400,UBN2,BMP2K,ERCC6L2,DDX6,KIAA0586,LRIG2,ABHD18,ATP11C,NEMF,RTTN,REV3L,SMCHD1,SLX4,CREBRF,MECP2,SMYD4,IKBKB,NBPF11,AGTPBP1,PRKD3,ACIN1,ZNF41,ZC3H8,LATS1,SART3,DGKE,ENOSF1,ANKRD49,PAXBP1,SLC38A9,EPS15,GANC,WDR7,COA1,FNBP4,GTF2A1,KMT2D,SYNRG,BOD1L1,RSRP1,RAB33B,TMF1,SSH2,EYA3,MLLT10,CHD2,MED23,NVL,CLEC2D,ATG14,GOLGB1,PWWP2A,NBPF15,PTPN22,METTL14,ERN1,OTUD4,ANKLE2,ZNF720,SLC39A10,STIL,MIER3,TMPO,HERC1,LINS1,ANKRD26,GSAP,SCAF11,DOCK8,DDX11,PUS10,BCL2L11,GPBP1,MRE11,ARHGAP32,GK5,NDUFAF7,RBM6,TRMT13,HERC3,GDAP2,RAD50,PDS5B,TP53BP1,CDK19,ZFHX3,EDEM3,ARID4A,SBF2,RNF115,ATP6V0A2,LRBA,VPS54,CCDC142,SMAD4,PAXIP1,TTC37,VCPIP1,SYNE2,NOM1,CBX5,KIF3A,EPM2AIP1,PGM3,SYNGAP1,XAF1,CHD1,WDR27,HECTD4,ZEB2,KHDC4,GNPTAB,TPR,EP400P1,NOC3L,PNISR,GEN1,SFPQ,CEPT1,USP45,CARD8,DMXL2,ATAD2B,ZNF10,GOPC,EVI5,NCOA2,FAM126B,ATAT1,MED17,DNMT1,INVS,PREPL,PLCG1,ESCO1,RALGAPA1,CEP120,FGD6,KLF12,TMX3,ANGEL2,WDR11,ROCK1,ADPGK,MYSM1,N4BP2,FAM214A,MED13L,CEP57L1,CEP250,ARID2,FBXO41,ASPM,SMG6,VPS13B,NEK4,MALT1,TAF1D,CEP95,NUP153,SPIN3,TASP1,GABPA,SLX4IP,HEATR1,ZFAND4,PPP1R12A,GTF3C3,PBRM1,TET3,EFCAB7,PRR14L,RNPC3,BARD1,ANKRD10,TENT4A,PPP4R3B,UBXN7,LRCH3,GABBR1,CNOT4,SON,DOP1A,MSL3,KANSL3,DHX57,KMT2C,CCSAP,SIKE1,DENND4A,RLIM,MPHOSPH9,CCNT2,PTCD3,ZFP91,CHD6,ZNF91,AGO2,BRWD1,CNOT1,NIN,DDI2,RBM26,TRAPPC11,XRCC2,NAPEPLD,MARCHF1,SPATA6,RBM25,FBXW7,RO60,TBCK,BBS10,MLH3,SP4,KANSL1L,POLI,UBR5,LNPEP,PRPF39,RESF1,ITSN2,ERMARD,KIAA0753,WDFY3,ENTPD4,SMC5,SRRM2,HEATR5B,BTN2A1,EPC1,LCOR,DDHD1,MAP4K5,SLC4A7,CMTR2,GORAB,FBXL20,MAP3K7,CEP44,CENPC,RBM41,ARGLU1,WBP11,POLQ,TUBGCP4,CCNL1,TLK1,USP37,ANKRA2,C2orf49,POLK,NCOR1,CELF1,TMEM161B,CDC40,EPG5,RBM45,NFXL1,PRDM2,WRN,RBL1,SPATA5,FAM149B1,R3HDM2,VEZT,PMS1,WDR36,TIA1,ZNF83,PPP4R3A,MOSMO,KANSL1,NSUN6,RFX3,ZNF8,DNMT3A,HAUS6,SYNJ1,UHRF1BP1L,ERCC3,KDM2B,RBBP5,SZT2,POLE,FAM13B,C12orf4,DDX5,USP48,STX17,CYLD,PARP8,HELZ,LRRK1,BRCA1,STK4,ELF2,LYST,CRAMP1,LUC7L,SPOPL,CCND2,CENPI,PNN,BRD8,CCAR1,GAPVD1,SACM1L,UBE2V1,CENPJ,CASP8,SNX13,TRA2A,MAPKAPK5,KMT2A,TPP2,REV1,NEURL4,BROX,PHOSPHO2,NR2C1,APBB3,NRIP2,DYNC1LI2,APPL1,SOS1,RUFY2,JMY,RBM33,AVL9,NOL8,ZDHHC21,CFAP44,AGAP6,GABPB2,ATXN7L1,TRIM66,RBM39,ODF2L,GPATCH8,TNPO1,PGS1,MSL2,STAG1,ZCCHC8,NRF1,FAM120B,GXYLT1,KAT7,WASHC4,ZXDC,INTS3,FNDC3A,PDS5A,PIGL,ZC3H7A,CSAD,ATRX,BRIP1,MAP3K2,GPATCH2,RBM28,DCAF8,IKZF5,C2CD5,ABCA5,PHYKPL,SF3B1,NHLRC2,ZBTB5,RUFY3,BCLAF1,ZFYVE26,OGA,ZFP69,MAP3K4,RASAL2,PAN3,CEP350,MED28,RNF168,KMT2E,CLASP2,DCAF16,ACVR2B,SUPT7L,SHTN1,MORC3,PSME4,RICTOR,OSGEPL1,PEX1,CHORDC1,S100PBP,SCLT1,USP24,KAT6B,APAF1,TOGARAM1,FAM76B,POGZ,BRWD3,AKAP10,RBMX,DTWD1,EXOG,PCNT,TAF1C,ADNP,MAP3K12,SCAI,IKZF4,TEFM,TCEANC2,ARID1B,FUBP1,NF1,TRIM33,EZH1,LRP6,MRNIP,THAP6,SS18L1,DHX15,DDX17,ABL2,SENP7,RSBN1L,FMR1,RAD52,CEP43,EPB41,DYRK1A,ASXL2,MARF1,CTDSPL2,INO80,CEP290,TRIP11,NEK1,TRPM7,MCM8,SMC6,TRAPPC8,WSB1,GPALPP1,DUSP16,MKLN1,PHIP,C12orf76,PFAS,ALS2,ELK4,NSD2,TRIM52,NCBP3,DEPDC5,USF3,FBXO11,ZC3HAV1L,CCDC93,TTC13,STK36,MTX3,ZMAT1,GOLGA8B,CSGALNACT2,HP1BP3,ALPK1,ACP6,TUT7,STRADA,VPS13C,ZFX,NLRC3,CBWD2,CDC14A,DIDO1,GOLGA8A,TEX10,APPBP2,TBC1D12,FKTN,POC1B,CNOT2,CREBBP,PIKFYVE,AARSD1,DUSP28,PUM2,TYW5,RBM5,USP3,DHX36,NKTR,CEP162,RAD18,FARP2,ZNF17,TTLL3,CRBN,SLC30A9,RNF169,TUBE1,CEP170,ZNF84,BAZ2B,CCP110,BICRAL,WDR33,KIF15,WDR26,NRIP1,TRA2B,FRYL,PIAS2,JMJD1C,ASXL1,TSC1,DENND4B,NSUN3,SPG11,TEP1,MAN2C1,TAB3,USPL1,PRPF4B,TET2,ATF2

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-180M15.7

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

NR1H2,RNH1,CLTB,SNU13

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-180M15.7

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000275560	ENSG00000013441	CLK1	BRCA,CESC,COAD,ESCA,KIRC,LUAD,LUSC,READ,STAD,THYM	KIRC
ENSG00000275560	ENSG00000051825	MPHOSPH9	BRCA,CESC,COAD,ESCA,KIRC,LUAD,LUSC,READ,STAD,THYM	LUSC
ENSG00000275560	ENSG00000062716	VMP1	BRCA,COAD,KIRC,LAML,LUAD,READ	KIRC,LUAD
ENSG00000275560	ENSG00000069493	CLEC2D	BRCA,ESCA,KIRC,LUAD,LUSC,STAD,THYM	KIRC
ENSG00000275560	ENSG00000109046	WSB1	BRCA,CESC,COAD,ESCA,KIRC,LUAD,READ,THYM	KIRC
ENSG00000275560	ENSG00000111300	NAA25	BRCA,COAD,ESCA,KIRC,LUAD,LUSC,READ,STAD,THYM	COAD
ENSG00000275560	ENSG00000113240	CLK4	BRCA,COAD,ESCA,KIRC,READ,STAD,TGCT,THYM	KIRC
ENSG00000275560	ENSG00000116191	RALGPS2	BRCA,COAD,LUAD,LUSC,STAD,THYM	BRCA,LUAD,LUSC
ENSG00000275560	ENSG00000117616	RSRP1	BRCA,CESC,COAD,ESCA,KIRC,LUAD,LUSC,READ,STAD,TGCT,THYM	KIRC
ENSG00000275560	ENSG00000132680	KHDC4	BRCA,CESC,COAD,ESCA,KIRC,LUAD,LUSC,READ,STAD,THYM	LUAD,LUSC
ENSG00000275560	ENSG00000132953	XPO4	BRCA,COAD,ESCA,KIRC,LUAD,STAD,THYM	COAD
ENSG00000275560	ENSG00000135905	DOCK10	BRCA,ESCA,KIRC,LUAD,STAD,THYM	KIRC
ENSG00000275560	ENSG00000139625	MAP3K12	BRCA,ESCA,KIRC,LUAD,THYM	KIRC
ENSG00000275560	ENSG00000139631	CSAD	BRCA,CESC,ESCA,KIRC,LAML,LUSC,READ	KIRC
ENSG00000275560	ENSG00000145416	MARCHF1	BRCA,KIRC,LAML,LUAD,STAD,THYM	KIRC
ENSG00000275560	ENSG00000146858	ZC3HAV1L	BRCA,CESC,COAD,KIRC,THYM	COAD,KIRC
ENSG00000275560	ENSG00000152520	PAN3	BRCA,COAD,ESCA,KIRC,LUAD,LUSC,STAD,THYM	COAD
ENSG00000275560	ENSG00000161010	MRNIP	BRCA,CESC,COAD,ESCA,KIRC,READ,STAD,TGCT	KIRC
ENSG00000275560	ENSG00000161791	FMNL3	BRCA,CESC,COAD,KIRC,LUAD,THYM	KIRC
ENSG00000275560	ENSG00000161960	EIF4A1	BRCA,CESC,COAD,KIRC,LUAD,LUSC,READ,STAD,THYM	KIRC
ENSG00000275560	ENSG00000162836	ACP6	BRCA,COAD,KIRC,LUAD,READ	LUAD
ENSG00000275560	ENSG00000167615	LENG8	BRCA,CESC,ESCA,KIRC,LUSC,READ,STAD,TGCT,THYM	KIRC
ENSG00000275560	ENSG00000167984	NLRC3	BRCA,ESCA,KIRC,LUAD,STAD,THYM	KIRC
ENSG00000275560	ENSG00000175309	PHYKPL	BRCA,CESC,COAD,KIRC,STAD,THYM	KIRC
ENSG00000275560	ENSG00000175455	CCDC14	BRCA,CESC,COAD,ESCA,KIRC,LUAD,LUSC,READ,STAD,THYM	KIRC
ENSG00000275560	ENSG00000184445	KNTC1	BRCA,CESC,COAD,ESCA,KIRC,LUAD,LUSC,READ,STAD,THYM	BRCA,COAD,KIRC,LUAD,LUSC
ENSG00000275560	ENSG00000184465	WDR27	BRCA,CESC,COAD,ESCA,KIRC,READ,STAD,THYM	COAD,KIRC
ENSG00000275560	ENSG00000185158	LRRC37B	BRCA,ESCA,KIRC,LUAD,LUSC,STAD,THYM	KIRC
ENSG00000275560	ENSG00000186088	GSAP	BRCA,COAD,KIRC,LAML,STAD	KIRC
ENSG00000275560	ENSG00000186166	CENATAC	BRCA,COAD,ESCA,KIRC,LUAD,LUSC,READ,STAD	KIRC
ENSG00000275560	ENSG00000204149	AGAP6	BRCA,CESC,COAD,ESCA,KIRC,READ,STAD,THYM	KIRC
ENSG00000275560	ENSG00000204271	SPIN3	BRCA,CESC,COAD,KIRC,LUAD,LUSC,READ,TGCT	COAD
ENSG00000275560	ENSG00000204681	GABBR1	BRCA,COAD,KIRC,READ,THYM	KIRC
ENSG00000275560	ENSG00000213066	CEP43	BRCA,COAD,ESCA,KIRC,READ,THYM	KIRC
ENSG00000275560	ENSG00000214021	TTLL3	BRCA,COAD,ESCA,KIRC,LUAD,LUSC,READ,STAD,TGCT,THYM	KIRC
ENSG00000275560	ENSG00000215252	GOLGA8B	BRCA,COAD,KIRC,LUAD,LUSC,READ	COAD,KIRC
ENSG00000275560	ENSG00000051341	POLQ	CESC,COAD,LUSC,READ,STAD,THYM	COAD,LUSC
ENSG00000275560	ENSG00000102384	CENPI	CESC,COAD,LUAD,STAD,THYM	COAD,LUAD
ENSG00000275560	ENSG00000103995	CEP152	CESC,COAD,ESCA,LUSC,STAD,THYM	LUSC
ENSG00000275560	ENSG00000109685	NSD2	CESC,COAD,KIRC,LUAD,LUSC,STAD,THYM	LUSC
ENSG00000275560	ENSG00000113108	APBB3	CESC,ESCA,KIRC,LAML,STAD	KIRC
ENSG00000275560	ENSG00000119772	DNMT3A	CESC,COAD,KIRC,LUSC,READ,THYM	LUSC
ENSG00000275560	ENSG00000119969	HELLS	CESC,COAD,ESCA,READ,STAD,THYM	COAD
ENSG00000275560	ENSG00000120802	TMPO	CESC,ESCA,KIRC,LUSC,READ,STAD,THYM	LUSC
ENSG00000275560	ENSG00000123473	STIL	CESC,COAD,ESCA,LUAD,STAD,THYM	COAD,LUAD
ENSG00000275560	ENSG00000125885	MCM8	CESC,COAD,ESCA,LUSC,THYM	COAD,LUSC
ENSG00000275560	ENSG00000126001	CEP250	CESC,KIRC,LUSC,READ,THYM	LUSC
ENSG00000275560	ENSG00000135637	CCDC142	CESC,ESCA,KIRC,LUSC,READ,THYM	KIRC
ENSG00000275560	ENSG00000136492	BRIP1	CESC,COAD,ESCA,LUAD,LUSC,READ,STAD,THYM	COAD,LUAD,LUSC
ENSG00000275560	ENSG00000137343	ATAT1	CESC,COAD,KIRC,READ,STAD	COAD
ENSG00000275560	ENSG00000147874	HAUS6	CESC,COAD,ESCA,KIRC,READ,STAD,THYM	COAD
ENSG00000275560	ENSG00000151849	CENPJ	CESC,COAD,KIRC,LUAD,LUSC,READ,STAD,THYM	COAD,LUSC
ENSG00000275560	ENSG00000156876	SASS6	CESC,COAD,KIRC,LUAD,LUSC,READ,STAD,THYM	LUAD,LUSC
ENSG00000275560	ENSG00000162769	FLVCR1	CESC,COAD,KIRC,LUAD,READ	LUAD
ENSG00000275560	ENSG00000163013	FBXO41	CESC,LUSC,READ,STAD,THYM	LUSC
ENSG00000275560	ENSG00000163808	KIF15	CESC,ESCA,LUSC,STAD,THYM	LUSC
ENSG00000275560	ENSG00000166881	NEMP1	CESC,COAD,ESCA,KIRC,LUAD,LUSC,READ,THYM	LUSC
ENSG00000275560	ENSG00000177084	POLE	CESC,ESCA,KIRC,LUSC,READ,STAD	LUSC
ENSG00000275560	ENSG00000187741	FANCA	CESC,ESCA,LUSC,READ,STAD,THYM	LUSC
ENSG00000275560	ENSG00000196584	XRCC2	CESC,COAD,READ,STAD,THYM	COAD
ENSG00000275560	ENSG00000266338	NBPF15	CESC,COAD,KIRC,LUAD,READ,STAD,THYM	KIRC
ENSG00000275560	ENSG00000066279	ASPM	COAD,ESCA,LUAD,READ,STAD,THYM	COAD,LUAD
ENSG00000275560	ENSG00000066294	CD84	COAD,KIRC,LUAD,STAD,THYM	KIRC
ENSG00000275560	ENSG00000070950	RAD18	COAD,KIRC,LUAD,READ,THYM	COAD
ENSG00000275560	ENSG00000080839	RBL1	COAD,KIRC,LUAD,LUSC,READ,STAD,THYM	COAD,LUSC
ENSG00000275560	ENSG00000107099	DOCK8	COAD,ESCA,KIRC,STAD,THYM	KIRC
ENSG00000275560	ENSG00000118971	CCND2	COAD,KIRC,LUAD,READ,STAD	KIRC
ENSG00000275560	ENSG00000119285	HEATR1	COAD,KIRC,LUAD,READ,STAD,THYM	COAD,LUAD
ENSG00000275560	ENSG00000123219	CENPK	COAD,LUAD,LUSC,STAD,THYM	COAD,LUAD,LUSC
ENSG00000275560	ENSG00000125772	GPCPD1	COAD,ESCA,KIRC,LAML,LUAD	COAD
ENSG00000275560	ENSG00000132530	XAF1	COAD,KIRC,LUAD,STAD,TGCT,THYM	KIRC
ENSG00000275560	ENSG00000134242	PTPN22	COAD,ESCA,KIRC,LUAD,THYM	KIRC
ENSG00000275560	ENSG00000136891	TEX10	COAD,KIRC,READ,STAD,THYM	COAD
ENSG00000275560	ENSG00000139496	NUP58	COAD,ESCA,KIRC,LUAD,READ,STAD,THYM	COAD
ENSG00000275560	ENSG00000143498	TAF1A	COAD,KIRC,LUAD,READ,STAD,THYM	COAD
ENSG00000275560	ENSG00000154237	LRRK1	COAD,ESCA,KIRC,LUAD,STAD	KIRC
ENSG00000275560	ENSG00000154429	CCSAP	COAD,ESCA,KIRC,LUAD,READ,THYM	COAD
ENSG00000275560	ENSG00000166012	TAF1D	COAD,KIRC,LUAD,READ,STAD,THYM	COAD,KIRC,LUAD
ENSG00000275560	ENSG00000173145	NOC3L	COAD,ESCA,KIRC,READ,STAD,THYM	COAD
ENSG00000275560	ENSG00000175265	GOLGA8A	COAD,ESCA,KIRC,LUAD,LUSC,READ,STAD	COAD,KIRC,LUSC
ENSG00000275560	ENSG00000178295	GEN1	COAD,ESCA,LUAD,LUSC,READ,STAD,THYM	LUAD,LUSC
ENSG00000275560	ENSG00000196950	SLC39A10	COAD,ESCA,LUAD,READ,THYM	COAD
ENSG00000275560	ENSG00000205268	PDE7A	COAD,ESCA,KIRC,READ,STAD,THYM	KIRC
ENSG00000275560	ENSG00000256525	POLG2	COAD,ESCA,KIRC,LUAD,LUSC,READ,STAD,THYM	KIRC,LUAD
ENSG00000275560	ENSG00000138834	MAPK8IP3	ESCA,KIRC,LUSC,STAD,THYM	KIRC
ENSG00000275560	ENSG00000139636	LMBR1L	ESCA,KIRC,LUSC,STAD,THYM	KIRC

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000275560.1	ENST00000614874.1	32	140	238

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential