Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000275441

Summary for RP11-666O2.2

Gene summary

Gene information	Ensembl ID	ENSG00000275441
	Gene symbol	RP11-666O2.2
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

Top

Structure and expression level for RP11-666O2.2

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000275441	3.631193e+01	2.019812e+00	5.116209e-01	3.947869e+00	7.880000e-05	4.021530e-04	UP	GBM

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

Top

lncRNA-Protein interaction for RP11-666O2.2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000149929	HIRIP3	8.62	93.6986	Q9BW71	Epi	NA
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000154832	CXXC1	72.28	91.8674	Q9P0U4	TF,Epi	NA
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000105619	TFPT	10.64	91.2713	P0C1Z6	Epi	NA
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000280789	PAGR1	7.85	91.4391	Q9BTK6	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000167967	E4F1	117.65	91.1515	Q66K89	TF	NA
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000130254	SAFB2	114.21	94.021	Q14151	TF,RBP	NA
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000154832	CXXC1	72.28	92.0656	Q9P0U4	TF,Epi	NA
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000169740	ZNF32	15.99	90.4119	P17041	TF	NA
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000065029	ZNF76	14.83	91.2391	P36508	TF	NA
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000105717	PBX4	14.01	90.7988	Q9BYU1	TF	NA
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000102878	HSF4	5.32	91.2462	Q9ULV5	TF	NA
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000126456	IRF3	2.27	91.8665	Q14653	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000013573	DDX11	122.8	93.1423	Q96FC9	RBP	NA
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000130254	SAFB2	114.21	93.8798	Q14151	TF,RBP	NA
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000004534	RBM6	112.0	93.3369	P78332	RBP	NA
ENSG00000275441	ENST00000613454	RP11-666O2.2	ENSG00000204356	NELFE	8.26	91.2646	P18615	RBP	NA

Top

lncRNA-DNA interaction for RP11-666O2.2

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

MAD2L2,ARL16,UXT,SLIRP,TCEA2,NDUFS3,KRT10,MCRS1,ABHD17A,TMEM234,C12orf57,NAPRT,CIRBP,PET100,MZF1,CMC2,ATP5MG,WDR83OS,SHARPIN,DPM2,QPCTL,MAPK8IP3,TMUB1,PPP2R3B,BCS1L,HINT2,CTU1,ACD,XAB2,TIMM17B,B3GAT3,MRPS12,NDUFA11,ULK3,METTL5,CENATAC,NPEPL1,SNRPA,SMUG1,WDR54,SAFB2,KCTD13,DTYMK,TRAPPC2L,FAAP20,C6orf136,COMMD7,COA3,SURF2,NDUFA3,PPIH,RECQL4,COA4,CDK2AP2,COG4,SVBP,GKAP1,SPRN,MICOS13,TAZ,SUGP1,SPG7,NAA80,SIGIRR,GINS2,FAM104B,NDUFB2,UQCR11,USE1,TMEM208,RAB4B,CLK2,UQCC2,TARBP2,ILKAP,VKORC1,CISD3,MPLKIP,DHX34,MST1,RING1,PSENEN,SSU72,CHKB,METTL17,TRIM11,CBY1,ABHD14B,WDR83,OSGEP,USF1,ITGB3BP,GABPB1,DHPS,MPST,RPAIN,HSPE1,MRPS11,BABAM1,ACYP1,MRPS34,ENO3,TOMM40,SLC25A29,RPS28,PIH1D1,CTU2,CDKN2AIPNL,CFAP298,DDX49,C19orf48,PFDN6,RBM42,ATP5MK,C3orf62,CSNK2B,YJU2,APBA3,NOC4L,ALKBH2,RPL35,NDUFA2,CLPP,DHODH,MIIP,TMEM160,LPAR2,RPP38,FDX2,C18orf21,MCAT,FGFBP3,C12orf73,DDX51,AGER,FUZ,ESS2,PSMB3,MTLN,SYMPK,GCAT,TSEN54,FAM229B,VARS2,ZNF593,ATG4B,MRPL57,PAFAH1B3,LMNTD2,C2orf76,BORCS8,PFDN5,FAM229A,CCS,COX6C,SGTA,CCDC159,DUS3L,CCDC167,HMGN3,FAM193B,SLC25A39,NDUFB1,PNKP,SLC25A28,CZIB,MPG,KLHL17,ARHGAP33,ELOF1,HEXD,COA6,SDHAF2,TUFM,IDH3B,ANAPC11,SCNN1D,CCDC12,ILVBL,PTRHD1,UQCRHL,DECR2,COX7A2,ERCC5,DDT,MCRIP1,PCYT2,TRIR,MRPL52,FAAP100,SCNM1,PRADC1,MMAB,RTRAF,SLC27A5,TEDC2,GLI4,DNAJC4,MRPL55,EMG1,RBBP8NL,NMRAL1,NDUFB8,SH2B1,COX6B1,RANBP3,SNRNP25,C1orf159,NDUFS8,DDX56,FAM98C,IP6K2,PPOX,SWI5,WDR53,NDUFB11,NPRL3,ATP6V0B,C19orf53,GUK1,EIF2B4,MRPL28,TIMM44,C20orf96,HSCB,ARFGAP1,MIX23,CAPN10,PFDN2,ACYP2,RPL37A,LSM3,SURF1,NUBP2,TMEM175,GNPTG,LCMT1,NUTF2,C6orf52,ACBD6,INTS11,IZUMO4,GDPD3,MRPL24,STYXL1,SMPD2,NAA38,POLR3K,PIDD1,NME4,JTB,TBL3,TMEM251,CCDC137,EMD,NAA10,FBXO44,NELFE,EXD3,METTL23,NFKBID,TBC1D10B,PCED1A,MVB12A,C11orf98,ELP5,TBCB,PGP,CHMP2A,SYCE1L,MRPS15,DYNLT2,BRF1,PRR7,THOC6,POLRMT,PQBP1,LENG1,TMEM186,ATF4,PEX11G,CCHCR1,ZFYVE19,PRMT7,PTRH2,SGF29,NEK8,NXT1,MBD3,POLR2L,SF3A2,SERF2,RPS10,CRACR2B,VPS28,FIZ1,TRPT1,MRPL36,VPS4A,HEMK1,CD2BP2,RABEP2,PTOV1,PCSK4,ALKBH4,DMAC1,CDC37,NDUFA12,DDX11,NDUFAF5,FBXL8,SPC24,AP4M1,KRTCAP2,IDUA,TMEM134,POP5,BTBD6,ORAI3,NTHL1,MYL5,METTL26,UCKL1,SCAND1,COX14,NDUFA6,UBXN11,HSPBP1,EME2,PTCD1,NDUFAF2,PPCDC,ISOC2,DCAF15,CROCC,RSAD1,USF2,NCAPH2,RP9,RALY,ACAP3,SPAG7,SRA1,NOSIP,MVD,ENKD1,FAM3A,ATP5IF1,CPTP,PSME2,BLOC1S1,ATAT1,DUT,NDUFS6,NUDT1,PYM1,ATP5F1E,ZBTB8OS,TRMU,CCDC107,CTBP1,MRPL34,NFKBIB,ATXN7L2,SEM1,ARF5,CHTF18,CDPF1,MSTO1,UBE2J2,NAT14,C1orf35,LSM10,TIMM13,MTIF3,CDK5RAP1,C7orf26,NDUFA7,FOXRED1,MARCHF9,BUD23,NPRL2,MRPL2,KLHDC4,CCNL2,GFER,HHLA3,MIEN1,LSM5,DDTL,SGSM3,UQCRH,TP53I13,SEC61B,COQ4,COPS9,ZMAT5,STX10,KAT2A,ECI1,ARMC5,UBALD1,ACBD4,PMF1-BGLAP,TMEM223,PLA2G6,TMEM86B,RNPS1,COMTD1,ENTR1,RHPN1,SLC25A10,ENDOV,COPE,FLAD1,DPY30,PPIE,MRPL11,FAM50A,ITPA,BAD,ELP6,COX7B,ALKBH7,TMEM258,ERMARD,MRPL22,GEMIN7,GEMIN6,MIB2,MZT2B,HDAC10,HAUS7,HEXIM2,KLC4,SCRN2,HSF4,ANKS3,NOXA1,YJEFN3,GON7,DDA1,UCK1,SMDT1,PIGQ,SEC61G,ANKRD54,TXNRD2,RASSF7,TAF10,KRI1,RNF25,COX4I1,TMEM60,NFKBIL1,HSPBAP1,ECSIT,YAE1,SAC3D1,DYRK4,CENPS,NR2C2AP,PSMG4,PBX4,TIA1,CIAO2B,MCRIP2,IFI27L1,BRAT1,PELP1,MRPL27,PSMG3,MYL6B,UQCR10,C19orf25,FAM234A,MYG1,KPTN,CSKMT,ZMYND19,TLE5,NAT9,CPNE1,ABHD14A,LUC7L,LSM2,TRMT61A,COA5,MAP2K7,PPAN,C14orf93,DPH7,RNF126,NSMCE4A,ATP5F1D,ATP5PF,MRPL43,APRT,CEP131,RUVBL2,CYTH2,C8orf76,NOP53,SMIM19,FKBP2,IMMP1L,HSD17B10,SSR2,NDUFB10,AGAP6,WRAP73,BOLA3,TAF6L,UBA52,NUDT16L1,C15orf61,MRPS26,HDDC3,IRF3,TMEM161A,GPANK1,IMP3,NDUFA13,CHCHD5,C7orf50,C1orf122,DCTN3,C16orf86,RRNAD1,NDUFAB1,GADD45GIP1,SNRPD2,ZSWIM7,SNF8,CSAD,KIAA0895L,DDX39A,ATAD3B,HAUS8,MUTYH,BANF1,BCL7C,TMEM259,COMMD5,LIN37,GSTZ1,HAX1,IFT27,RECQL5,ZNHIT1,AKT1S1,PHKG2,NARF,PMF1,SARS2,POLR2J,PPP1R16A,LRRC75B,SS18L2,SWSAP1,RFXANK,NT5C3B,CLN3,POLR2I,CENPT,ZGLP1,CFAP410,ANAPC7,GTPBP3,LSM4,SNRPB,APOM,PSMA7,C21orf58,TAF1C,UFD1,COX17,ATP5MJ,SAMD1,AAAS,RABAC1,UBL5,TXNDC17,RPS11,CXXC1,PLEKHJ1,C8orf82,PARD6A,TXNL4A,NDUFB7,ING4,HAUS5,TBC1D7,THYN1,PGLS,PRAF2,TELO2,FBXL6,GTF2A2,TEDC1,AUP1,POLL,WASHC1,TIGD1,RBM10,GPS2,PEMT,NDUFC1,RPL36A,COA8,THAP3,NOL12,CLASRP,OAZ1,STAC3,TTC32,NDUFA8,SPATA2L,GOLGA8B,SPATA33,SMG9,TIMM29,TMA7,EMC9,PAM16,MACROD1,YBEY,SOX12,TPRKB,NEDD8,DUSP28,BOLA1,PXMP2,TSR3,RPS19BP1,SMIM4,YPEL3,RNASEH2C,VPS16,TMEM11,NSMCE1,ATP5MC2,TMEM238,RNF5,NDUFV3,DGCR6L,REX1BD,TFPT,SH3GLB2,HSD11B1L,FASTK,CYHR1,SIRT6,DXO,HSPB11,ANKRD13D,MRPL38,EMC8,MRPL54,FAM174C

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

SGSM3,DPH7,YDJC,TBL3,VPS4A,MSTO1,GUK1,METTL12,DHPS,PEX11G,C11orf98,PGLS,ECSIT,GTF2A2,LPAR2,RNF113A,PARK7,PQBP1,HEMK1,ELOF1,DYRK4,C7orf50,RBM10,ITPA,COX6A1,ALKBH4,NDUFB1,SHFM1,TMEM160,TIMM17B,LUC7L,MAPK8IP3,PSMD4,MIIP,EMC8,NDUFA1,CDC34,MZF1,HINT2,LSM2,BANF1,AURKAIP1,CXXC1,QTRT1,RPSA,MYL5,C14orf2,CPNE1,HSCB,NDUFB11,RBM42,PPCDC,NT5M,H2AFX,NT5C,KPTN,PBX4,SAT2,NDUFS5,GGA1,FAM234A,MACROD1,HIST3H2A,THOC6,SYMPK,SCNM1,RPL35,CYTH2,UQCC2,FGFBP3,NR2C2AP,PTCD1,WDR13,HCFC1R1,NIT2,ARIH2OS,RBM6,C16orf91,TRIM11,SLC25A10,ATP5I,AP4B1,NMRAL1,UBA52

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

Only predicted by TDF

KIDINS220,CLTC,TANGO6,RAB3GAP1,KPNA6,PLBD2,CSNK1A1,SLC25A24,MAML2,ELF1

Exist in public source

Top

lncRNA-RNA interaction for RP11-666O2.2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CNOT1,SMAD1,ATP2A2,PRKAR2A,TBC1D2B,MACF1,KIF2A,NBR1,CTNNB1,SOS2,ERLIN1,CSNK1A1,USP9X,ROCK2,VPS4B,MYH9,DYNC1H1,BBX,CAB39,HUWE1,PDLIM5,KIF13B,UBE4B,BECN1,NDST1,TP53BP1,DUSP3,ELF1,ZNF106,SEC24D,PPP1R12A,PCDHGC3,CYLD,IQGAP1,KIDINS220,DYNC1I2,RAB3GAP1,WDR7,PICALM,GIGYF2,PTPN11,CLIP1,ACTN1,TECPR2,STAT3,KIAA0100,PLEKHB2,SMG6,FBXO11,EIF4G1,SEC23A,KLHL5,POLR2A,NCOA2,BCL9L,UBE3C,MPRIP,ACTR2,CAP1,SEC24B,CLTC,NDUFS1,TRIP12

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000275441	ENST00000613454	exon_skip_382458	chr3:38131595-38131638	-8.60	-0.2529	ACAA1	ENST00000333167	Frame-shift
ENSG00000275441	ENST00000613454	exon_skip_445390	chr5:150403120-150403312	-20.27	-0.1291	CD74	ENST00000009530	In-frame
ENSG00000275441	ENST00000613454	exon_skip_470226	chr7:103307595-103307708	-11.86	-0.1275	PMPCB	ENST00000249269	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for RP11-666O2.2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000275441	ENSG00000064490	RFXANK	ACC,BLCA,GBM,KIRP,LAML,LGG,PRAD,THYM	GBM
ENSG00000275441	ENSG00000099385	BCL7C	ACC,BLCA,CESC,GBM,KIRP,LAML,LGG,OV,THYM,UCEC,UCS	GBM
ENSG00000275441	ENSG00000104915	STX10	ACC,BLCA,DLBC,GBM,KIRP,LAML,LGG,PRAD,THCA,THYM,UCEC,UCS	GBM
ENSG00000275441	ENSG00000106803	SEC61B	ACC,GBM,LAML,LGG,TGCT,THCA,THYM,UCS	GBM
ENSG00000275441	ENSG00000125656	CLPP	ACC,BLCA,GBM,LAML,LGG,PRAD,THYM	GBM
ENSG00000275441	ENSG00000167272	POP5	ACC,BLCA,CESC,GBM,KIRP,LAML,LGG,PRAD,TGCT,THCA,THYM,UCEC	GBM
ENSG00000275441	ENSG00000168273	SMIM4	ACC,BLCA,CESC,GBM,KIRP,LGG,OV,PRAD,THCA,THYM,UCEC	GBM
ENSG00000275441	ENSG00000184162	NR2C2AP	ACC,BLCA,GBM,KIRP,LAML,LGG,PRAD,TGCT,THYM,UCEC	GBM
ENSG00000275441	ENSG00000198258	UBL5	ACC,BLCA,GBM,KIRP,LAML,LGG,PRAD,TGCT,THCA,THYM	GBM
ENSG00000275441	ENSG00000198931	APRT	ACC,BLCA,GBM,LAML,LGG,PRAD,THCA,THYM,UCEC,UCS	GBM
ENSG00000275441	ENSG00000204444	APOM	ACC,DLBC,GBM,LAML,LGG,THCA,THYM	GBM
ENSG00000275441	ENSG00000005075	POLR2J	BLCA,GBM,KIRP,LAML,LGG,TGCT,THCA,THYM,UCEC,UCS	GBM
ENSG00000275441	ENSG00000103202	NME4	BLCA,GBM,KIRP,LAML,LGG,THCA,THYM,UCS	GBM
ENSG00000275441	ENSG00000106400	ZNHIT1	BLCA,CESC,GBM,KIRP,LAML,LGG,THCA,THYM,UCEC,UCS	GBM
ENSG00000275441	ENSG00000111678	C12orf57	BLCA,GBM,LAML,LGG,THYM	GBM
ENSG00000275441	ENSG00000123349	PFDN5	BLCA,CESC,GBM,KIRP,LAML,LGG,TGCT,THCA,THYM,UCEC,UCS	GBM
ENSG00000275441	ENSG00000125743	SNRPD2	BLCA,CESC,DLBC,GBM,KIRP,LAML,LGG,PRAD,TGCT,THYM	GBM
ENSG00000275441	ENSG00000132661	NXT1	BLCA,GBM,KIRP,LAML,LGG,OV,THYM,UCS	GBM
ENSG00000275441	ENSG00000134825	TMEM258	BLCA,GBM,KIRP,LAML,LGG,OV,THYM,UCS	GBM
ENSG00000275441	ENSG00000140264	SERF2	BLCA,GBM,KIRP,LAML,LGG,PRAD,TGCT,THCA,THYM,UCEC,UCS	GBM
ENSG00000275441	ENSG00000141971	MVB12A	BLCA,GBM,KIRP,LGG,THCA,THYM,UCEC	GBM
ENSG00000275441	ENSG00000142534	RPS11	BLCA,GBM,LAML,LGG,TGCT,THYM	GBM
ENSG00000275441	ENSG00000149743	TRPT1	BLCA,GBM,KIRP,LAML,LGG,THCA,THYM,UCEC	GBM
ENSG00000275441	ENSG00000175334	BANF1	BLCA,GBM,KIRP,LAML,LGG,OV,TGCT,THYM,UCEC	GBM
ENSG00000275441	ENSG00000181924	COA4	BLCA,GBM,LGG,THCA,THYM	GBM
ENSG00000275441	ENSG00000189046	ALKBH2	BLCA,DLBC,GBM,LAML,LGG,PRAD,TGCT,THCA,UCEC	GBM
ENSG00000275441	ENSG00000233927	RPS28	BLCA,GBM,LAML,LGG,PRAD,TGCT,THYM,UCS	GBM
ENSG00000275441	ENSG00000233954	UQCRHL	BLCA,DLBC,GBM,LAML,LGG,PRAD,THYM	GBM
ENSG00000275441	ENSG00000241127	YAE1	BLCA,GBM,KIRP,LGG,TGCT,THCA,UCS	GBM
ENSG00000275441	ENSG00000241343	RPL36A	BLCA,GBM,LAML,LGG,TGCT,THYM,UCEC	GBM
ENSG00000275441	ENSG00000125611	CHCHD5	CESC,GBM,LAML,LGG,PRAD,THYM,UCS	GBM
ENSG00000275441	ENSG00000153485	TMEM251	CESC,GBM,LGG,THCA,THYM	GBM
ENSG00000275441	ENSG00000161888	SPC24	CESC,GBM,LGG,TGCT,THYM,UCS	GBM
ENSG00000275441	ENSG00000167397	VKORC1	CESC,GBM,KIRP,LAML,LGG,OV,TGCT,THYM,UCS	GBM
ENSG00000275441	ENSG00000168393	DTYMK	CESC,GBM,KIRP,LGG,PRAD,THYM,UCS	GBM
ENSG00000275441	ENSG00000174547	MRPL11	CESC,GBM,LAML,LGG,OV,THYM	GBM
ENSG00000275441	ENSG00000176894	PXMP2	CESC,GBM,LAML,LGG,OV,THCA,THYM	GBM
ENSG00000275441	ENSG00000137434	C6orf52	DLBC,GBM,KIRP,LGG,TGCT,THYM	GBM
ENSG00000275441	ENSG00000171960	PPIH	DLBC,GBM,KIRP,LAML,LGG,PRAD,THYM	GBM
ENSG00000275441	ENSG00000186395	KRT10	DLBC,GBM,KIRP,LAML,LGG,PRAD,THCA,THYM	GBM
ENSG00000275441	ENSG00000198937	CCDC167	DLBC,GBM,LGG,OV,THYM	GBM
ENSG00000275441	ENSG00000072506	HSD17B10	GBM,LAML,LGG,PRAD,THCA,THYM	GBM
ENSG00000275441	ENSG00000100209	HSCB	GBM,KIRP,LGG,PRAD,TGCT	GBM
ENSG00000275441	ENSG00000115541	HSPE1	GBM,LGG,PRAD,TGCT,UCS	GBM
ENSG00000275441	ENSG00000116670	MAD2L2	GBM,LAML,LGG,PRAD,THYM	GBM
ENSG00000275441	ENSG00000123136	DDX39A	GBM,KIRP,LGG,PRAD,TGCT,THCA,THYM	GBM
ENSG00000275441	ENSG00000124614	RPS10	GBM,LAML,LGG,THYM,UCEC	GBM
ENSG00000275441	ENSG00000125835	SNRPB	GBM,LAML,LGG,PRAD,THYM	GBM
ENSG00000275441	ENSG00000126756	UXT	GBM,KIRP,LAML,LGG,THCA,THYM	GBM
ENSG00000275441	ENSG00000129235	TXNDC17	GBM,LAML,LGG,PRAD,THYM	GBM
ENSG00000275441	ENSG00000131153	GINS2	GBM,LGG,OV,THYM,UCS	GBM
ENSG00000275441	ENSG00000136942	RPL35	GBM,KIRP,LAML,LGG,TGCT,THYM,UCEC	GBM
ENSG00000275441	ENSG00000142856	ITGB3BP	GBM,KIRP,LGG,THYM,UCS	GBM
ENSG00000275441	ENSG00000160124	MIX23	GBM,KIRP,LGG,PRAD,THCA,THYM	GBM
ENSG00000275441	ENSG00000163479	SSR2	GBM,LAML,LGG,PRAD,THYM,UCS	GBM
ENSG00000275441	ENSG00000165689	ENTR1	GBM,KIRP,LAML,LGG,THCA	GBM
ENSG00000275441	ENSG00000167747	C19orf48	GBM,LGG,PRAD,TGCT,THCA,THYM	GBM
ENSG00000275441	ENSG00000170270	GON7	GBM,LGG,SARC,TGCT,THCA,THYM	GBM
ENSG00000275441	ENSG00000171421	MRPL36	GBM,LAML,LGG,PRAD,THCA,THYM	GBM
ENSG00000275441	ENSG00000213523	SRA1	GBM,KIRP,LGG,THCA,THYM,UCEC	GBM

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000100359	SGSM3	6	BLCA,DLBC,KIRP,LGG,PRAD,THYM
ENSG00000275441	ENSG00000102878	HSF4	ENSG00000148399	DPH7	7	BLCA,DLBC,KIRP,LAML,LGG,THCA,UCEC
ENSG00000275441	ENSG00000126456	IRF3	ENSG00000148399	DPH7	5	BLCA,KIRP,LAML,LGG,THYM
ENSG00000275441	ENSG00000130254	SAFB2	ENSG00000148399	DPH7	5	ACC,BLCA,KIRP,LGG,TGCT
ENSG00000275441	ENSG00000154832	CXXC1	ENSG00000148399	DPH7	5	BLCA,KIRP,LGG,TGCT,THCA
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000148399	DPH7	9	ACC,BLCA,DLBC,KIRP,LGG,TGCT,THCA,THYM,UCEC
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000161179	YDJC	8	ACC,BLCA,KIRP,PRAD,TGCT,THCA,THYM,UCEC
ENSG00000275441	ENSG00000065029	ZNF76	ENSG00000095059	DHPS	5	BLCA,KIRP,LGG,PRAD,TGCT
ENSG00000275441	ENSG00000102878	HSF4	ENSG00000095059	DHPS	5	KIRP,LAML,LGG,PRAD,THCA
ENSG00000275441	ENSG00000154832	CXXC1	ENSG00000095059	DHPS	5	BLCA,KIRP,LGG,TGCT,THCA
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000095059	DHPS	8	BLCA,KIRP,LGG,PRAD,TGCT,THCA,THYM,UCEC
ENSG00000275441	ENSG00000126456	IRF3	ENSG00000130313	PGLS	5	BLCA,KIRP,LAML,LGG,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000130313	PGLS	5	BLCA,KIRP,LGG,PRAD,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000064547	LPAR2	5	BLCA,KIRP,LGG,TGCT,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000102103	PQBP1	6	BLCA,KIRP,LGG,PRAD,TGCT,THYM
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000102103	PQBP1	5	BLCA,GBM,KIRP,LGG,THYM
ENSG00000275441	ENSG00000102878	HSF4	ENSG00000114735	HEMK1	5	KIRP,LGG,PRAD,THCA,UCEC
ENSG00000275441	ENSG00000126456	IRF3	ENSG00000130165	ELOF1	5	BLCA,KIRP,LAML,LGG,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000130165	ELOF1	6	ACC,KIRP,LGG,PRAD,TGCT,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000160993	ALKBH4	5	BLCA,KIRP,LGG,THCA,THYM
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000160993	ALKBH4	5	BLCA,KIRP,LGG,THCA,THYM
ENSG00000275441	ENSG00000102878	HSF4	ENSG00000183648	NDUFB1	5	BLCA,KIRP,PRAD,THCA,UCEC
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000183648	NDUFB1	7	BLCA,GBM,KIRP,LGG,TGCT,THCA,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000127922	SEM1	6	BLCA,KIRP,LGG,TGCT,THCA,THYM
ENSG00000275441	ENSG00000126456	IRF3	ENSG00000130748	TMEM160	5	BLCA,KIRP,LAML,LGG,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000130748	TMEM160	5	KIRP,LGG,PRAD,TGCT,THYM
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000126768	TIMM17B	5	BLCA,GBM,LGG,THCA,THYM
ENSG00000275441	ENSG00000065029	ZNF76	ENSG00000007392	LUC7L	5	BLCA,KIRP,LGG,PRAD,TGCT
ENSG00000275441	ENSG00000102878	HSF4	ENSG00000007392	LUC7L	8	BLCA,CESC,DLBC,KIRP,LGG,PRAD,THCA,UCEC
ENSG00000275441	ENSG00000130254	SAFB2	ENSG00000007392	LUC7L	5	ACC,BLCA,KIRP,LGG,TGCT
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000007392	LUC7L	11	ACC,BLCA,CESC,DLBC,KIRP,LGG,PRAD,TGCT,THCA,THYM,UCEC
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000138834	MAPK8IP3	5	ACC,CESC,DLBC,KIRP,UCEC
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000159352	PSMD4	5	KIRP,LGG,PRAD,TGCT,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000116691	MIIP	6	BLCA,KIRP,LGG,PRAD,TGCT,THYM
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000125356	NDUFA1	5	BLCA,KIRP,LGG,THCA,THYM
ENSG00000275441	ENSG00000126456	IRF3	ENSG00000099804	CDC34	5	BLCA,KIRP,LAML,LGG,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000099804	CDC34	5	KIRP,LGG,PRAD,TGCT,THYM
ENSG00000275441	ENSG00000102878	HSF4	ENSG00000099326	MZF1	5	BLCA,DLBC,KIRP,PRAD,THCA
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000099326	MZF1	6	BLCA,DLBC,KIRP,LGG,PRAD,THCA
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000137133	HINT2	6	BLCA,GBM,KIRP,LGG,THCA,THYM
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000175334	BANF1	5	BLCA,GBM,KIRP,LGG,THYM
ENSG00000275441	ENSG00000126456	IRF3	ENSG00000175756	AURKAIP1	5	BLCA,KIRP,LAML,LGG,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000175756	AURKAIP1	5	BLCA,KIRP,LGG,PRAD,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000154832	CXXC1	6	BLCA,KIRP,LGG,TGCT,THCA,THYM
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000154832	CXXC1	5	BLCA,KIRP,LGG,THCA,THYM
ENSG00000275441	ENSG00000102878	HSF4	ENSG00000213339	QTRT1	7	BLCA,DLBC,KIRP,LAML,LGG,PRAD,THCA
ENSG00000275441	ENSG00000126456	IRF3	ENSG00000213339	QTRT1	5	BLCA,KIRP,LAML,LGG,THYM
ENSG00000275441	ENSG00000130254	SAFB2	ENSG00000213339	QTRT1	5	ACC,BLCA,KIRP,LGG,TGCT
ENSG00000275441	ENSG00000154832	CXXC1	ENSG00000213339	QTRT1	5	BLCA,KIRP,LGG,TGCT,THCA
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000213339	QTRT1	9	ACC,BLCA,KIRP,LGG,PRAD,TGCT,THCA,THYM,UCEC
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000213339	QTRT1	5	BLCA,KIRP,LGG,THCA,THYM
ENSG00000275441	ENSG00000102878	HSF4	ENSG00000215375	MYL5	7	BLCA,KIRP,LAML,LGG,PRAD,THCA,UCEC
ENSG00000275441	ENSG00000126456	IRF3	ENSG00000215375	MYL5	5	BLCA,KIRP,LAML,LGG,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000215375	MYL5	7	ACC,BLCA,KIRP,LGG,PRAD,THCA,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000138621	PPCDC	7	BLCA,KIRP,LGG,PRAD,TGCT,THCA,THYM
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000138621	PPCDC	5	BLCA,GBM,KIRP,THCA,THYM
ENSG00000275441	ENSG00000126456	IRF3	ENSG00000125458	NT5C	5	BLCA,KIRP,LAML,LGG,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000125458	NT5C	5	BLCA,KIRP,LGG,THCA,THYM
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000125458	NT5C	6	BLCA,GBM,KIRP,LGG,THCA,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000118162	KPTN	6	KIRP,LGG,PRAD,TGCT,THCA,THYM
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000141504	SAT2	5	BLCA,GBM,LGG,THCA,THYM
ENSG00000275441	ENSG00000065029	ZNF76	ENSG00000100083	GGA1	5	BLCA,KIRP,LGG,PRAD,TGCT
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000100083	GGA1	5	BLCA,KIRP,LGG,PRAD,TGCT
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000167930	FAM234A	7	BLCA,CESC,KIRP,LGG,PRAD,TGCT,THYM
ENSG00000275441	ENSG00000102878	HSF4	ENSG00000131652	THOC6	5	BLCA,KIRP,LAML,LGG,PRAD
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000131652	THOC6	8	ACC,BLCA,KIRP,LGG,PRAD,TGCT,THYM,UCEC
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000163156	SCNM1	5	KIRP,LGG,PRAD,TGCT,THYM
ENSG00000275441	ENSG00000126456	IRF3	ENSG00000105443	CYTH2	5	BLCA,KIRP,LAML,LGG,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000105443	CYTH2	5	BLCA,KIRP,LGG,PRAD,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000137288	UQCC2	5	BLCA,LGG,TGCT,THCA,THYM
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000137288	UQCC2	7	BLCA,GBM,KIRP,LGG,TGCT,THCA,THYM
ENSG00000275441	ENSG00000126456	IRF3	ENSG00000184162	NR2C2AP	5	BLCA,KIRP,LAML,LGG,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000184162	NR2C2AP	7	ACC,BLCA,KIRP,LGG,PRAD,TGCT,THYM
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000184162	NR2C2AP	5	BLCA,GBM,KIRP,LGG,THYM
ENSG00000275441	ENSG00000102878	HSF4	ENSG00000101940	WDR13	5	KIRP,LAML,LGG,PRAD,THCA
ENSG00000275441	ENSG00000126456	IRF3	ENSG00000101940	WDR13	5	BLCA,KIRP,LAML,LGG,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000101940	WDR13	6	BLCA,KIRP,LGG,PRAD,THCA,THYM
ENSG00000275441	ENSG00000102878	HSF4	ENSG00000221883	ARIH2OS	6	KIRP,LAML,LGG,PRAD,THCA,UCEC
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000221883	ARIH2OS	5	KIRP,LGG,PRAD,THCA,THYM
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000221883	ARIH2OS	5	GBM,KIRP,LGG,THCA,THYM
ENSG00000275441	ENSG00000065029	ZNF76	ENSG00000004534	RBM6	5	BLCA,KIRP,LGG,PRAD,TGCT
ENSG00000275441	ENSG00000102878	HSF4	ENSG00000004534	RBM6	5	BLCA,DLBC,KIRP,LGG,PRAD
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000004534	RBM6	6	BLCA,DLBC,KIRP,LGG,PRAD,TGCT
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000174109	C16orf91	5	ACC,DLBC,LGG,THCA,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000169020	ATP5ME	6	BLCA,LGG,PRAD,TGCT,THCA,THYM
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000169020	ATP5ME	5	GBM,KIRP,LGG,THCA,THYM
ENSG00000275441	ENSG00000102878	HSF4	ENSG00000134262	AP4B1	5	CESC,DLBC,KIRP,LGG,THCA
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000134262	AP4B1	5	KIRP,LGG,TGCT,THCA,THYM
ENSG00000275441	ENSG00000102878	HSF4	ENSG00000153406	NMRAL1	5	KIRP,LAML,PRAD,THCA,UCEC
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000153406	NMRAL1	8	BLCA,CESC,KIRP,PRAD,TGCT,THCA,THYM,UCEC

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000141367	CLTC	5	GBM,KIRP,LGG,TGCT,THYM
ENSG00000275441	ENSG00000167967	E4F1	ENSG00000113712	CSNK1A1	5	BLCA,KIRP,THCA,THYM,UCEC
ENSG00000275441	ENSG00000169740	ZNF32	ENSG00000113712	CSNK1A1	5	BLCA,LGG,TGCT,THCA,THYM

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000275441	ENST00000613454	CYLD	ENSG00000083799	ENST00000566206	-0.1009	14	-	GBM
ENSG00000275441	ENST00000613454	RAB3GAP1	ENSG00000115839	ENST00000425393	-0.1060	1	-	GBM
ENSG00000275441	ENST00000613454	DUSP3	ENSG00000108861	ENST00000590935	-0.1026	1	-	GBM
ENSG00000275441	ENST00000613454	DUSP3	ENSG00000108861	ENST00000590342	-0.1026	1	-	GBM
ENSG00000275441	ENST00000613454	KIF13B	ENSG00000197892	ENST00000523130	-1.0367	81	-	GBM
ENSG00000275441	ENST00000613454	TP53BP1	ENSG00000067369	ENST00000434561	-0.1441	151	-	GBM
ENSG00000275441	ENST00000613454	TP53BP1	ENSG00000067369	ENST00000467474	-0.1312	277	-	GBM
ENSG00000275441	ENST00000613454	WDR7	ENSG00000091157	ENST00000589935	-0.1728	17	-	GBM
ENSG00000275441	ENST00000613454	WDR7	ENSG00000091157	ENST00000591449	-0.1024	1	-	GBM
ENSG00000275441	ENST00000613454	MACF1	ENSG00000127603	ENST00000484793	-0.1034	1	-	GBM
ENSG00000275441	ENST00000613454	UBE4B	ENSG00000130939	ENST00000488228	-0.1027	3	-	GBM
ENSG00000275441	ENST00000613454	MPRIP	ENSG00000133030	ENST00000429184	-0.2264	42	-	GBM
ENSG00000275441	ENST00000613454	MPRIP	ENSG00000133030	ENST00000578209	-0.1602	1	-	GBM
ENSG00000275441	ENST00000613454	MPRIP	ENSG00000133030	ENST00000462033	-0.4275	253	-	GBM
ENSG00000275441	ENST00000613454	ROCK2	ENSG00000134318	ENST00000401753	-0.1392	65	-	GBM
ENSG00000275441	ENST00000613454	ATP2A2	ENSG00000174437	ENST00000553144	-0.1563	4	-	GBM
ENSG00000275441	ENST00000613454	TECPR2	ENSG00000196663	ENST00000359520	-0.1088	1	-	GBM
ENSG00000275441	ENST00000613454	TECPR2	ENSG00000196663	ENST00000558678	-0.1391	1	-	GBM
ENSG00000275441	ENST00000613454	DYNC1H1	ENSG00000197102	ENST00000360184	-0.1007	253	-	GBM

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000275441.1	ENST00000613454.1	58	43	219

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential