 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000274561 | ENST00000613178 | exon_skip_62840 | chr11:70421469-70421580 | -13.22 | -0.1349 | CTTN | ENST00000301843 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000274561 | ENST00000613178 | exon_skip_74009 | chr11:64773429-64773505 | -10.32 | -0.2243 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_95407 | chr12:95040475-95040597 | -9.93 | -0.1024 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_111863 | chr14:23565815-23565892 | -9.76 | -0.1319 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_370518 | chr22:50247691-50247776 | -9.69 | -0.1309 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_382458 | chr3:38131595-38131638 | -5.50 | -0.1833 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_53559 | chr10:101793912-101793998 | -7.55 | -0.1987 | OGA | ENST00000361464 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_111870 | chr14:23566561-23566686 | -9.63 | -0.1356 | AP1G2 | ENST00000397120 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_114365 | chr14:74290026-74290118 | -11.04 | -0.1673 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_139422 | chr16:89114338-89114487 | -11.02 | -0.1469 | ACSF3 | ENST00000317447,ENST00000406948 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_287763 | chr17:28884224-28884315 | -11.51 | -0.2131 | FLOT2 | ENST00000394908 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_335558 | chr2:240596680-240596942 | -15.71 | -0.1001 | CAPN10 | ENST00000391984 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_370525 | chr22:50250426-50250523 | -11.70 | -0.1360 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_374497 | chr3:49999439-49999513 | -8.10 | -0.1246 | RBM6 | ENST00000266022 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_431827 | chr4:109696409-109696486 | -5.85 | -0.1773 | CASP6 | ENST00000265164 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_436035 | chr5:79656957-79657001 | -5.96 | -0.4967 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000274561 | ENST00000613178 | exon_skip_479346 | chr7:124829253-124829342 | -5.70 | -0.1056 | POT1 | ENST00000357628 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000274561 | hsa-mir-378a | ENST00000613178 | chr17:68131841-68131904 | 147.00 | -60.50 | 59 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000274561 | RP11-147L13.12,hsa-mir-378a,SMARCE1 | TGCT,CHOL,ACC,GBM,KIRP | | ENSG00000274561 | RP11-147L13.12,hsa-mir-378a,TASOR | TGCT,CHOL,ACC,GBM,KIRP | | ENSG00000274561 | RP11-147L13.12,hsa-mir-378a,VMAC | TGCT,CHOL,ACC,GBM,KIRP | | ENSG00000274561 | RP11-147L13.12,hsa-mir-378a,ARID4B | TGCT,CHOL,ACC,GBM,KIRP | | ENSG00000274561 | RP11-147L13.12,hsa-mir-378a,FAM228B | TGCT,CHOL,ACC,GBM,KIRP | | ENSG00000274561 | RP11-147L13.12,hsa-mir-378a,SMAD4 | TGCT,CHOL,ACC,GBM,KIRP | | ENSG00000274561 | RP11-147L13.12,hsa-mir-378a,DENND6A | TGCT,CHOL,ACC,GBM,KIRP | | ENSG00000274561 | RP11-147L13.12,hsa-mir-378a,NUMA1 | TGCT,CHOL,ACC,GBM,KIRP | | ENSG00000274561 | RP11-147L13.12,hsa-mir-378a,CHST14 | TGCT,CHOL,ACC,GBM,KIRP | | ENSG00000274561 | RP11-147L13.12,hsa-mir-378a,WBP1 | TGCT,CHOL,ACC,GBM,KIRP | | ENSG00000274561 | RP11-147L13.12,hsa-mir-378a,CNP | TGCT,CHOL,ACC,GBM,KIRP | | ENSG00000274561 | RP11-147L13.12,hsa-mir-378a,ATAT1 | TGCT,CHOL,ACC,GBM,KIRP | | ENSG00000274561 | RP11-147L13.12,hsa-mir-378a,BAZ2B | TGCT,CHOL,ACC,GBM,KIRP | | ENSG00000274561 | RP11-147L13.12,hsa-mir-378a,PIGM | TGCT,CHOL,ACC,GBM,KIRP |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000274561.1 | ENST00000613178.1 | 145 | 669 | 232 |
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