 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SMAD1,ADAT1,HIF1A,TEP1,DDX3X,GTF2I,BAZ2A,AGFG1,SF3A1,HBP1,PPARA,FOXN3 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000273156 | ENST00000610058 | exon_skip_150854 | chr17:32366664-32366757 | -7.85 | -0.1353 | ZNF207 | ENST00000321233 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000273156 | ENST00000610058 | exon_skip_361485 | chr21:29008239-29008307 | -9.56 | -0.1620 | RWDD2B | ENST00000493196 | Frame-shift | | ENSG00000273156 | ENST00000610058 | exon_skip_111863 | chr14:23565815-23565892 | -11.77 | -0.1549 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000273156 | ENST00000610058 | exon_skip_114365 | chr14:74290026-74290118 | -9.07 | -0.1851 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000273156 | ENST00000610058 | exon_skip_132355 | chr16:1786756-1786955 | -12.72 | -0.1078 | NUBP2 | ENST00000262302 | Frame-shift | | ENSG00000273156 | ENST00000610058 | exon_skip_370518 | chr22:50247691-50247776 | -8.71 | -0.1708 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000273156 | ENST00000610058 | exon_skip_382458 | chr3:38131595-38131638 | -5.75 | -0.2300 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000273156 | ENST00000610058 | exon_skip_62623 | chr11:69079833-69079883 | -5.92 | -0.8457 | TPCN2 | ENST00000294309 | Frame-shift | | ENSG00000273156 | ENST00000610058 | exon_skip_66482 | chr11:126274926-126275021 | -7.68 | -0.1067 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000273156 | ENST00000610058 | exon_skip_74009 | chr11:64773429-64773505 | -6.70 | -0.1196 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000273156 | ENST00000610058 | exon_skip_153767 | chr17:48057031-48057121 | -8.53 | -0.1551 | NFE2L1 | ENST00000362042 | In-frame | | ENSG00000273156 | ENST00000610058 | exon_skip_287763 | chr17:28884224-28884315 | -6.81 | -0.1154 | FLOT2 | ENST00000394908 | Frame-shift | | ENSG00000273156 | ENST00000610058 | exon_skip_339830 | chr2:69423581-69423717 | -10.77 | -0.1330 | NFU1 | ENST00000410022 | Frame-shift | | ENSG00000273156 | ENST00000610058 | exon_skip_380242 | chr3:186784961-186785101 | -8.08 | -0.1525 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000273156 | ENST00000610058 | exon_skip_462144 | chr6:125298713-125298816 | -8.31 | -0.1079 | HDDC2 | ENST00000398153 | Frame-shift | | ENSG00000273156 | ENST00000610058 | exon_skip_462972 | chr6:152130719-152130778 | -8.24 | -0.1717 | SYNE1 | ENST00000367255 | Frame-shift | | ENSG00000273156 | ENST00000610058 | exon_skip_52671 | chr10:97461495-97461622 | -9.82 | -0.1383 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000273156.1 | ENST00000610058.1 | 89 | 115 | 384 |
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