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lncRNA: ENSG00000275234

Summary for CTD-2396E7.11

Gene summary

Gene information	Ensembl ID	ENSG00000275234
	Gene symbol	CTD-2396E7.11
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for CTD-2396E7.11

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000275234	4.554531e+02	1.092436e+00	1.605263e-01	6.805341e+00	1.010000e-11	7.660000e-11	UP	UCEC
ENSG00000275234	3.971713e+02	-1.093930e+00	1.195104e-01	-9.153430e+00	5.520000e-20	3.570000e-19	DOWN	LUSC
ENSG00000275234	6.892940e+02	1.319149e+00	8.482992e-02	1.555052e+01	1.580000e-54	3.870000e-53	UP	BRCA

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000275234	4.193383e-01	4.139775e-03	CHOL	5.535057e-03

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lncRNA-Protein interaction for CTD-2396E7.11

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for CTD-2396E7.11

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

GIPC1,NDUFS3,GPR108,CIRBP,NUDT18,DAPK3,C1orf56,CACFD1,TMUB1,PPP2R3B,TRUB2,XKR8,CHKA,DEGS2,ADAP1,SPINT1,COMMD7,NDUFB2,ECHDC2,COX19,SSU72,OFD1,RPS28,RBM42,CSNK2B,LPAR2,RPP38,C18orf21,SH2D3A,C12orf73,FUZ,HMGN3,NDUFB1,NOL3,RABL6,PDRG1,STAP2,ELOF1,HEXD,IDH3B,CASP6,MYRF,CDK5,SLC22A18,ABHD8,MRPL52,PRADC1,RBBP8NL,NMRAL1,COX6B1,DDX56,FAM98C,PAWR,RTKN,SWI5,INO80C,TMED4,C20orf96,HSCB,ARFGAP1,BICDL2,CTDSP1,ARHGAP27,STYXL1,NPDC1,PIDD1,JTB,GGCT,MAPK15,MVB12A,REEP5,RAB17,MPND,CRACR2B,LIPH,ROGDI,PCSK4,DHRSX,NDUFA12,WBP2,SULT1A1,SCAND1,COX14,HAGH,PPCDC,PPP1R26,SPDEF,ATP5IF1,NDUFS6,PYM1,ARL6IP4,PCBD1,GFER,MIEN1,MED25,ARMC5,MID1IP1,CREB3,UQCRC1,RPL36AL,HMOX2,SLC2A8,BAD,CD151,TMEM258,TXN,ABHD11,HDAC10,RNF208,HSF4,NOXA1,UCK1,RGL3,MICALL2,LRPAP1,HSD3B7,MZT2A,TMPRSS2,JUP,SFXN4,MAGIX,IFI27L1,USP43,BRAT1,UQCR10,MYG1,ZMYND19,RNF215,TLE5,NAT9,LUC7L,F11R,ACY1,LRSAM1,ATP5PF,SDCBP2,CYTH2,NOP53,TLCD1,NDUFB10,GOLM1,PRDX5,TICAM1,SERGEF,KRT7,NDUFAB1,ICA1,HRAS,MPDU1,SAMD10,DEFB1,MFSD10,PMF1,LRRC75B,CFAP410,SURF6,UBL5,FA2H,SYNE4,DGAT1,KLF16,TEDC1,ERP29,WASHC1,DEDD2,FUNDC1,NOL12,MOB2,SPATA2L,ESPN,SPATA33,EMC9,RPS27L,BOLA1,BCDIN3D,GDPGP1,SIL1,ISYNA1,PIGU,TFPT,SH3GLB2,SIRT7,UXT,SLIRP,ZSWIM9,PLLP,PET100,PRR15,CADM4,PEBP1,DYNC2I2,HINT2,B3GAT3,NDUFA11,CENATAC,SMUG1,SAFB2,FUT3,SURF2,SLC37A1,GATD1,MICOS13,SUGP1,UQCR11,USE1,TMEM208,CYSTM1,PSENEN,ANKRD39,PAOX,GPR137,ELMO3,GAR1,TSSC4,PGAP3,PFDN6,HSH2D,C3orf62,YJU2,BAG1,PARL,GGT6,AGER,DYNLT1,SLFN13,ARSD,MLF2,REEP6,SPCS1,SDHAF2,TESC,HDAC8,PMVK,CCDC24,INSR,KIF12,IGSF8,AP1M2,PCYT2,ISCA2,MMAB,MED16,SH2B1,STK11,OVOL2,NDUFB11,C19orf53,MRPL28,PGRMC2,SURF1,LCMT1,ACBD6,ASPHD1,CCDC106,TUBB4B,PRKAB1,EXD3,ELP5,CHMP2A,DNAJC19,MISP,GSTO2,EBP,VPS4A,MVP,FBXL8,POP5,CDIPT,ZDHHC24,MYL5,UBXN6,CKMT1B,PTCD1,COPRS,TRIOBP,SRA1,PTPA,ENKD1,ZDHHC1,CPTP,BLOC1S1,CALML4,MRPL34,ARF5,HKDC1,MARVELD3,RDH13,VAMP8,SMIM22,HDAC11,SLC66A1,BCAT2,WDR45,TMCO4,ENDOV,FANK1,FAM162A,ARHGEF5,MYL6,PRR36,CTSH,TMC4,CHADL,VMAC,RNF25,COX4I1,NFKBIL1,GAL3ST1,ECSIT,CENPS,CCDC96,HOOK2,VSIG10,PELP1,C19orf25,IPO4,RPH3AL,NDUFA5,C4orf19,COQ9,FUT6,ATP5F1D,HEBP2,FKBP2,SDSL,SLC29A2,KDF1,RRNAD1,SLC25A11,CCNO,BANF1,TCEA3,AKT1S1,RECQL5,PHKG2,BUD31,POLR2J,PTPMT1,LSM4,ATP5MJ,ATP6V1F,DDAH1,CAPN15,CNKSR1,C8orf82,PKIB,TMEM129,ZNF57,MRPS33,POLL,SLC25A23,CHCHD10,NDUFC1,FAHD1,SLC22A5,ARMC7,OAZ1,LONP1,SMG9,PAM16,SETD4,SMIM4,C19orf18,CRACDL,PHETA1,SLC35D2,THAP4,FAM110C,PSMB7,WDR83OS,KDELR1,CYB561,ACY3,CRB3,CXXC5,TMEM179B,XAB2,CENPB,EPCAM,SMAGP,CLUH,NPEPL1,TMEM203,FAAP20,COA3,LAMTOR2,PMM1,NDUFA3,PAF1,SMIM15,TAZ,C19orf44,FAM83H,PSMD13,BAIAP2L2,RAB4B,CISD3,DHX34,CHKB,TRIM11,ABHD14B,LLGL2,BABAM1,PIH1D1,CAPN1,NDUFA2,BORCS6,FDX2,EMC7,USH1C,ZNF593,CCS,COX6C,CCDC159,ABCA7,ACOT8,GAS8,RRP7A,CCDC12,DSC2,FDXR,GALE,ERCC5,CHMP4C,VSIG2,DNAJC4,PPOX,CD63,AK1,MRPL20,SH3YL1,COX16,CORO2A,KAZALD1,TIMM44,CNPPD1,RPL22L1,CAPN10,BCAP31,GMDS,BAIAP2L1,UBL7,FAM71E1,CWC15,PPA2,FBXO44,ATP5F1C,TMEM120A,CYP3A5,TUSC2,FN3K,LMF1,MRPS15,MPC2,THOC6,UBOX5,PRXL2B,DENND6B,SGF29,NEK8,MBD3,MGAT4B,SERF2,VPS28,ATP13A1,PSPN,MRPS9,RABEP2,ALKBH4,CDC37,PYURF,GRTP1,NDUFAF5,FOXA2,DMTN,NDUFA6,PLXNB1,ATPAF2,EMC10,SPAG7,ACADS,PSMA2,SEM1,MYL12B,C1orf35,PLAAT3,EIPR1,AFMID,ZER1,SEC61B,COPS9,ZMAT5,PLA2G6,TMEM86B,MKRN2OS,BSG,FAM50A,MAP2K2,ALKBH7,MRPL22,SCRN2,ANKS3,DDA1,SMDT1,GDF15,TXNRD2,DHRS3,KRT18,CRYGS,HCN3,MCRIP2,TPPP3,TNK1,FAM234A,SLC16A11,URGCP,NOSTRIN,BTBD2,MAP2K7,PPAN,DPH7,UBE2M,CD320,NDUFAF8,ME3,TMEM115,NDUFA13,NUCB1,SNRPD2,PPIC,BCL7C,TMEM259,PDZD11,PYCR2,IFT27,ZNHIT1,SARS2,SWSAP1,RAB13,NRTN,CLN3,UBE2D4,KEAP1,RIN1,CRLS1,SPPL3,CUEDC1,GTPBP3,C2CD2L,RAPGEFL1,FAM174B,OCIAD2,TMEM9B,UBXN1,MANF,PEX16,FBXL6,GATA6,GSK3A,RBM10,COA8,ARL8A,MOSPD3,NDUFA8,SPATA20,COASY,CNFN,EDEM2,NEDD8,RAB25,NACA,S100A11,YPEL3,ATP5MC2,TRIM15,HSD11B1L,FASTK,TMEM125,ECH1,DXO,CCDC57,FAM174C,FKBP8,EPOR,ARFIP2,RAB20,DPM2,RAB11B,DPP7,STX3,TRAPPC12,ACSS1,DNAJC1,SERTAD3,HS1BP3,PRKAR1B,KCTD13,S100A14,SSH3,TPRN,SPRN,MIDN,PDZK1IP1,PTPRH,CDC42BPG,BNIP1,UQCC2,AGPAT2,SLC9A3R1,ENSA,GTF2F1,BBC3,CBY1,WDR83,USF1,SLC25A29,CAMKMT,SEMA6A,ATP5MK,CYSRT1,NOC4L,PLEKHA6,MTLN,FBXW4,TSEN54,NT5C3A,LMNTD2,MARVELD2,NUPR1,FAM193B,PNKP,TMEM184A,MRPS25,EIF3K,SVIP,DECR2,MPZL3,ENTPD2,TRIR,JMJD4,SCNM1,GLI4,PDE9A,NDUFB8,COX5A,NPRL3,SLC37A4,SLC44A4,CAMK2N1,FNDC10,SMIM5,MIX23,GNPTG,C11orf68,COMMD9,KIF13B,MMP15,ZNF44,NECAB3,ABHD12,CCDC137,DOHH,RMND5B,RBM47,EPN1,SYCE1L,BRMS1,MYDGF,LENG1,MBOAT7,ATF4,PEX11G,LRRC56,TRADD,TLE2,SF3A2,MFSD6L,FIZ1,TM7SF2,CD2BP2,PTOV1,GSTO1,TMEM134,ORAI3,TNFRSF14,MLLT1,ATP6AP1,DHRS11,MVD,FAM3A,ATP5F1E,POMT1,MRPL47,UBE2J2,TIMM13,MTIF3,NDUFA7,LYPLA2,EFNA4,UQCRB,COQ4,ACBD4,TMEM223,SLC25A10,CHMP1A,EPS8L1,GEMIN7,C9orf116,AGR3,ANKRD54,RASSF7,GPR35,B3GALT4,NR2C2AP,SDC4,ARFRP1,HNF1B,AAMDC,MRPL27,PLPP2,RILP,ARPC4,MICOS10,TRA2A,APRT,DUS1L,ECHS1,RAB5B,IRF2BP1,HSD17B10,C1orf210,FAM83E,DNAJC30,PCSK1N,IRF3,IMP3,PERM1,C7orf50,CCDC92,GADD45GIP1,KRT8,PPP1R16A,SS18L2,RFXANK,HID1,BCAR1,SHC2,DMKN,LMTK3,PLEKHH3,DBP,DNAJB2,COX17,OGFOD3,TXNDC17,GAMT,PTTG1IP,PLEKHJ1,DYRK1B,TRPM4,CLN6,CKB,EIF2AK1,TELO2,ETFB,LRRC29,HEXIM1,RPL36A,THAP3,C6orf47,PCP2,CLASRP,DBNDD1,TMA7,YBEY,SOX12,SPIRE2,POLR2E,RPS19BP1,ESRP2,HPN,TMEM11,NDUFV3,SCNN1A,CHMP4B,NACC1,PPIB,CYHR1,SIRT6,COLCA2,NELFA

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

ANKRD39,KRT18,DHRS3,LAMTOR2,FAM174B,CENPB,SULT1A1,RAB20,ABHD11,ATP6V1F,NUDT8,PLEKHG6,FUT6,PEX11G,ZNF57,COX16,DDAH1,CDC42EP1,MISP,PGLS,C19orf73,KEAP1,ATP6AP1,PTK6,FAM110A,PDDC1,RAB25,HSH2D,LPAR2,TRNP1,UBXN1,BCAM,CLN6,NR2F6,CAMK2N1,ELOF1,IL17RE,HMOX2,C19orf44,SLC37A4,BCAT2,ZER1,RGL3,BBC3,FKBPL,C7orf50,STX3,RBM10,ATP5D,INSR,PIH1D1,TLE2,ITPA,COX6A1,ALKBH4,MGST3,NDUFB1,SHFM1,SMAGP,VAMP8,DNAJC4,VPS28,COX7B,TUSC2,UQCR11,COX17,SIRT7,KCNQ1,PRDX5,TMEM30B,CDC34,VMAC,CALML4,HINT2,C6orf203,ANKRD54,RPS27L,BANF1,QTRT1,GSTK1,MYL5,KRT8,SLC16A11,TIMM22,TMCO4,C14orf2,PCYT2,HSCB,MANBAL,ABHD12,PRR13,PSMA2,NDUFB11,SETD4,FGFR4,RBM42,TMEM129,PPCDC,SEMA6A,INO80C,ATPAF2,NT5C,SPINT2,GRTP1,NDUFS5,PDE9A,FAM234A,IRF3,FAM213B,GGA1,OGFOD3,IFI27L1,SCNM1,TELO2,ARRDC2,JUND,TRIM15,MICALL2,ABHD14B,CYTH2,RILP,TRIOBP,PPDPF,PTCD1,TICAM1,SLC35D2,MAP2K2,CAMSAP3,SLC25A11,GADD45GIP1,CAPNS1,NDUFA8,TRMT112,USMG5,TRIM11,SLC25A10,ATP5I,NMRAL1,DHRSX,C11orf49,C9orf16

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CTD-2396E7.11

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

FMNL1,STK10,TCP1,PPT1,MYO9A,ARID1A,ANTXR1,DYSF,ATM,RDX,ENTPD7,QSER1,PPP1R12A,GNL3L,NXPE3,FEZ1,P3H1,CD86,CAD,MEF2C,EDEM1,PRKCB,CREBBP,PBRM1,PSMC1,SRP72,POLH,LILRB2,SIN3A,PRRC2C,FCGR2A,ZEB2,ARID1B,CALD1,SLFN5,NMD3,GOLIM4,PHF20,CYLD,CDC27,ABRAXAS1,ZHX3,MRAS,GTF2H3,REPS1,FBXO11,SDC3,SEC23A,GIT2,KLF13,RBMS3,SMAD1,AGFG1,SNRNP200,TANGO6,TAB2,YAP1,BRMS1L,CRLF3,MYLK,MSH6,FOXN3,GTF3C3,MARCHF7,OSBPL8,BNC1,CERCAM,SERPINF1,AZI2,JAM2,VAMP7,PLSCR4,RBM7,ABL2,ACOT9,CAV1,ITGB2,NUP58,GOSR2,HBP1,PPFIBP1,IPO9,CLASP1,NAA50,CUL2,NIN,SMG8,CENPN,HUWE1,SLCO2B1,TEP1,MIS18BP1,CALU,KCTD20,RB1,LPP,EDNRA,DCAF5,RABEP1,SH3PXD2B,NOTCH2,ITCH,PDPN,FNDC3B,ATF1,NDE1,HDGFL3,SCPEP1,TAF1A,PRKG1,NOMO2,PLXDC1,RAP1GDS1,CLIP4,PARP1,FAM168B,ADCY7,RACGAP1,POGLUT3,FPR1,FCHSD2,FAM104A,WDR82,EDC4,SLC9A9,GSDME,ACTN1,GNG2,RNF214,VRK1,DLC1,TUT4,GTF2H1,ARIH1,FNDC3A,PIK3CD,PLXND1,FOXN2,DKK3,THY1,ZFP1,KCTD10,MAZ,FUBP1,PKD2,COL6A2,MAPK14,ARHGAP23,TP53BP1,MS4A6A,DIXDC1,IFNAR2,USP32,ADSL,G3BP1,CCDC69,LLGL1,FERMT2,STAT3,DNMT1,PRMT5,DDX3X,IPO5,ASXL2,MAP3K20,GLIPR1,POLR2B,UTRN,CYRIB,R3HDM1,CLCN6,HSPG2,MTDH,MAP3K3,ATP2B4,PPM1K,GNPTAB,USP19,ITGA9,RAP1B,GNE,XRN1,SMG6,F13A1,INVS,PAPLN,NUP98,CFH,KIAA0586,TRIM23,PCDH18,AKT3,TFIP11,GGCX,CEP68,SLC12A6,FBXL7,COL12A1,CSNK1A1,PPP1R12B,ZEB1,SETD7,PPP3CB,MRC2,PHF20L1,C1R,UGGT1,VRK2,RPE,TAF2,MYADM,CAPZB,RHOJ,F2R,PDCD10,HDAC4,GNAI2,HAUS2,TWSG1,CIP2A,EMC1,TAF5L,CEP19,DSTYK,CAMSAP2,ITSN1,PDE4B,OLFML1,MYH9,CHST11,TGFB1,USP15,FCF1,SH3PXD2A,NUP155,NEDD4,KAT6A,LEPR,SEPTIN10,UBR1,PCDHGC3,ACTR3,CHD8,IL1R1,MSRB3,PRDM2,LAYN,FBLN2,IARS1,CDV3,CAP1,SMC4,KATNAL1,VGLL4,MACF1,SH3GLB1,RIC1,FLNA,ATP8B2,RORA,MR1,CPED1,SEC24D,UBE2D3,YIPF5,DOCK7,SEPTIN11,KIF13A,ARNT,CORO1C,GARRE1,AFAP1L1,OLFML2B,RC3H2,HIF1A,PPM1F,XPO1,CCSER2,RNF169,LAMA4,UBR5,PRIM1,DOCK8,GPR161,CNIH1,TBC1D2B,COPZ2,URB1,USP9X,SATB1,NOTCH3,MTO1,UBA2,BMT2,INHBA,COL6A1,DDR2,WNK1,FAM126A,SSH1,CPXM1,SUN2,GAS7,KLHL5,TTF2,MAP4K4,SMCHD1,FNBP1,LRCH3,ASAP1,SHCBP1,PLEKHG2,LRRC8C,NID2,STAT1,PTK7,KIF2A,PPP2R5C,EIF3L,TNC,BACE1,POLK,BRF2,IL6ST,BLOC1S6,HAT1,ABCE1,MRTFB,USP8,RIN3,FAM114A2,TECPR2,UTP23,MMP2,ERCC4,FAM172A,INPP4A,CTPS1,FER,PALLD,TIMP2,TNS3,INTS7,PPM1M,QKI,CDC5L,BNC2,BHMT2,CEP170,SYT11,NT5C2,HIPK1,CLEC11A,L3HYPDH,LIMS1,SNX6,MTR,RRM1,HBS1L,TRIM37,STAB1,ANKFY1,MCM5,A2M,CLTC,MSH2,FRMD6,ATP2A2,UHRF2,LZIC,TIMELESS,ANKRD50,LIMK1,BIRC2,CDH13,GART,M6PR,HSPA8,SNX29,ABCB7,NRP1,BBX,CDYL,TAF1,PCNX1,UBR4,CDH11,VIRMA,COL3A1,ITGAV,TTBK2,CCP110,PHF19,RBL1,SNTB2,EML1,GJC1,RFX5,NCKAP1L,GTDC1,MPDZ,MCC,PTDSS1,BOC,PRPS1,COL6A3,ARSB,ZFYVE1,MIDEAS,ZNF106,RASA1,ZWILCH,RSU1,ADAMTS12,MAP4,SWAP70,MCM8,SF3A1,PHC3,SIK3,ABHD5,TAF1B,TRPS1,DOCK9,SYNJ1,LRR1,IL7R,ASB1,SSPN,ERC1,TNPO1,MCAM,COL8A2,USP31,NTAN1,NEK7,ADAMTS2,BMP1,H6PD,FAM160B1,HPS5,RO60,CYB5R4,ACADM,LTBP2,DENND5A,EIF2AK4,FBLN5,MIA3,TMEM131L,AFAP1,FGL2

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000275234	ENST00000615487	exon_skip_2091	chr1:17634547-17634562	-5.57	-0.4642	ARHGEF10L	ENST00000361221	In-frame
ENSG00000275234	ENST00000615487	exon_skip_6419	chr1:51756319-51756358	-7.54	-0.2218	OSBPL9	ENST00000428468	In-frame
ENSG00000275234	ENST00000615487	exon_skip_14329	chr1:178892229-178892307	-9.93	-0.1773	RALGPS2	ENST00000367635	In-frame
ENSG00000275234	ENST00000615487	exon_skip_37475	chr1:225504990-225505053	-10.03	-0.1592	ENAH	ENST00000366844	In-frame
ENSG00000275234	ENST00000615487	exon_skip_44853	chr10:104010815-104010908	-12.60	-0.1482	SLK	ENST00000369755	In-frame
ENSG00000275234	ENST00000615487	exon_skip_45125	chr10:112964555-112964624	-8.34	-0.1516	TCF7L2	ENST00000355995	In-frame
ENSG00000275234	ENST00000615487	exon_skip_48713	chr10:34336198-34336243	-6.55	-0.1598	PARD3	ENST00000374789	In-frame
ENSG00000275234	ENST00000615487	exon_skip_59476	chr11:57815914-57816001	-16.60	-0.2000	CTNND1	ENST00000399050	In-frame
ENSG00000275234	ENST00000615487	exon_skip_60345	chr11:63903985-63904147	-20.50	-0.1404	MARK2	ENST00000402010	In-frame
ENSG00000275234	ENST00000615487	exon_skip_64939	chr11:112230207-112230230	-5.63	-0.3753	PTS	ENST00000280362	Frame-shift
ENSG00000275234	ENST00000615487	exon_skip_76409	chr11:85711112-85711232	-11.28	-0.1267	SYTL2	ENST00000528231	In-frame
ENSG00000275234	ENST00000615487	exon_skip_98384	chr12:124327408-124327633	-23.25	-0.1921	NCOR2	ENST00000405201	In-frame
ENSG00000275234	ENST00000615487	exon_skip_114200	chr14:73279280-73279424	-17.00	-0.1308	NUMB	ENST00000355058,ENST00000555238	In-frame
ENSG00000275234	ENST00000615487	exon_skip_146683	chr16:85780378-85780473	-13.11	-0.1580	EMC8	ENST00000253457	Frame-shift
ENSG00000275234	ENST00000615487	exon_skip_148110	chr17:4892401-4892512	-19.24	-0.1886	MINK1	ENST00000355280	In-frame
ENSG00000275234	ENST00000615487	exon_skip_150188	chr17:27643524-27643620	-14.74	-0.4467	LGALS9	ENST00000395473	In-frame
ENSG00000275234	ENST00000615487	exon_skip_287890	chr17:29116443-29116455	-4.13	-0.6883	MYO18A	ENST00000527372	In-frame
ENSG00000275234	ENST00000615487	exon_skip_296984	chr18:58335477-58335537	-10.55	-0.2512	NEDD4L	ENST00000400345	In-frame
ENSG00000275234	ENST00000615487	exon_skip_384879	chr3:52554723-52554879	-24.05	-0.1670	PBRM1	ENST00000296302	In-frame
ENSG00000275234	ENST00000615487	exon_skip_386291	chr3:108050577-108050602	-7.23	-0.3805	CD47	ENST00000361309	Frame-shift
ENSG00000275234	ENST00000615487	exon_skip_423795	chr4:55888887-55888932	-8.03	-0.3491	EXOC1	ENST00000346134,ENST00000381295	In-frame
ENSG00000275234	ENST00000615487	exon_skip_456460	chr6:17771113-17771218	-14.56	-0.1916	KIF13A	ENST00000259711	In-frame
ENSG00000275234	ENST00000615487	exon_skip_499771	chr9:128592982-128593042	-11.84	-0.2277	SPTAN1	ENST00000372731	In-frame
ENSG00000275234	ENST00000615487	exon_skip_516535	chrX:119840645-119840684	-5.88	-0.1897	UPF3B	ENST00000276201	In-frame
ENSG00000275234	ENST00000615487	exon_skip_302276	chr19:10808568-10808580	-4.44	-2.2200	DNM2	ENST00000355667	In-frame
ENSG00000275234	ENST00000615487	exon_skip_40119	chr10:24494499-24494604	-10.86	-0.1488	KIAA1217	ENST00000376454	In-frame
ENSG00000275234	ENST00000615487	exon_skip_85538	chr12:71894324-71894375	-11.32	-0.2830	TBC1D15	ENST00000550746	In-frame
ENSG00000275234	ENST00000615487	exon_skip_334374	chr2:227347225-227347384	-13.36	-0.1077	MFF	ENST00000353339	In-frame
ENSG00000275234	ENST00000615487	exon_skip_375623	chr3:58141857-58141929	-11.86	-0.1883	FLNB	ENST00000295956	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000275234	ENST00000615487	exon_skip_1717	chr1:15721328-15721388	-9.35	-0.4065	PLEKHM2	ENST00000375799	In-frame
ENSG00000275234	ENST00000615487	exon_skip_21610	chr1:9737497-9737554	-8.11	-0.1886	CLSTN1	ENST00000377298	In-frame
ENSG00000275234	ENST00000615487	exon_skip_21628	chr1:9756480-9756510	-7.66	-0.2641	CLSTN1	ENST00000377298	In-frame
ENSG00000275234	ENST00000615487	exon_skip_33516	chr1:156938417-156938513	-13.38	-0.1503	ARHGEF11	ENST00000361409	In-frame
ENSG00000275234	ENST00000615487	exon_skip_43507	chr10:84499874-84499959	-11.70	-0.1500	CCSER2	ENST00000224756	Frame-shift
ENSG00000275234	ENST00000615487	exon_skip_52231	chr10:93392916-93392955	-7.75	-0.6458	MYOF	ENST00000359263	In-frame
ENSG00000275234	ENST00000615487	exon_skip_59233	chr11:47288967-47289027	-11.24	-0.3306	MADD	ENST00000311027	In-frame
ENSG00000275234	ENST00000615487	exon_skip_75223	chr11:72012400-72012442	-5.70	-0.1500	NUMA1	ENST00000393695	In-frame
ENSG00000275234	ENST00000615487	exon_skip_90104	chr12:10709907-10710114	-23.67	-0.1308	YBX3	ENST00000228251	In-frame
ENSG00000275234	ENST00000615487	exon_skip_97739	chr12:121244572-121244615	-7.91	-0.2326	CAMKK2	ENST00000324774,ENST00000402834,ENST00000404169	Frame-shift
ENSG00000275234	ENST00000615487	exon_skip_104174	chr13:79353152-79353224	-7.34	-0.1882	RBM26	ENST00000438737	In-frame
ENSG00000275234	ENST00000615487	exon_skip_287874	chr17:29085603-29085648	-7.78	-0.2593	MYO18A	ENST00000527372	In-frame
ENSG00000275234	ENST00000615487	exon_skip_300058	chr18:79933968-79934022	-10.91	-0.2661	PQLC1	ENST00000397778	In-frame
ENSG00000275234	ENST00000615487	exon_skip_337919	chr2:27445744-27445843	-11.18	-0.1189	IFT172	ENST00000260570	In-frame
ENSG00000275234	ENST00000615487	exon_skip_361434	chr21:25997359-25997416	-10.21	-0.2084	APP	ENST00000346798	In-frame
ENSG00000275234	ENST00000615487	exon_skip_368285	chr22:29329711-29329720	-3.46	-0.5767	AP1B1	ENST00000357586,ENST00000405198	In-frame
ENSG00000275234	ENST00000615487	exon_skip_376144	chr3:100311832-100311877	-6.43	-0.3782	TBC1D23	ENST00000394144	In-frame
ENSG00000275234	ENST00000615487	exon_skip_382356	chr3:37091466-37091538	-8.00	-0.1538	LRRFIP2	ENST00000336686	In-frame
ENSG00000275234	ENST00000615487	exon_skip_436488	chr5:96726793-96726859	-7.64	-0.1389	CAST	ENST00000341926,ENST00000395813	In-frame
ENSG00000275234	ENST00000615487	exon_skip_451515	chr6:41080810-41080897	-16.49	-0.3748	NFYA	ENST00000341376	In-frame
ENSG00000275234	ENST00000615487	exon_skip_470719	chr7:117134123-117134192	-9.48	-0.1580	ST7	ENST00000265437	In-frame
ENSG00000275234	ENST00000615487	exon_skip_497057	chr9:90867130-90867199	-8.61	-0.1367	SYK	ENST00000375746,ENST00000375754	In-frame
ENSG00000275234	ENST00000615487	exon_skip_514511	chrX:41555599-41555635	-7.57	-0.2912	CASK	ENST00000378163	In-frame
ENSG00000275234	ENST00000615487	exon_skip_515330	chrX:65524563-65524614	-13.04	-0.3105	LAS1L	ENST00000374811	In-frame
ENSG00000275234	ENST00000615487	exon_skip_87733	chr12:120571190-120571291	-11.87	-0.1522	RNF10	ENST00000325954	Frame-shift
ENSG00000275234	ENST00000615487	exon_skip_380242	chr3:186784961-186785101	-15.53	-0.1213	EIF4A2	ENST00000323963	Frame-shift
ENSG00000275234	ENST00000615487	exon_skip_494822	chr9:2651414-2651498	-7.63	-0.1031	VLDLR	ENST00000382100	In-frame
ENSG00000275234	ENST00000615487	exon_skip_353395	chr20:62130218-62130296	-10.98	-0.1664	LSM14B	ENST00000279068	In-frame
ENSG00000275234	ENST00000615487	exon_skip_357772	chr20:47659398-47659452	-9.30	-0.2114	SULF2	ENST00000359930,ENST00000484875	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000275234	hsa-mir-134	ENST00000615487	chr19:6469522-6469600	158.00	-65.59	70	NA
ENSG00000275234	hsa-mir-378a	ENST00000615487	chr19:6469940-6470006	153.00	-59.23	60	NA
ENSG00000275234	hsa-mir-378a	ENST00000615487	chr19:6469504-6469569	145.00	-68.09	61	NA
ENSG00000275234	hsa-mir-378a	ENST00000615487	chr19:6470018-6470085	143.00	-62.69	63	NA
ENSG00000275234	hsa-mir-379	ENST00000615487	chr19:6469670-6469744	183.00	-58.56	72	NA

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Variants for CTD-2396E7.11

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000275234	ENSG00000003147	ICA1	BLCA,BRCA,CESC,CHOL,ESCA,HNSC,KICH,KIRP,LIHC,PAAD,TGCT,THYM,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000008324	SS18L2	BLCA,BRCA,CESC,ESCA,HNSC,KIRP,TGCT,THCA,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000071553	ATP6AP1	BLCA,BRCA,CHOL,KICH,PAAD,THYM,UCS	BRCA
ENSG00000275234	ENSG00000073350	LLGL2	BLCA,BRCA,CESC,CHOL,ESCA,HNSC,KIRC,KIRP,LIHC,LUAD,LUSC,MESO,PAAD,THYM,UCS	BRCA
ENSG00000275234	ENSG00000100997	ABHD12	BLCA,BRCA,CHOL,HNSC,KICH,LIHC,PAAD,THCA,UCS	BRCA
ENSG00000275234	ENSG00000105327	BBC3	BLCA,BRCA,CHOL,ESCA,HNSC,KICH,KIRP,LIHC,PAAD,PRAD,STAD,THCA	BRCA
ENSG00000275234	ENSG00000105963	ADAP1	BLCA,BRCA,CESC,CHOL,ESCA,KICH,KIRP,PAAD,THCA,UCEC,UCS	BRCA,UCEC
ENSG00000275234	ENSG00000106077	ABHD11	BLCA,BRCA,CESC,CHOL,ESCA,HNSC,KICH,KIRC,KIRP,LIHC,PAAD,TGCT,THCA,THYM,UCS	BRCA
ENSG00000275234	ENSG00000116898	MRPS15	BLCA,CHOL,KIRP,PRAD,TGCT,THCA,UCEC	UCEC
ENSG00000275234	ENSG00000117308	GALE	BLCA,BRCA,ESCA,KIRP,MESO,PAAD,TGCT,THCA,UCS	BRCA
ENSG00000275234	ENSG00000118640	VAMP8	BLCA,BRCA,CHOL,HNSC,KIRP,LIHC,MESO,PAAD,PRAD,STAD,TGCT,THCA,THYM,UCEC,UCS	BRCA,UCEC
ENSG00000275234	ENSG00000119888	EPCAM	BLCA,CESC,CHOL,COAD,ESCA,LIHC,PAAD,READ,TGCT,THCA,THYM,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000124839	RAB17	BLCA,BRCA,CESC,CHOL,COAD,ESCA,KIRC,LUAD,LUSC,MESO,PAAD,PRAD,TGCT,UCEC,UCS	BRCA,UCEC	LUSC
ENSG00000275234	ENSG00000125731	SH2D3A	BLCA,CHOL,COAD,ESCA,KIRC,KIRP,LUAD,MESO,OV,PAAD,STAD,THCA,THYM,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000127922	SEM1	BLCA,CHOL,KIRP,PAAD,READ,TGCT,THCA,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000129354	AP1M2	BLCA,BRCA,CESC,CHOL,ESCA,HNSC,KICH,LUAD,MESO,PAAD,PRAD,STAD,TGCT,THCA,THYM,UCS	BRCA
ENSG00000275234	ENSG00000130545	CRB3	BLCA,BRCA,CESC,CHOL,DLBC,ESCA,HNSC,KICH,KIRC,LIHC,LUAD,LUSC,MESO,OV,PAAD,PRAD,STAD,TGCT,THCA,THYM,UCEC,UCS	BRCA,UCEC
ENSG00000275234	ENSG00000130590	SAMD10	BLCA,BRCA,ESCA,HNSC,KICH,KIRP,LIHC,LUAD,PAAD,PRAD,STAD,THCA,THYM	BRCA
ENSG00000275234	ENSG00000130701	RBBP8NL	BLCA,BRCA,HNSC,KICH,LUAD,PAAD,PRAD,THYM,UCS	BRCA
ENSG00000275234	ENSG00000130770	ATP5IF1	BLCA,BRCA,CESC,ESCA,HNSC,KIRC,KIRP,PAAD,PRAD,STAD,TGCT,THCA,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000131495	NDUFA2	BLCA,BRCA,CESC,CHOL,ESCA,HNSC,KIRP,PAAD,STAD,THCA,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000132698	RAB25	BLCA,BRCA,CHOL,HNSC,LIHC,LUAD,PAAD,PRAD,STAD,TGCT,THCA,THYM,UCS	BRCA
ENSG00000275234	ENSG00000139835	GRTP1	BLCA,BRCA,HNSC,KIRC,PAAD,TGCT,THYM	BRCA
ENSG00000275234	ENSG00000140264	SERF2	BLCA,BRCA,CESC,CHOL,HNSC,KIRP,PAAD,PRAD,THCA,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000142675	CNKSR1	BLCA,BRCA,LUAD,PAAD,PRAD,THCA,THYM,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000143543	JTB	BLCA,BRCA,CESC,CHOL,ESCA,HNSC,PAAD,PRAD,TGCT,THCA,UCS	BRCA
ENSG00000275234	ENSG00000143793	C1orf35	BLCA,BRCA,CHOL,HNSC,KIRP,LIHC,PAAD,PRAD,THCA	BRCA
ENSG00000275234	ENSG00000143919	CAMKMT	BLCA,CESC,CHOL,ESCA,HNSC,TGCT,THCA,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000156873	PHKG2	BLCA,BRCA,CESC,CHOL,HNSC,KICH,KIRP,MESO,PAAD,PRAD,THCA,UCS	BRCA
ENSG00000275234	ENSG00000160325	CACFD1	BLCA,BRCA,CESC,CHOL,COAD,ESCA,KICH,KIRC,KIRP,LIHC,PAAD,TGCT,THCA,THYM,UCS	BRCA
ENSG00000275234	ENSG00000160345	C9orf116	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,PAAD,TGCT	BRCA
ENSG00000275234	ENSG00000161328	LRRC56	BLCA,BRCA,CHOL,ESCA,HNSC,KIRP,PAAD,THCA,THYM	BRCA
ENSG00000275234	ENSG00000164855	TMEM184A	BLCA,BRCA,CHOL,KICH,LIHC,PAAD,UCS	BRCA
ENSG00000275234	ENSG00000164897	TMUB1	BLCA,BRCA,CHOL,KICH,KIRP,PAAD,TGCT,THCA,UCEC	UCEC
ENSG00000275234	ENSG00000167608	TMC4	BLCA,BRCA,CESC,CHOL,COAD,ESCA,KICH,LIHC,LUAD,MESO,PAAD,PRAD,STAD,THYM,UCS	BRCA
ENSG00000275234	ENSG00000167861	HID1	BLCA,BRCA,CESC,CHOL,ESCA,LIHC,LUAD,MESO,PAAD,PRAD,UCS	BRCA
ENSG00000275234	ENSG00000168350	DEGS2	BLCA,BRCA,CESC,CHOL,ESCA,PAAD,THCA,UCS	BRCA
ENSG00000275234	ENSG00000172366	MCRIP2	BLCA,BRCA,CESC,CHOL,ESCA,HNSC,KICH,KIRP,MESO,PAAD,PRAD,THCA,UCS	BRCA
ENSG00000275234	ENSG00000172663	TMEM134	BLCA,BRCA,CHOL,KICH,KIRP,LIHC,PAAD,THCA,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000173915	ATP5MK	BLCA,BRCA,CESC,CHOL,HNSC,KIRP,PAAD,TGCT,THCA,UCEC	UCEC
ENSG00000275234	ENSG00000174943	KCTD13	BLCA,BRCA,HNSC,KIRP,PAAD,PRAD,THCA	BRCA
ENSG00000275234	ENSG00000176058	TPRN	BLCA,BRCA,CESC,CHOL,ESCA,HNSC,KICH,KIRC,KIRP,LIHC,PAAD,TGCT,THCA,THYM	BRCA
ENSG00000275234	ENSG00000176532	PRR15	BLCA,BRCA,CESC,COAD,ESCA,PAAD,STAD,THCA	BRCA
ENSG00000275234	ENSG00000177548	RABEP2	BLCA,BRCA,CHOL,HNSC,KICH,KIRP,LIHC,PRAD,THCA,UCEC,UCS	BRCA
ENSG00000275234	ENSG00000178078	STAP2	BLCA,BRCA,CESC,CHOL,COAD,HNSC,KIRC,KIRP,LIHC,LUAD,MESO,PAAD,PRAD,STAD,THCA,THYM,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000182173	TSEN54	BLCA,BRCA,CHOL,ESCA,HNSC,KIRP,LIHC,PAAD,PRAD,THCA,UCS	BRCA
ENSG00000275234	ENSG00000183248	PRR36	BLCA,BRCA,CHOL,KIRP,LUAD,OV,PAAD,PRAD,THCA,UCS	BRCA
ENSG00000275234	ENSG00000184012	TMPRSS2	BLCA,CHOL,COAD,ESCA,HNSC,KICH,LIHC,LUSC,READ,UCS		LUSC
ENSG00000275234	ENSG00000185442	FAM174B	BLCA,BRCA,CHOL,ESCA,LUAD,MESO,PAAD,PRAD,TGCT,THCA,UCEC	UCEC
ENSG00000275234	ENSG00000185522	LMNTD2	BLCA,BRCA,KICH,KIRP,THYM,UCEC	BRCA
ENSG00000275234	ENSG00000188603	CLN3	BLCA,BRCA,CESC,CHOL,HNSC,LUAD,LUSC,MESO,PAAD,PRAD,UCS	BRCA
ENSG00000275234	ENSG00000188747	NOXA1	BLCA,BRCA,CESC,CHOL,ESCA,HNSC,KIRC,KIRP,LIHC,PAAD,STAD,TGCT,THCA,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000196872	CRACDL	BLCA,COAD,ESCA,HNSC,KIRP,LUSC,THYM,UCS		LUSC
ENSG00000275234	ENSG00000204991	SPIRE2	BLCA,BRCA,CESC,ESCA,KICH,KIRP,LUAD,PAAD,THYM	BRCA
ENSG00000275234	ENSG00000205155	PSENEN	BLCA,BRCA,CHOL,COAD,KIRP,PAAD,PRAD,STAD,THCA,UCEC	BRCA
ENSG00000275234	ENSG00000212864	RNF208	BLCA,BRCA,CESC,CHOL,HNSC,KICH,KIRC,KIRP,PAAD,TGCT,THCA	BRCA
ENSG00000275234	ENSG00000228300	FAM174C	BLCA,BRCA,CESC,CHOL,HNSC,KICH,PAAD,PRAD,STAD,TGCT,THCA,UCEC,UCS	BRCA,UCEC
ENSG00000275234	ENSG00000229833	PET100	BLCA,BRCA,CESC,CHOL,COAD,HNSC,KIRC,KIRP,LIHC,PAAD,PRAD,TGCT,THCA,UCEC,UCS	BRCA
ENSG00000275234	ENSG00000267795	SMIM22	BLCA,BRCA,CESC,CHOL,ESCA,HNSC,MESO,PAAD,PRAD,STAD,THYM,UCEC,UCS	BRCA,UCEC
ENSG00000275234	ENSG00000269313	MAGIX	BLCA,CESC,CHOL,KICH,KIRC,KIRP,PAAD,PRAD,THCA,THYM,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000067836	ROGDI	BRCA,CHOL,HNSC,KICH,KIRC,KIRP,LUAD,PRAD,TGCT,UCS	BRCA
ENSG00000275234	ENSG00000074842	MYDGF	BRCA,CESC,CHOL,ESCA,LIHC,PAAD,PRAD,STAD,TGCT,THCA,UCS	BRCA
ENSG00000275234	ENSG00000088356	PDRG1	BRCA,CHOL,HNSC,KICH,KIRP,PAAD,PRAD,THCA	BRCA
ENSG00000275234	ENSG00000099812	MISP	BRCA,CESC,CHOL,COAD,ESCA,LIHC,MESO,PAAD,STAD,THYM,UCS	BRCA
ENSG00000275234	ENSG00000100908	EMC9	BRCA,CHOL,LIHC,PAAD,PRAD,TGCT,THCA,UCS	BRCA
ENSG00000275234	ENSG00000105655	ISYNA1	BRCA,CHOL,HNSC,KIRP,PAAD,THCA	BRCA
ENSG00000275234	ENSG00000105707	HPN	BRCA,KICH,KIRC,MESO,PRAD,TGCT,THCA,UCS	BRCA
ENSG00000275234	ENSG00000109062	SLC9A3R1	BRCA,CHOL,COAD,HNSC,MESO,TGCT,UCS	BRCA
ENSG00000275234	ENSG00000110628	SLC22A18	BRCA,CESC,KIRC,PAAD,THCA,THYM,UCS	BRCA
ENSG00000275234	ENSG00000111057	KRT18	BRCA,CESC,CHOL,ESCA,KICH,KIRP,LIHC,PAAD,PRAD,STAD,TGCT,THCA,THYM,UCS	BRCA
ENSG00000275234	ENSG00000115255	REEP6	BRCA,ESCA,PAAD,PRAD,TGCT,THCA	BRCA
ENSG00000275234	ENSG00000115257	PCSK4	BRCA,CHOL,KICH,KIRP,LUAD,MESO,PAAD	BRCA
ENSG00000275234	ENSG00000116586	LAMTOR2	BRCA,CHOL,HNSC,KIRP,PAAD,PRAD,STAD,TGCT,THCA,UCEC,UCS	BRCA,UCEC
ENSG00000275234	ENSG00000119333	DYNC2I2	BRCA,CESC,CHOL,HNSC,KIRC,KIRP,PAAD,TGCT,THCA,UCS	BRCA
ENSG00000275234	ENSG00000125967	NECAB3	BRCA,CHOL,KICH,PAAD,PRAD,THYM	BRCA
ENSG00000275234	ENSG00000127554	GFER	BRCA,CESC,CHOL,HNSC,KICH,KIRP,PAAD,PRAD,STAD,TGCT,THCA,UCS	BRCA
ENSG00000275234	ENSG00000129235	TXNDC17	BRCA,CHOL,KIRP,PAAD,PRAD,STAD,TGCT,THCA,UCEC	BRCA,UCEC
ENSG00000275234	ENSG00000130005	GAMT	BRCA,KIRC,KIRP,PRAD,TGCT,THCA	BRCA
ENSG00000275234	ENSG00000131037	EPS8L1	BRCA,CHOL,KIRP,MESO,PRAD,THCA,UCS	BRCA
ENSG00000275234	ENSG00000136883	KIF12	BRCA,CESC,CHOL,KIRC,KIRP,LIHC,PAAD,TGCT,UCEC,UCS	BRCA
ENSG00000275234	ENSG00000136908	DPM2	BRCA,CHOL,KICH,KIRC,KIRP,PAAD,TGCT,THCA	BRCA
ENSG00000275234	ENSG00000137288	UQCC2	BRCA,CESC,CHOL,KIRP,LIHC,THCA	BRCA
ENSG00000275234	ENSG00000139410	SDSL	BRCA,CESC,ESCA,KIRP,PAAD,PRAD,TGCT,THYM	BRCA
ENSG00000275234	ENSG00000142235	LMTK3	BRCA,CHOL,KICH,KIRP,PAAD,THCA	BRCA
ENSG00000275234	ENSG00000145247	OCIAD2	BRCA,CESC,KIRC,KIRP,PAAD,PRAD,STAD,TGCT,THCA,UCEC,UCS	BRCA,UCEC
ENSG00000275234	ENSG00000148291	SURF2	BRCA,CHOL,KIRP,LIHC,PAAD,TGCT,THCA,UCEC	UCEC
ENSG00000275234	ENSG00000153406	NMRAL1	BRCA,CHOL,HNSC,KIRP,PAAD,PRAD,STAD,THCA,UCS	BRCA
ENSG00000275234	ENSG00000160877	NACC1	BRCA,CHOL,KICH,THCA,UCS	BRCA
ENSG00000275234	ENSG00000161513	FDXR	BRCA,CHOL,HNSC,KIRP,MESO,PRAD,THCA	BRCA
ENSG00000275234	ENSG00000162729	IGSF8	BRCA,MESO,PAAD,PRAD,THCA,UCS	BRCA
ENSG00000275234	ENSG00000163517	HDAC11	BRCA,CHOL,HNSC,KICH,KIRP,LIHC,LUAD,PAAD,READ,TGCT,THYM	BRCA
ENSG00000275234	ENSG00000164885	CDK5	BRCA,CHOL,KIRP,PAAD,THCA	BRCA
ENSG00000275234	ENSG00000164919	COX6C	BRCA,CHOL,HNSC,KICH,KIRP,PAAD,READ,THCA	BRCA
ENSG00000275234	ENSG00000171222	SCAND1	BRCA,CESC,CHOL,KIRP,PAAD,PRAD,STAD,TGCT,THCA	BRCA
ENSG00000275234	ENSG00000173272	MZT2A	BRCA,CHOL,HNSC,LIHC,PAAD,PRAD,THCA	BRCA
ENSG00000275234	ENSG00000173467	AGR3	BRCA,CESC,ESCA,KIRP,PAAD	BRCA
ENSG00000275234	ENSG00000175279	CENPS	BRCA,CESC,HNSC,KIRC,KIRP,PAAD,PRAD,THCA,UCEC	BRCA
ENSG00000275234	ENSG00000179178	TMEM125	BRCA,CESC,CHOL,ESCA,HNSC,KIRC,KIRP,LUAD,LUSC,MESO,PAAD,PRAD,STAD,TGCT,THCA,THYM,UCS	BRCA	LUSC
ENSG00000275234	ENSG00000196684	HSH2D	BRCA,CESC,ESCA,PRAD,UCS	BRCA
ENSG00000275234	ENSG00000197191	CYSRT1	BRCA,KIRP,TGCT,THCA,THYM	BRCA
ENSG00000275234	ENSG00000228594	FNDC10	BRCA,CHOL,KICH,LUAD,MESO,PRAD,THCA	BRCA
ENSG00000275234	ENSG00000102934	PLLP	CESC,CHOL,ESCA,KICH,KIRP,LIHC,LUSC,PAAD,STAD,UCS		LUSC
ENSG00000275234	ENSG00000153904	DDAH1	CESC,ESCA,LUSC,READ,UCEC		LUSC
ENSG00000275234	ENSG00000159713	TPPP3	CESC,CHOL,KIRP,LUSC,THCA		LUSC
ENSG00000275234	ENSG00000006625	GGCT	CHOL,HNSC,LIHC,TGCT,THYM,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000119242	CCDC92	CHOL,KIRC,KIRP,LIHC,LUSC,THCA		LUSC
ENSG00000275234	ENSG00000140832	MARVELD3	CHOL,COAD,ESCA,HNSC,KIRC,LIHC,PAAD,PRAD,READ,STAD,TGCT,THYM,UCEC,UCS	UCEC
ENSG00000275234	ENSG00000163584	RPL22L1	CHOL,PRAD,STAD,TGCT,THCA,UCEC	UCEC
ENSG00000275234	ENSG00000163072	NOSTRIN	COAD,ESCA,LUSC,PAAD,READ,TGCT		LUSC
ENSG00000275234	ENSG00000163898	LIPH	COAD,ESCA,HNSC,LUSC,READ		LUSC
ENSG00000275234	ENSG00000165175	MID1IP1	ESCA,KIRP,LUSC,PAAD,TGCT		LUSC
ENSG00000275234	ENSG00000174326	SLC16A11	KICH,LUSC,PAAD,THCA,THYM		LUSC

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000275234	ENST00000615487	GAS7	ENSG00000007237	ENST00000583882	-0.1248	8	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	GAS7	ENSG00000007237	ENST00000396115	-0.1576	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	GAS7	ENSG00000007237	ENST00000579158	-0.1576	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	KIF13A	ENSG00000137177	ENST00000502704	-0.2520	1	-	UCEC
ENSG00000275234	ENST00000615487	FRMD6	ENSG00000139926	ENST00000557405	-0.1059	191	LUSC	UCEC
ENSG00000275234	ENST00000615487	FRMD6	ENSG00000139926	ENST00000555197	-0.2652	548	LUSC	UCEC
ENSG00000275234	ENST00000615487	COL6A2	ENSG00000142173	ENST00000300527	-0.1253	456	-	UCEC
ENSG00000275234	ENST00000615487	COL6A2	ENSG00000142173	ENST00000397763	-0.6071	590	-	UCEC
ENSG00000275234	ENST00000615487	GPR161	ENSG00000143147	ENST00000539777	-0.1096	1	-	UCEC
ENSG00000275234	ENST00000615487	GPR161	ENSG00000143147	ENST00000537209	-0.1096	1	-	UCEC
ENSG00000275234	ENST00000615487	GPR161	ENSG00000143147	ENST00000546300	-0.1096	1	-	UCEC
ENSG00000275234	ENST00000615487	GPR161	ENSG00000143147	ENST00000271357	-0.1096	1	-	UCEC
ENSG00000275234	ENST00000615487	ATP8B2	ENSG00000143515	ENST00000368487	-0.1141	369	-	UCEC
ENSG00000275234	ENST00000615487	NXPE3	ENSG00000144815	ENST00000491511	-0.1026	1	-	UCEC
ENSG00000275234	ENST00000615487	NXPE3	ENSG00000144815	ENST00000422132	-0.1026	1	-	UCEC
ENSG00000275234	ENST00000615487	DIXDC1	ENSG00000150764	ENST00000440460	-0.1355	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	DIXDC1	ENSG00000150764	ENST00000615255	-0.1355	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	ADAMTS12	ENSG00000151388	ENST00000352040	-1.6050	504	LUSC	-
ENSG00000275234	ENST00000615487	MRAS	ENSG00000158186	ENST00000474559	-0.1859	513	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	DDR2	ENSG00000162733	ENST00000458105	-0.4065	206	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	DDR2	ENSG00000162733	ENST00000433757	-0.1271	528	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	COL3A1	ENSG00000168542	ENST00000317840	-0.1039	589	LUSC	UCEC
ENSG00000275234	ENST00000615487	LRRC8C	ENSG00000171488	ENST00000482063	-0.1029	463	-	BRCA
ENSG00000275234	ENST00000615487	TUBB6	ENSG00000176014	ENST00000590388	-0.1312	498	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	TUBB6	ENSG00000176014	ENST00000592683	-0.1666	515	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	TUBB6	ENSG00000176014	ENST00000590967	-0.1816	187	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	GNG2	ENSG00000186469	ENST00000553432	-0.1726	586	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	GNG2	ENSG00000186469	ENST00000557376	-0.1726	586	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	GNG2	ENSG00000186469	ENST00000554875	-0.1203	484	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	FLNA	ENSG00000196924	ENST00000369850	-0.1505	495	-	UCEC
ENSG00000275234	ENST00000615487	FLNA	ENSG00000196924	ENST00000344736	-0.4800	567	-	UCEC
ENSG00000275234	ENST00000615487	MAP3K3	ENSG00000198909	ENST00000584573	-0.1830	440	-	UCEC
ENSG00000275234	ENST00000615487	MAP3K3	ENSG00000198909	ENST00000577395	-0.2438	526	-	UCEC
ENSG00000275234	ENST00000615487	MAP3K3	ENSG00000198909	ENST00000581732	-0.1389	390	-	UCEC
ENSG00000275234	ENST00000615487	PCDHGC3	ENSG00000240184	ENST00000611950	-0.1976	343	-	UCEC
ENSG00000275234	ENST00000615487	PCDHGC3	ENSG00000240184	ENST00000617222	-0.5570	80	-	UCEC
ENSG00000275234	ENST00000615487	CFH	ENSG00000000971	ENST00000630130	-0.1169	124	-	BRCA
ENSG00000275234	ENST00000615487	CFH	ENSG00000000971	ENST00000359637	-0.1169	125	-	BRCA
ENSG00000275234	ENST00000615487	CEP68	ENSG00000011523	ENST00000537589	-0.1197	3	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	MYLK	ENSG00000065534	ENST00000583087	-0.2350	415	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	MCAM	ENSG00000076706	ENST00000264036	-0.1092	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	PPP1R12B	ENSG00000077157	ENST00000480184	-0.1356	6	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	EIF3L	ENSG00000100129	ENST00000381683	-0.3300	201	-	BRCA
ENSG00000275234	ENST00000615487	EIF3L	ENSG00000100129	ENST00000406934	-0.1201	523	-	BRCA
ENSG00000275234	ENST00000615487	SUN2	ENSG00000100242	ENST00000455125	-0.1146	1	-	UCEC
ENSG00000275234	ENST00000615487	SUN2	ENSG00000100242	ENST00000430185	-0.9129	74	-	UCEC
ENSG00000275234	ENST00000615487	CPED1	ENSG00000106034	ENST00000450913	-0.1235	576	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	MPDZ	ENSG00000107186	ENST00000536827	-0.1143	356	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	MPDZ	ENSG00000107186	ENST00000447879	-0.1143	357	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	MPDZ	ENSG00000107186	ENST00000546205	-0.3729	506	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	LEPR	ENSG00000116678	ENST00000371059	-0.5010	259	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	LEPR	ENSG00000116678	ENST00000406510	-0.2203	47	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	LEPR	ENSG00000116678	ENST00000344610	-0.2915	573	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	LEPR	ENSG00000116678	ENST00000371058	-0.2915	573	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	PKD2	ENSG00000118762	ENST00000502363	-0.4060	308	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	SSPN	ENSG00000123096	ENST00000540266	-0.2176	392	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	SSPN	ENSG00000123096	ENST00000535504	-0.8700	492	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	F13A1	ENSG00000124491	ENST00000445223	-0.1400	81	-	BRCA
ENSG00000275234	ENST00000615487	RHOJ	ENSG00000126785	ENST00000316754	-0.1183	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	SERPINF1	ENSG00000132386	ENST00000254722	-0.1264	202	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	BHMT2	ENSG00000132840	ENST00000255192	-0.1033	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	YAP1	ENSG00000137693	ENST00000531439	-2.4100	397	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	FBLN5	ENSG00000140092	ENST00000342058	-0.1608	445	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	FBLN5	ENSG00000140092	ENST00000556154	-0.1608	446	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	FBLN5	ENSG00000140092	ENST00000557570	-0.1203	70	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	TIMP2	ENSG00000035862	ENST00000592761	-0.3661	1	-	UCEC
ENSG00000275234	ENST00000615487	ATP2B4	ENSG00000058668	ENST00000458092	-0.1502	596	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	ACTN1	ENSG00000072110	ENST00000438964	-0.1228	318	-	UCEC
ENSG00000275234	ENST00000615487	ACTN1	ENSG00000072110	ENST00000376839	-0.2644	543	-	UCEC
ENSG00000275234	ENST00000615487	ACTN1	ENSG00000072110	ENST00000555075	-0.4243	587	-	UCEC
ENSG00000275234	ENST00000615487	FERMT2	ENSG00000073712	ENST00000399304	-0.2364	494	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	CDH13	ENSG00000140945	ENST00000428848	-0.2351	489	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	CDH13	ENSG00000140945	ENST00000567445	-0.1120	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	ITGA9	ENSG00000144668	ENST00000422441	-0.2042	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	BOC	ENSG00000144857	ENST00000473008	-0.1284	49	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	FEZ1	ENSG00000149557	ENST00000524435	-0.1115	518	-	BRCA
ENSG00000275234	ENST00000615487	UTRN	ENSG00000152818	ENST00000367526	-0.5050	288	-	BRCA
ENSG00000275234	ENST00000615487	JAM2	ENSG00000154721	ENST00000400532	-0.2152	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	AFAP1L1	ENSG00000157510	ENST00000296721	-0.1020	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	AFAP1L1	ENSG00000157510	ENST00000515000	-0.1269	164	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	FBLN2	ENSG00000163520	ENST00000404922	-0.1394	1	-	BRCA
ENSG00000275234	ENST00000615487	FBLN2	ENSG00000163520	ENST00000295760	-0.1394	1	-	BRCA
ENSG00000275234	ENST00000615487	FBLN2	ENSG00000163520	ENST00000492059	-0.3052	504	-	BRCA
ENSG00000275234	ENST00000615487	DLC1	ENSG00000164741	ENST00000316609	-0.4642	593	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	TBC1D2B	ENSG00000167202	ENST00000465531	-0.1367	513	-	UCEC
ENSG00000275234	ENST00000615487	MSRB3	ENSG00000174099	ENST00000540804	-0.2500	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	MSRB3	ENSG00000174099	ENST00000535664	-0.2836	56	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	A2M	ENSG00000175899	ENST00000318602	-0.1448	547	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	SLC9A9	ENSG00000181804	ENST00000474727	-0.1105	1	-	BRCA
ENSG00000275234	ENST00000615487	OLFML1	ENSG00000183801	ENST00000530135	-0.1188	371	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	PCDH18	ENSG00000189184	ENST00000611581	-0.3091	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	CCDC69	ENSG00000198624	ENST00000522964	-0.1864	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	CCDC69	ENSG00000198624	ENST00000519740	-0.2841	231	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	ITSN1	ENSG00000205726	ENST00000399353	-1.0225	604	-	BRCA
ENSG00000275234	ENST00000615487	ITSN1	ENSG00000205726	ENST00000399338	-0.3232	212	-	BRCA
ENSG00000275234	ENST00000615487	ITSN1	ENSG00000205726	ENST00000440794	-0.1189	78	-	BRCA
ENSG00000275234	ENST00000615487	TAF1A	ENSG00000143498	ENST00000366890	-0.1307	1	LUSC	-
ENSG00000275234	ENST00000615487	TAF1A	ENSG00000143498	ENST00000350027	-0.1307	1	LUSC	-
ENSG00000275234	ENST00000615487	ADSL	ENSG00000239900	ENST00000623063	-0.1312	1	LUSC	-
ENSG00000275234	ENST00000615487	ADSL	ENSG00000239900	ENST00000624474	-0.1416	1	LUSC	-
ENSG00000275234	ENST00000615487	EML1	ENSG00000066629	ENST00000555096	-0.1069	469	-	UCEC
ENSG00000275234	ENST00000615487	SMG6	ENSG00000070366	ENST00000536871	-0.4787	544	-	UCEC
ENSG00000275234	ENST00000615487	FBXL7	ENSG00000183580	ENST00000510662	-3.4350	219	-	UCEC
ENSG00000275234	ENST00000615487	MAP3K20	ENSG00000091436	ENST00000409176	-0.1572	523	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	MAP3K20	ENSG00000091436	ENST00000338983	-0.1086	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	NRP1	ENSG00000099250	ENST00000413802	-0.1085	3	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	NRP1	ENSG00000099250	ENST00000431894	-0.1803	479	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	NRP1	ENSG00000099250	ENST00000374821	-0.3791	576	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	NRP1	ENSG00000099250	ENST00000374822	-0.3791	576	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	NRP1	ENSG00000099250	ENST00000432372	-0.2345	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	NRP1	ENSG00000099250	ENST00000455749	-1.7150	441	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	PCNX1	ENSG00000100731	ENST00000439984	-0.1194	69	-	BRCA
ENSG00000275234	ENST00000615487	PCNX1	ENSG00000100731	ENST00000555780	-0.1877	145	-	BRCA
ENSG00000275234	ENST00000615487	SEC23A	ENSG00000100934	ENST00000548032	-0.2355	1	-	UCEC
ENSG00000275234	ENST00000615487	SEC23A	ENSG00000100934	ENST00000557280	-0.1238	357	-	UCEC
ENSG00000275234	ENST00000615487	SEC23A	ENSG00000100934	ENST00000553970	-0.1238	357	-	UCEC
ENSG00000275234	ENST00000615487	KATNAL1	ENSG00000102781	ENST00000380617	-0.1122	606	-	UCEC
ENSG00000275234	ENST00000615487	ZNF106	ENSG00000103994	ENST00000263805	-0.1404	1	-	BRCA
ENSG00000275234	ENST00000615487	ZNF106	ENSG00000103994	ENST00000565380	-0.1404	1	-	BRCA
ENSG00000275234	ENST00000615487	ZNF106	ENSG00000103994	ENST00000565500	-0.1404	1	-	BRCA
ENSG00000275234	ENST00000615487	ZNF106	ENSG00000103994	ENST00000569648	-0.6685	1	-	BRCA
ENSG00000275234	ENST00000615487	ZNF106	ENSG00000103994	ENST00000565611	-0.1266	1	-	BRCA
ENSG00000275234	ENST00000615487	CAV1	ENSG00000105974	ENST00000393470	-0.4008	485	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	LAMA4	ENSG00000112769	ENST00000521732	-0.1341	77	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	LAMA4	ENSG00000112769	ENST00000368640	-0.1588	108	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	PLSCR4	ENSG00000114698	ENST00000493382	-0.2154	176	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	CLIP4	ENSG00000115295	ENST00000401617	-0.2772	198	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	CLIP4	ENSG00000115295	ENST00000404424	-0.2406	118	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	AKT3	ENSG00000117020	ENST00000366540	-0.3936	500	-	UCEC
ENSG00000275234	ENST00000615487	FAM126A	ENSG00000122591	ENST00000409763	-0.1199	562	-	BRCA
ENSG00000275234	ENST00000615487	MACF1	ENSG00000127603	ENST00000484793	-0.1985	545	-	UCEC
ENSG00000275234	ENST00000615487	FGL2	ENSG00000127951	ENST00000248598	-0.1683	1	-	UCEC,BRCA
ENSG00000275234	ENST00000615487	SYT11	ENSG00000132718	ENST00000368324	-0.1332	1	-	UCEC

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000275234	CTD-2396E7.11,hsa-mir-378a,SSH3	KICH,CHOL,BRCA,THYM,LIHC
ENSG00000275234	CTD-2396E7.11,hsa-mir-378a,VEZF1	CHOL,BRCA,UCS,THYM,LIHC
ENSG00000275234	CTD-2396E7.11,hsa-mir-378a,KIAA1522	CHOL,BRCA,UCS,THYM,LIHC
ENSG00000275234	CTD-2396E7.11,hsa-mir-378a,CD46	CHOL,BRCA,UCS,THYM,LIHC
ENSG00000275234	CTD-2396E7.11,hsa-mir-378a,BCL9	KICH,CHOL,BRCA,UCS,THYM,LIHC
ENSG00000275234	CTD-2396E7.11,hsa-mir-378a,TMC4	CHOL,BRCA,UCS,THYM,LIHC
ENSG00000275234	CTD-2396E7.11,hsa-mir-378a,TMEM87B	CHOL,BRCA,UCS,THYM,LIHC
ENSG00000275234	CTD-2396E7.11,hsa-mir-378a,SPOPL	CHOL,BRCA,UCS,THYM,LIHC
ENSG00000275234	CTD-2396E7.11,hsa-mir-378a,GOLPH3L	CHOL,BRCA,UCS,THYM,LIHC
ENSG00000275234	CTD-2396E7.11,hsa-mir-378a,CRB3	KICH,CHOL,BRCA,THYM,LIHC
ENSG00000275234	CTD-2396E7.11,hsa-mir-378a,KIAA0319L	CHOL,BRCA,UCS,THYM,LIHC
ENSG00000275234	CTD-2396E7.11,hsa-mir-378a,RAB25	KICH,CHOL,UCS,THYM,LIHC

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000275234.1	ENST00000615487.1	118	35	391

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential