 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | SINHCAF,CUL4B,RPAP2,OSGIN2,REPS1,FAM126B,IPO8,RYBP,MED17,FANCL,ESCO1,TMX3,FGD6,ODF2L,CSNK1G3,CDK13,DPY19L3,ANGEL2,WDFY1,ANAPC1,SMURF2,LCORL,NAA15,RBM7,CEP57,MYSM1,N4BP2,PAWR,FAM214A,FGD4,GXYLT1,NEMP2,ARID2,WASHC4,GXYLT2,SPICE1,PDS5A,PPWD1,DMTF1,AZIN1,RSBN1,TAF1D,PPAT,PRPF40A,SASS6,RBM27,ATG12,PHF10,PICALM,PIBF1,AHI1,INO80D,SENP1,SAMD8,ATRX,FEZ2,ASCC3,TASP1,YARS2,GPATCH2,RUNX1,SLX4IP,GABPA,SLC19A2,SF3B1,TET3,TULP3,BCLAF1,METTL21A,BARD1,PARP11,RPS6KB1,RASAL2,KLHL28,GCFC2,THOC1,PAN3,CCDC14,NUP58,MED28,MYO9A,UBA6,STRBP,CCDC77,DCAF16,ITPR2,PSME4,ZZZ3,ZMYM5,SIKE1,MINDY2,FBXO22,DCBLD2,TBK1,RLIM,KNTC1,S100PBP,MPHOSPH9,CCNT2,CREB1,MEX3C,USP24,KDM5A,AP1AR,CHD6,BRWD3,RIMKLB,SIAH1,BRWD1,ARL13B,XIAP,PURB,ADNP,ATP13A3,MYEF2,PPIL4,CCNH,RBM25,ORC4,DNAJB14,PUS7L,ARID4B,RO60,TBCK,PTAR1,FUBP1,NF1,TUT4,SP4,CADM1,UBE3A,PELI1,ANAPC10,KANSL1L,UACA,ARL5A,TENT4B,THOC2,TRIM33,SLC20A1,RESF1,RAB22A,ETNK1,LRP6,HS2ST1,GABPB1,ATP11C,SMC5,SLC5A3,BCL10,CHD4,RFX7,FMR1,LCOR,RAD52,MAP4K5,PRKD3,MBD5,CTDSPL2,MAP3K7,RSRC2,DOCK7,ATAD2B,TTC21B,CEP290,RBM41,ZNHIT6,OTUD6B,NAPB,NAA25,PAXBP1,SLC38A9,TLK1,GMCL1,MEX3A,MDN1,C16orf87,UBFD1,C2orf49,GOLT1B,OSBPL10,PLEKHA3,PHIP,CHD9,BOD1L1,BRAF,RSPRY1,KRR1,RAB5A,RBM45,NFXL1,BACH1,CHD2,AGO3,SPATA5,ORC2,VEZT,GPR180,PMS1,FBXO11,DENND1B,WDR36,RPE,TIA1,ANKLE2,MOSMO,ZNF720,SLC39A10,SKIL,TOP1,QKI,PAFAH1B2,ACP6,TMTC3,ROCK2,CBR4,SCAF11,BMPR2,DDX11,ERGIC2,GPBP1,R3HDM1,PPP4R2,NDUFAF7,BICD1,TRMT13,STAG2,PDK1,PIKFYVE,FASTKD2,SLC30A6,PUM2,XPO1,CDK17,VPS54,AASDHPPT,RBMS1,MBTD1,ZNF43,RAD18,CBX5,SP3,EPM2AIP1,CEP170,ZNF84,BAZ2B,ARL5B,CHD1,WDR33,PEX5,MAPKAPK5,SMYD3,REV1,NEDD1,SLC10A7,DUSP6,EIF2AK2,ATF7IP,NR2C1,CERS5,NOC3L,ITGB8,SELENOI,SFPQ,MARCHF6,SOS1,MED13,CUL3,KBTBD2,ZMYM1,CD2AP,ATF2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | SLC38A9,ANGEL2,RBM27,ZC3H11A,TRIM33,MOB1B,PAFAH1B2,CDK13,RASAL2,ATF7IP,LIMS1,SOCS5,KDM5A,CNOT6,CTTNBP2NL,PTPN12,CCDC77,S100PBP,PPWD1,PAPD5,OTUD6B,ORC2,REST,XIAP,CCDC18,MPHOSPH9,RLIM,CBFB,TMX3,WDR43,TLK1,FNDC3B,PPIL4,BRWD3,PRKD3,RSPRY1,SIKE1,ARL13B,SPICE1,ACP6,C16orf87,PIK3C3,RIF1,MED28,GXYLT2,MRPL42 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SLC25A11,CRAT,NDUFS7 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000274964 | ENSG00000057019 | DCBLD2 | CESC,GBM,LUAD,PAAD,THCA | GBM | | | ENSG00000274964 | ENSG00000139146 | SINHCAF | CESC,ESCA,LAML,OV,PAAD,PRAD,STAD,TGCT,THCA,UCEC,UCS | STAD | | | ENSG00000274964 | ENSG00000182985 | CADM1 | CESC,GBM,PCPG,SKCM,THCA | PCPG | | | ENSG00000274964 | ENSG00000139131 | YARS2 | ESCA,LAML,LUSC,OV,PAAD,STAD,TGCT,UCS | LUSC | | | ENSG00000274964 | ENSG00000139350 | NEDD1 | ESCA,GBM,KIRC,LAML,LUAD,PAAD | GBM | | | ENSG00000274964 | ENSG00000196950 | SLC39A10 | ESCA,KIRC,LAML,LUAD,PAAD,STAD,TGCT,UCEC,UCS | STAD | | | ENSG00000274964 | ENSG00000213047 | DENND1B | KIRC,LAML,LUAD,PCPG,UCEC | PCPG | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000274964 | ENSG00000123636 | BAZ2B | ENSG00000171681 | ATF7IP | 6 | KIRC,LAML,LUAD,OV,SKCM,UCEC | | ENSG00000274964 | ENSG00000123636 | BAZ2B | ENSG00000073614 | KDM5A | 5 | KIRC,LAML,LUAD,SKCM,UCEC | | ENSG00000274964 | ENSG00000123636 | BAZ2B | ENSG00000101966 | XIAP | 5 | KIRC,LAML,LUAD,SKCM,UCEC | | ENSG00000274964 | ENSG00000123636 | BAZ2B | ENSG00000080345 | RIF1 | 5 | KIRC,LAML,LUAD,SKCM,UCEC |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000274964.1 | ENST00000622688.1 | 50 | 430 | 278 |
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