 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RPAP2,VAMP1,HELQ,CPLANE1,XRN1,ERI2,MFSD8,BRD1,MZF1,TTC31,MAPK8IP3,CCDC88A,SUGP2,N4BP2L2,DMTF1,SLF2,ANKRD44,ZDHHC23,HLTF,IRAK4,ZFP14,CENATAC,WDR5B,TP53INP1,ST7L,MSANTD2,TUBGCP6,CCDC14,MYO9A,ARAP2,THAP2,CLK4,COMMD2,ZUP1,FAM133B,ZBED5,TTC14,KNTC1,CREB1,SPG7,SLC33A1,ATR,SIAH1,SCYL3,ECHDC2,OGT,PDE7A,CLK2,MYEF2,RAPGEF6,ARID4B,MPLKIP,POLG2,PTAR1,TUT4,RBM15,IFT81,BBIP1,THOC2,CLK1,TIMMDC1,ATXN7,GABPB1,RABL2A,RPAIN,OFD1,ACYP1,FBXO38,TMEM39A,IFT172,HELLS,FOXJ3,PURA,XPNPEP3,MBD5,RSRC2,NAPB,NAA25,NEMP1,EML4,SETD5,ZFP62,MIS18BP1,GON4L,SOCS4,C9orf72,ZBED8,ORMDL1,CHD9,BRAF,YTHDC1,TOPBP1,MBD4,AGO3,ORC2,SRSF2,C1orf52,PHC3,POGLUT1,LRRC37B,INTS2,SUPT20H,RSRC1,CCDC191,ANKRD28,FIGNL1,NR2C2,PAN2,R3HDM1,BICD1,PDK1,PKN2,SLC30A6,SNX4,METTL4,ZFC3H1,MBTD1,DMAC2L,SEPSECS,IFT122,ANKRD13C,VCPKMT,CEP192,EIF4A1,PALB2,ZNF69,ATF7IP,SLF1,MARCHF6,SWT1,HERC4,CASTOR3,TMEM168,PIK3R4,ATM,FANCL,TTC17,CDK13,SH2B1,SMURF2,LCORL,CEP57,UBE2G2,NEMP2,SPICE1,WDR53,PPWD1,RELCH,SLC30A7,GSK3B,SASS6,ATG12,PIBF1,AHI1,ZNF70,INO80D,AGK,ASTE1,CRLF3,KPNA1,CASP2,KRIT1,GLMN,GCFC2,THOC1,UBA6,ACAP2,PHF12,DENND6A,ZMYM5,TAMM41,AP5M1,RC3H1,CBLB,OPA1,TRIM13,SMG1,FGFR1OP2,BCLAF3,DNAJB14,PUS7L,MCM9,IFT80,CEP83,LIN54,UBN2,C17orf75,LRIG2,ABHD18,RTTN,SLC5A3,REV3L,SMCHD1,NBPF11,DYNLT2,CEP70,ACIN1,ZC3H8,DGKE,ENOSF1,DZIP3,RAB2B,ANKRD49,PAXBP1,SLC38A9,CCDC125,COA1,TADA2A,FNBP4,BOD1L1,PHF11,RSRP1,CHD2,CLEC2D,ATG14,GOLGB1,ZNF720,HEMK1,UPF3B,LINS1,ANKRD26,GSAP,CLHC1,PUS10,GPBP1,C2orf68,MRE11,FAM120C,NDUFAF7,RBM6,TRMT13,ZNF862,TTBK2,CCDC82,ARID4A,VPS54,CCDC142,SMAD4,RYK,EPM2AIP1,CHD1,PSME3IP1,WDR27,HECTD4,KHDC4,NCK1,TFDP2,HPS4,PNISR,GEN1,SFPQ,CEPT1,USP45,CARD8,DMXL2,LMLN,ATAD2B,ZNF10,FAM126B,MED17,RNF149,ESCO1,CEP63,TMX3,ANGEL2,MDM1,MYSM1,FAM214A,N4BP2,MED13L,ARID2,TAF1D,KATNBL1,DBR1,SPIN3,TBRG1,TASP1,SLX4IP,KLHDC1,GATAD1,CCNL2,TET3,PRR14L,RNPC3,C14orf28,BARD1,ANKRD10,RPS6KB1,UBXN7,LRCH3,CNOT4,KIAA2026,MSL3,KMT2C,SIKE1,MPHOSPH9,CCNT2,PTCD3,KAT2A,ZNF91,CHD6,BRWD1,CSTF3,RBM26,PLA2G6,PURB,C12orf65,ATP13A3,RBM25,FBXW7,RO60,TBCK,ZFP30,SP4,SETD6,KANSL1L,POLI,PRPF39,ITSN2,KIAA0753,ATP8A1,DCAF17,EPC1,LCOR,DDHD1,PABIR2,ZNF717,MAP4K5,ATXN3,FBXL20,HEXIM2,CEP44,CENPC,HSF4,RBM41,ARGLU1,YJEFN3,NEPRO,POLQ,CCNL1,C10orf88,ANKRA2,C2orf49,PLEKHA3,CELF1,TMEM161B,KRR1,RBM45,RBL1,SPATA5,R3HDM2,PMS1,DCUN1D1,TIA1,ZNF83,PPP4R3A,MOSMO,KANSL1,NSUN6,C5orf34,RFX3,ZNF8,DNMT3A,HAUS6,PTPN2,ERCC3,USP48,GRIPAP1,PARP8,HELZ,ELF2,CRAMP1,LUC7L,ZNF43,PNN,COA5,LUC7L2,CCAR1,TMCC1,UBE2V1,CENPJ,CASP8,MAPKAPK5,TPP2,REV1,HINFP,NR2C1,SOS1,RUFY2,WBP1,TEPSIN,RBM33,NOL8,CFAP44,AGAP6,HACE1,GABPB2,RBM39,ODF2L,C21orf91,GPATCH8,PGS1,MSL2,STAG1,ZCCHC8,TBL1XR1,NRF1,ZXDC,ANKRD13A,PIGL,ZC3H7A,CSAD,KIAA0895L,ATRX,MAP3K2,GPATCH2,RBM28,DCAF8,ABCA5,PHYKPL,SF3B1,RUFY3,PIK3CB,OGA,ZFP69,PAN3,C2orf42,DCAF16,ACVR2B,SUPT7L,MORC3,RICTOR,CENPT,OSGEPL1,PEX1,S100PBP,SCLT1,METTL25,FAM76B,POGZ,ANAPC7,YAF2,BRWD3,AKAP10,RBMX,RBM4B,EXOG,YEATS2,TAF1C,ADNP,TEFM,TCEANC2,FUBP1,NF1,PRIMPOL,THAP9,EZH1,LRP6,THAP6,SS18L1,ELMOD3,DDX17,MAP3K13,SENP7,CHFR,RSBN1L,MTRF1,FMR1,RAD52,CEP43,EPB41,DYRK1A,CTDSPL2,CEP290,GTF2E1,WSB1,GPALPP1,MAP4K3,PHIP,C12orf76,FAM228B,DLG1,USP21,ABCC5,ELK4,TIGD1,NSD2,TRIM52,NCBP3,LRRC58,USF3,CRYZL1,TTC13,MBD6,STK36,TTC32,ZMAT1,GOLGA8B,HP1BP3,ALPK1,STRADA,VPS13C,ZFX,CBR4,ZNF18,TEX10,GOLGA8A,PPHLN1,SETD4,CNOT2,RBM48,PIKFYVE,AARSD1,DUSP28,PUM2,RBM5,USP3,DHX36,NKTR,CEP162,ZFP28,RAD18,ZCCHC7,ZNF17,TTLL3,CRBN,TUBE1,CEP170,ZNF84,BAZ2B,CCP110,PARP6,WDR33,TRA2B,PIAS2,ASXL1,TSC1,NSUN3,USPL1,CCDC112,PRPF4B,RABL2B,TRAPPC2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000273486 | ENSG00000106144 | CASP2 | BRCA,CESC,KIRC,KIRP,LAML | CESC | | | ENSG00000273486 | ENSG00000119969 | HELLS | BRCA,CESC,LAML,THYM,UCEC | CESC | | | ENSG00000273486 | ENSG00000163611 | SPICE1 | BRCA,CESC,KIRC,KIRP,LAML,LUAD,LUSC,PRAD,UCEC,UCS | CESC | | | ENSG00000273486 | ENSG00000163781 | TOPBP1 | BRCA,CESC,ESCA,KIRC,KIRP,LUAD,LUSC,PRAD,THYM,UCEC,UCS | CESC | | | ENSG00000273486 | ENSG00000175054 | ATR | BRCA,CESC,ESCA,KIRC,KIRP,LAML,LUAD,LUSC,OV,PRAD,UCEC,UCS | CESC | | | ENSG00000273486 | ENSG00000175455 | CCDC14 | BRCA,CESC,ESCA,KIRC,KIRP,LAML,LGG,LUAD,LUSC,OV,PRAD,THYM,UCEC,UCS | CESC | | | ENSG00000273486 | ENSG00000178295 | GEN1 | BRCA,CESC,LUAD,LUSC,THYM,UCEC | CESC | | | ENSG00000273486 | ENSG00000184307 | ZDHHC23 | BRCA,CESC,KIRP,LUAD,OV,PRAD,UCEC | CESC | | | ENSG00000273486 | ENSG00000184445 | KNTC1 | BRCA,CESC,ESCA,KIRC,KIRP,LAML,LUAD,LUSC,THYM,UCEC | CESC | | | ENSG00000273486 | ENSG00000051341 | POLQ | CESC,LUSC,THYM,UCEC,UCS | CESC | | | ENSG00000273486 | ENSG00000051382 | PIK3CB | CESC,ESCA,LUAD,UCEC,UCS | CESC | | | ENSG00000273486 | ENSG00000071794 | HLTF | CESC,ESCA,LAML,LUAD,LUSC,PRAD,UCEC,UCS | CESC | | | ENSG00000273486 | ENSG00000083093 | PALB2 | CESC,KIRC,LAML,LUAD,PRAD | CESC | | | ENSG00000273486 | ENSG00000149346 | SLX4IP | CESC,KIRC,KIRP,LAML,LUAD,PRAD,THYM,UCEC | CESC | | | ENSG00000273486 | ENSG00000174891 | RSRC1 | CESC,ESCA,LAML,LUSC,UCEC | CESC | | | ENSG00000273486 | ENSG00000185798 | WDR53 | CESC,ESCA,KIRP,THYM,UCS | CESC | | | ENSG00000273486 | ENSG00000196678 | ERI2 | CESC,KIRC,KIRP,LGG,LUAD,PRAD,UCEC | CESC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000273486.1 | ENST00000609553.1 | 100 | 2538 | 2840 |
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