 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | SMCHD1,NDUFAF7,ESCO1,RICTOR,RSRC2,CHORDC1,METTL4,CCNL1,NKTR,ZFC3H1,MYSM1,SOCS4,ZNF91,YAF2,WASHC4,BRWD3,SPICE1,SIAH1,UBE2V1,DMTF1,VCPKMT,CEP192,TAF1D,KATNBL1,HSPBAP1,EIF4A1,CHD2,KMT2A,CRLF3,KHDC4,PIAS2,CEP152,CEP83,MOSMO,RUFY3,VMP1,CENATAC,CLK1,ATXN7,KLHL28,MSANTD2,THOC1,RBM33,NEMF,SLC5A3,PTPN2,UBA6,ATAD2B | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | SPICE1,CCNL1,SENP5,CCDC66,KIAA0907 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | STUB1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000273284 | ENSG00000015153 | YAF2 | BLCA,KICH,LAML,LUAD,PRAD | KICH | | | ENSG00000273284 | ENSG00000018189 | RUFY3 | BLCA,KICH,LUAD,PRAD,STAD | KICH | | | ENSG00000273284 | ENSG00000062716 | VMP1 | BLCA,ESCA,LUAD,PAAD,PRAD,STAD | LUAD | | | ENSG00000273284 | ENSG00000103995 | CEP152 | BLCA,KICH,LAML,STAD,TGCT | KICH | | | ENSG00000273284 | ENSG00000165288 | BRWD3 | BLCA,ESCA,KICH,LAML,LUAD,PRAD | KICH | | | ENSG00000273284 | ENSG00000166012 | TAF1D | BLCA,KICH,LUAD,PAAD,PRAD,STAD | LUAD | | | ENSG00000273284 | ENSG00000198743 | SLC5A3 | BLCA,ESCA,LUAD,PAAD,PRAD | LUAD | | | ENSG00000273284 | ENSG00000132680 | KHDC4 | ESCA,LUAD,PAAD,PRAD,STAD | LUAD | | | ENSG00000273284 | ENSG00000033178 | UBA6 | KICH,LAML,LUAD,PAAD,STAD | KICH | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000273284.1 | ENST00000609701.1 | 100 | 480 | 178 |
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