 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | DDX11,RBM19,PHF1,RBM6,ZBED5,HMGN3,NOP2,ZC3H8,GLI4,RBM39,CENPT,TTC14,ZGLP1,HSF4,RBM5,IRF3,CIRBP,SUGP1,DDX56,ZNF44,MZF1,SGSM2,NRF1,ZXDC,ZNF84,RBM4B,DMTF1,BAZ2B,TIGD1,RBM26,RBM45,CPSF1,DDX51,TRA2A,ZBTB3,PCBP4,THAP3,ZNF69,DHX34,SRSF2,HINFP,ZGPAT,FIZ1,NR2C1,DDX55,ZMAT1,ZNF83,SFPQ,ZFP14,USF1,CXXC1,NSUN6,RNPC3,SNRPA,NXF1,SAFB2,THOC1,RBM33,ZNF18,DDX17,ZNF10 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | DDX17,ZFP14,MZF1,ZNF18,E4F1,CXXC1,ZMAT1,THAP7,SRSF5,ZNF69,RBM19,ZNF83,RBM6,TRA2A,THAP3,CIRBP | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SMAD1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000274341 | ENST00000620729 | exon_skip_114365 | chr14:74290026-74290118 | -13.28 | -0.1897 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000274341 | ENST00000620729 | exon_skip_382458 | chr3:38131595-38131638 | -5.20 | -0.1405 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000274341 | ENST00000620729 | exon_skip_387016 | chr3:121788283-121788432 | -8.17 | -0.1075 | IQCB1 | ENST00000310864 | Frame-shift | | ENSG00000274341 | ENST00000620729 | exon_skip_41813 | chr10:68337857-68337996 | -12.41 | -0.1394 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000274341 | ENST00000620729 | exon_skip_53559 | chr10:101793912-101793998 | -10.34 | -0.1309 | OGA | ENST00000361464 | Frame-shift | | ENSG00000274341 | ENST00000620729 | exon_skip_66482 | chr11:126274926-126275021 | -11.79 | -0.2876 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000274341 | ENST00000620729 | exon_skip_95407 | chr12:95040475-95040597 | -10.98 | -0.1193 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000274341 | ENST00000620729 | exon_skip_133217 | chr16:8635038-8635079 | -6.90 | -0.1816 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000274341 | ENST00000620729 | exon_skip_370518 | chr22:50247691-50247776 | -10.92 | -0.2229 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000274341 | ENST00000620729 | exon_skip_470226 | chr7:103307595-103307708 | -16.59 | -0.1843 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000274341 | ENST00000620729 | exon_skip_511212 | chrX:71555189-71555385 | -18.18 | -0.1638 | OGT | ENST00000373719 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_322143 | ENSG00000274341.1 | chr17 | 32408017 | + | lincRNA | RP11-227G15.10 | ENST00000620729.1 | lincRNA | RP11-227G15.10-001 |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000274341 | LncEditing_322143 | -5.934106e-01 | 5.813514e-03 | 1.466741e-02 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000274341.1 | ENST00000620729.1 | 37 | 143 | 30 |
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