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lncRNA: ENSG00000273265

Summary for CNNM3-DT

Gene summary

Gene information	Ensembl ID	ENSG00000273265
	Gene symbol	CNNM3-DT
	Gene name	CNNM3 divergent transcript
	HGNC	53592
	Entrez ID	100506036
	Gene type	lincRNA
	Synonyms	RP11-353K11.1\|CNNM3-DT\|02q11.2
	UniProtAcc

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Structure and expression level for CNNM3-DT

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000273265	1.822837e+01	-1.304489e+00	3.614001e-01	-3.609542e+00	3.067380e-04	1.333800e-03	DOWN	GBM
ENSG00000273265	2.799087e+01	-2.625342e+00	2.766737e-01	-9.488948e+00	2.330000e-21	4.320000e-20	DOWN	KICH

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000273265	3.033776e-01	4.277776e-02	CHOL	4.355460e-02
ENSG00000273265	-6.437947e-01	1.008964e-11	KICH	2.140066e-10

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lncRNA-Protein interaction for CNNM3-DT

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for CNNM3-DT

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CNNM3-DT

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000273265	ENST00000608609	exon_skip_482144	chr8:22539468-22539498	-6.49	-0.3416	PPP3CC	ENST00000240139	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000273265	ENST00000608609	exon_skip_41813	chr10:68337857-68337996	-17.10	-0.1295	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000273265	ENST00000608609	exon_skip_111863	chr14:23565815-23565892	-16.06	-0.2433	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000273265	ENST00000608609	exon_skip_111870	chr14:23566561-23566686	-16.22	-0.1448	AP1G2	ENST00000397120	Frame-shift
ENSG00000273265	ENST00000608609	exon_skip_324294	chr2:27774423-27774530	-12.93	-0.1747	MRPL33	ENST00000296102	Frame-shift
ENSG00000273265	ENST00000608609	exon_skip_326885	chr2:74490024-74490127	-13.09	-0.1722	TTC31	ENST00000233623	Frame-shift
ENSG00000273265	ENST00000608609	exon_skip_374375	chr3:49675182-49675309	-15.97	-0.1413	APEH	ENST00000296456	Frame-shift
ENSG00000273265	ENST00000608609	exon_skip_494079	chr8:144099080-144099205	-16.35	-0.1858	SHARPIN	ENST00000398712	Frame-shift
ENSG00000273265	ENST00000608609	exon_skip_333962	chr2:219247112-219247246	-16.22	-0.1257	STK16	ENST00000396738,ENST00000409638	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000273265	hsa-mir-22	ENST00000608609	chr2:96812367-96812462	179.00	-76.09	95	NA
ENSG00000273265	hsa-mir-22	ENST00000608609	chr2:96812478-96812562	154.00	-76.21	86	NA
ENSG00000273265	hsa-mir-22	ENST00000608609	chr2:96812566-96812654	154.00	-67.20	88	NA
ENSG00000273265	hsa-mir-22	ENST00000608609	chr2:96812278-96812373	143.00	-70.57	96	NA

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Variants for CNNM3-DT

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000273265	CNNM3-DT,hsa-mir-22,WDR33	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,C19orf44	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,RXRB	SKCM,KICH,CESC,CHOL,KIRP
ENSG00000273265	CNNM3-DT,hsa-mir-22,DDX42	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,WDR35	SKCM,KICH,CESC,CHOL,KIRP
ENSG00000273265	CNNM3-DT,hsa-mir-22,PHF14	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,ATAT1	SKCM,KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,TADA2A	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,YTHDC1	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,RBM26	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,ERBB3	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,SFPQ	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,C12orf76	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,NRF1	SKCM,KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,PM20D2	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,ZNF7	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,BRD2	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,NAA16	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,FAM117B	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,LSM14A	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,NCOA5	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,SRSF3	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,EHMT2	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,SRSF6	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,PBX2	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,EXOSC2	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,PAN3	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,DNMT3A	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,ZMYM2	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,C17orf75	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,C1orf131	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,VEZF1	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,EIF2D	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,PRPF4B	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,PAXBP1	SKCM,KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,RBM39	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,SMARCE1	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,LUC7L3	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,ING5	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,CLK2	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,IRF2BP2	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,SNRNP48	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,PCID2	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,PRPF38A	SKCM,KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,KHDC4	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,GPATCH2	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,CEP95	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,MBTD1	SKCM,KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,TIA1	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,RBBP6	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,TRIM13	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,GTF3C4	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,POLG2	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,RBMX	SKCM,KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,NEK8	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,ARGLU1	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,FBXO46	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,RBM5	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,RCOR3	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,SRSF7	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,REV1	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,C14orf93	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,CHTOP	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,MDM4	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,MKS1	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,PCIF1	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,POGZ	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,UBXN11	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,KANSL1L	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,THOC2	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,CRYZL1	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,CTDSPL2	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,PRR3	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,IFT172	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,ELF2	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,KDM5B	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,MUTYH	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,ING4	SKCM,KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,IP6K2	SKCM,KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,SOX4	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,C11orf49	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,H3-3A	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,TRAF4	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,PRPF39	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,SREK1	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,EZH1	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,MCM3	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,ZBTB5	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,SMAD4	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,ZNF16	SKCM,CESC,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,MAP3K1	SKCM,KICH,CHOL,KIRP,LIHC
ENSG00000273265	CNNM3-DT,hsa-mir-22,PUM1	SKCM,KICH,CHOL,KIRP,LIHC

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000273265.1	ENST00000608609.1	63	250	59

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential