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lncRNA: ENSG00000273344

Summary for PAXIP1-DT

Gene summary

Gene information	Ensembl ID	ENSG00000273344
	Gene symbol	PAXIP1-DT
	Gene name	PAXIP1 divergent transcript
	HGNC	27328
	Entrez ID	202781
	Gene type	lincRNA
	Synonyms	07q36.2\|PAXIP1-DT\|PAXIP1-AS1
	UniProtAcc

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Structure and expression level for PAXIP1-DT

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000273344	5.130468e-01	3.136763e-04	CHOL	6.960468e-04
ENSG00000273344	3.054802e-01	2.296135e-13	PRAD	1.238904e-12

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lncRNA-Protein interaction for PAXIP1-DT

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for PAXIP1-DT

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ZNF30,ILF3,GLI4,RBM39,MYPOP,CIRBP,TIGD5,OVOL2,MZF1,NRF1,AKAP8,ZNF2,ZXDC,SUGP2,TRUB2,DMTF1,HES6,ZNF77,RBM28,ZNF74,TBP,DDX55,RNPC3,SAFB2,THOC1,CNOT4,CHTOP,TFAP4,LSM5,ZBED5,CENPT,TTC14,PCBP2,SUGP1,SRSF4,RBMX,RBM4B,U2AF2,CSTF3,TIGD6,RBM26,TCFL5,CPSF1,RFX2,RNPS1,PURB,GZF1,MYEF2,MBD1,DHX34,CPSF4,SP4,CPSF7,THAP9,CXXC1,MNX1,THAP6,PATZ1,DDX17,E2F5,PUS7,ZNF22,PHF1,THYN1,ZC3H8,TTF1,HSF4,THOC6,DZIP3,OTX1,ILF2,ZFP62,ZNF48,PARN,SGSM2,WIZ,SCMH1,REXO4,TIGD1,RBM45,DDX51,E2F4,MBD4,IRX5,UNC50,APEX1,SRSF2,MBD6,DDX31,MYNN,ZMAT1,ZNF83,NSUN6,ZNF3,NXF1,ZNF18,NKRF,EIF2D,DDX11,GPBP1,RBM6,HMGN3,ZNF14,KHDC1,RBM48,E2F1,GMEB2,NOL3,PUM2,RBM5,NFYB,ZNF43,ZNF84,DDX42,RXRB,TRA2A,ZNF69,SRSF7,HINFP,XPA,NR2C1,THOC7,TFDP2,ZFP3,SFPQ,RBM33,NOL8,ZNF10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

ZNF48,HSF4,MZF1,NOL3,RBM5,U2AF2,ZMAT1,TIGD1,ZNF14,TIGD6,TFAP4,MYNN,ZNF69,ZNF3,ZNF83,IRX5,DHX30,RBM6,EIF2D,ZNF30,PCBP2,CIRBP

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for PAXIP1-DT

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000273344	ENST00000608317	exon_skip_435063	chr5:66075023-66075230	-18.76	-0.1025	ERBIN	ENST00000284037	In-frame
ENSG00000273344	ENST00000608317	exon_skip_1234	chr1:11658532-11658628	-21.22	-0.2384	FBXO44	ENST00000251547,ENST00000376770	In-frame
ENSG00000273344	ENST00000608317	exon_skip_44998	chr10:110132304-110132400	-11.58	-0.1259	ADD3	ENST00000356080	In-frame
ENSG00000273344	ENST00000608317	exon_skip_386291	chr3:108050577-108050602	-6.96	-0.4640	CD47	ENST00000361309	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_60345	chr11:63903985-63904147	-32.16	-0.2474	MARK2	ENST00000402010	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000273344	ENST00000608317	exon_skip_106783	chr14:55673171-55673255	-7.85	-0.1189	KTN1	ENST00000395314	In-frame
ENSG00000273344	ENST00000608317	exon_skip_132355	chr16:1786756-1786955	-35.76	-0.2263	NUBP2	ENST00000262302	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_370518	chr22:50247691-50247776	-20.71	-0.2799	HDAC10	ENST00000216271	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_432617	chr4:151144219-151144288	-10.29	-0.1979	SH3D19	ENST00000304527,ENST00000409252	In-frame
ENSG00000273344	ENST00000608317	exon_skip_38175	chr1:234398381-234398553	-16.37	-0.1121	TARBP1	ENST00000040877	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_41813	chr10:68337857-68337996	-20.01	-0.1471	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_53559	chr10:101793912-101793998	-12.85	-0.1736	OGA	ENST00000361464	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_139422	chr16:89114338-89114487	-28.33	-0.1995	ACSF3	ENST00000317447,ENST00000406948	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_290158	chr17:42953723-42953778	-8.73	-0.1940	AARSD1	ENST00000427569	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_313557	chr19:5786748-5786845	-22.45	-0.2580	DUS3L	ENST00000309061	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_374497	chr3:49999439-49999513	-15.88	-0.2335	RBM6	ENST00000266022	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_374551	chr3:50100531-50100605	-11.32	-0.1856	RBM5	ENST00000347869	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_380242	chr3:186784961-186785101	-17.07	-0.1985	EIF4A2	ENST00000323963	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_382458	chr3:38131595-38131638	-10.46	-0.4755	ACAA1	ENST00000333167	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_470226	chr7:103307595-103307708	-12.67	-0.1348	PMPCB	ENST00000249269	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_374581	chr3:50110378-50110463	-17.30	-0.3035	RBM5	ENST00000347869	Frame-shift
ENSG00000273344	ENST00000608317	exon_skip_80777	chr12:26960514-26960628	-14.57	-0.1443	FGFR1OP2	ENST00000229395	In-frame
ENSG00000273344	ENST00000608317	exon_skip_1717	chr1:15721328-15721388	-10.49	-0.3617	PLEKHM2	ENST00000375799	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000273344	hsa-mir-139	ENST00000608317	chr7:155004361-155004428	194.00	-56.80	57	NA
ENSG00000273344	hsa-mir-139	ENST00000608317	chr7:155004435-155004499	175.00	-69.36	53	NA
ENSG00000273344	hsa-mir-139	ENST00000608317	chr7:155003597-155003666	172.00	-70.05	64	NA
ENSG00000273344	hsa-mir-139	ENST00000608317	chr7:155004523-155004594	171.00	-62.87	68	NA
ENSG00000273344	hsa-mir-139	ENST00000608317	chr7:155005599-155005672	168.00	-59.02	72	NA
ENSG00000273344	hsa-mir-139	ENST00000608317	chr7:155003857-155003924	167.00	-67.10	63	NA
ENSG00000273344	hsa-mir-139	ENST00000608317	chr7:155005147-155005214	160.00	-56.45	69	NA
ENSG00000273344	hsa-mir-139	ENST00000608317	chr7:155004706-155004772	152.00	-57.47	65	NA
ENSG00000273344	hsa-mir-139	ENST00000608317	chr7:155003470-155003536	150.00	-66.20	58	NA
ENSG00000273344	hsa-mir-139	ENST00000608317	chr7:155003991-155004059	148.00	-63.41	68	NA
ENSG00000273344	hsa-mir-139	ENST00000608317	chr7:155004294-155004373	148.00	-73.66	69	NA
ENSG00000273344	hsa-mir-139	ENST00000608317	chr7:155003699-155003772	143.00	-83.36	71	NA
ENSG00000273344	hsa-mir-139	ENST00000608317	chr7:155003797-155003861	140.00	-71.81	66	NA
ENSG00000273344	hsa-mir-22	ENST00000608317	chr7:155003530-155003608	173.00	-85.74	81	NA
ENSG00000273344	hsa-mir-22	ENST00000608317	chr7:155003799-155003891	172.00	-93.98	89	NA
ENSG00000273344	hsa-mir-22	ENST00000608317	chr7:155005063-155005141	166.00	-81.55	84	NA
ENSG00000273344	hsa-mir-22	ENST00000608317	chr7:155003449-155003495	159.00	-69.58	46	NA
ENSG00000273344	hsa-mir-22	ENST00000608317	chr7:155003683-155003776	157.00	-100.99	92	NA
ENSG00000273344	hsa-mir-22	ENST00000608317	chr7:155004674-155004755	153.00	-67.10	74	NA
ENSG00000273344	hsa-mir-22	ENST00000608317	chr7:155004301-155004375	152.00	-82.87	81	NA
ENSG00000273344	hsa-mir-22	ENST00000608317	chr7:155004758-155004841	150.00	-69.05	85	NA
ENSG00000273344	hsa-mir-22	ENST00000608317	chr7:155003936-155004019	146.00	-65.55	81	NA
ENSG00000273344	hsa-mir-22	ENST00000608317	chr7:155004401-155004487	146.00	-77.31	81	NA
ENSG00000273344	hsa-mir-22	ENST00000608317	chr7:155004976-155005062	146.00	-65.70	79	NA
ENSG00000273344	hsa-mir-22	ENST00000608317	chr7:155005416-155005499	140.00	-67.37	82	NA
ENSG00000273344	hsa-mir-511	ENST00000608317	chr7:155005610-155005703	192.00	-61.56	93	NA
ENSG00000273344	hsa-mir-511	ENST00000608317	chr7:155004668-155004754	187.00	-59.18	86	NA
ENSG00000273344	hsa-mir-511	ENST00000608317	chr7:155005255-155005347	187.00	-65.48	87	NA
ENSG00000273344	hsa-mir-511	ENST00000608317	chr7:155004071-155004153	182.00	-59.01	88	NA
ENSG00000273344	hsa-mir-511	ENST00000608317	chr7:155004987-155005084	165.00	-65.78	96	NA
ENSG00000273344	hsa-mir-511	ENST00000608317	chr7:155005418-155005510	165.00	-61.39	86	NA
ENSG00000273344	hsa-mir-511	ENST00000608317	chr7:155004760-155004851	160.00	-59.47	87	NA
ENSG00000273344	hsa-mir-511	ENST00000608317	chr7:155003534-155003631	156.00	-92.19	95	NA
ENSG00000273344	hsa-mir-511	ENST00000608317	chr7:155005525-155005614	147.00	-57.51	86	NA
ENSG00000273344	hsa-mir-511	ENST00000608317	chr7:155004239-155004328	145.00	-60.37	71	NA
ENSG00000273344	hsa-mir-511	ENST00000608317	chr7:155005112-155005206	144.00	-71.70	91	NA
ENSG00000273344	hsa-mir-1228	ENST00000608317	chr7:155004339-155004416	189.00	-89.28	77	NA
ENSG00000273344	hsa-mir-1228	ENST00000608317	chr7:155003907-155003982	181.00	-68.50	54	NA
ENSG00000273344	hsa-mir-1228	ENST00000608317	chr7:155003514-155003600	180.00	-101.67	81	NA
ENSG00000273344	hsa-mir-1228	ENST00000608317	chr7:155003747-155003819	178.00	-90.90	71	NA
ENSG00000273344	hsa-mir-1228	ENST00000608317	chr7:155003834-155003911	164.00	-82.78	74	NA
ENSG00000273344	hsa-mir-1228	ENST00000608317	chr7:155003633-155003712	160.00	-90.71	72	NA
ENSG00000273344	hsa-mir-1228	ENST00000608317	chr7:155005127-155005204	160.00	-78.21	77	NA
ENSG00000273344	hsa-mir-1228	ENST00000608317	chr7:155004162-155004246	159.00	-75.99	80	NA
ENSG00000273344	hsa-mir-1228	ENST00000608317	chr7:155004502-155004582	159.00	-90.68	74	NA
ENSG00000273344	hsa-mir-1228	ENST00000608317	chr7:155005314-155005388	141.00	-68.53	69	NA
ENSG00000273344	hsa-mir-326	ENST00000608317	chr7:155003830-155003919	196.00	-102.29	95	NA
ENSG00000273344	hsa-mir-326	ENST00000608317	chr7:155004472-155004570	194.00	-107.88	90	NA
ENSG00000273344	hsa-mir-326	ENST00000608317	chr7:155003492-155003592	187.00	-116.39	98	NA
ENSG00000273344	hsa-mir-326	ENST00000608317	chr7:155003732-155003824	187.00	-113.49	91	NA
ENSG00000273344	hsa-mir-326	ENST00000608317	chr7:155004325-155004405	187.00	-100.36	93	NA
ENSG00000273344	hsa-mir-326	ENST00000608317	chr7:155004153-155004254	179.00	-91.32	82	NA
ENSG00000273344	hsa-mir-326	ENST00000608317	chr7:155004684-155004767	175.00	-83.68	86	NA
ENSG00000273344	hsa-mir-326	ENST00000608317	chr7:155003970-155004057	167.00	-96.56	92	NA
ENSG00000273344	hsa-mir-326	ENST00000608317	chr7:155005089-155005198	160.00	-110.22	105	NA
ENSG00000273344	hsa-mir-326	ENST00000608317	chr7:155003603-155003702	158.00	-112.00	94	NA
ENSG00000273344	hsa-mir-326	ENST00000608317	chr7:155004966-155005065	157.00	-80.28	98	NA
ENSG00000273344	hsa-mir-326	ENST00000608317	chr7:155005603-155005692	156.00	-87.69	73	NA
ENSG00000273344	hsa-mir-326	ENST00000608317	chr7:155005356-155005467	155.00	-88.20	110	NA

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Variants for PAXIP1-DT

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000273344	PAXIP1-DT,hsa-mir-511,IRGQ	CHOL,PAAD,SARC,KIRP,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-511,C20orf96	CHOL,THCA,PAAD,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-511,CBFA2T2	CHOL,THCA,PAAD,SARC,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-511,TRMT10B	CHOL,THCA,SARC,KIRP,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-511,WBP1	CHOL,THCA,SARC,KIRP,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-511,PNMA8A	CHOL,THCA,PAAD,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-511,C17orf75	CHOL,THCA,PAAD,SARC,KIRP,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-511,COX11	CHOL,THCA,SARC,KIRP,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-511,C17orf80	CHOL,THCA,SARC,KIRP,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-511,TMED4	CHOL,THCA,PAAD,SARC,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-511,LUC7L2	CHOL,THCA,SARC,KIRP,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-511,ZNF875	CHOL,THCA,SARC,KIRP,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-511,SLC25A23	CHOL,THCA,SARC,KIRP,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-511,P4HTM	CHOL,THCA,PAAD,KIRP,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-511,PGAP2	CHOL,THCA,SARC,KIRP,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-511,C14orf93	CHOL,THCA,PAAD,SARC,KIRP,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-511,GAS8	CHOL,THCA,PAAD,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-511,ZFP41	CHOL,THCA,PAAD,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-511,EIF2D	CHOL,THCA,SARC,KIRP,LIHC
ENSG00000273344	PAXIP1-DT,hsa-mir-22,WDR33	CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,RXRB	CESC,CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,C1orf35	CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,ATAT1	CESC,CHOL,LGG,UCS,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,USP21	CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,FUZ	CESC,CHOL,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,C12orf76	CESC,CHOL,BRCA,UCS,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,NRF1	CESC,CHOL,BRCA,LGG,UCS,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,RING1	CESC,CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,ZC3H4	CHOL,BRCA,LGG,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,FAM117B	CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,EHMT2	CESC,CHOL,BRCA,LGG,UCS,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,ERCC3	CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,PHC1	CESC,CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,RAD52	CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,PRR36	CESC,CHOL,BRCA,LGG,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,HEXIM2	CESC,CHOL,LGG,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,VEZF1	CESC,CHOL,LGG,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,PAXBP1	CESC,CHOL,LGG,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,CNNM3	CESC,CHOL,BRCA,LGG,UCS,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,ING5	CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,CEP131	CESC,CHOL,LGG,UCS,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,CLK2	CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,LUC7L2	CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,TLE2	CESC,CHOL,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,PLA2G6	CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,SBK1	CESC,CHOL,LGG,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,RABL2A	CESC,CHOL,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,NVL	CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,MYEF2	CHOL,BRCA,LGG,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,RBMX	CESC,CHOL,BRCA,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,IQCC	CESC,CHOL,BRCA,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,JADE1	CESC,CHOL,LGG,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,FBXO46	CHOL,BRCA,LGG,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,MSL2	CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,CXXC1	CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,COPS7B	CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,C14orf93	CESC,CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,POLL	CESC,CHOL,LGG,UCS,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,RBM14	CHOL,BRCA,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,UBTF	CHOL,BRCA,LGG,UCS,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,MKS1	CESC,CHOL,LGG,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,PCIF1	CESC,CHOL,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,ABI2	CESC,CHOL,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,DET1	CESC,CHOL,LGG,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,BRD8	CHOL,BRCA,LGG,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,MUTYH	CESC,CHOL,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,ING4	CESC,CHOL,LGG,UCS,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,SRRT	CHOL,BRCA,UCS,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,NSMCE4A	CESC,CHOL,LGG,SARC,KIRP
ENSG00000273344	PAXIP1-DT,hsa-mir-22,ILF3	CHOL,BRCA,LGG,UCS,SARC,KIRP

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000273344.1	ENST00000608317.1	128	211	597

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential