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lncRNA: ENSG00000273151

Summary for RP11-449P15.2

Gene summary

Gene information	Ensembl ID	ENSG00000273151
	Gene symbol	RP11-449P15.2
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-449P15.2

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000273151	4.902676e+02	1.217382e+00	2.437672e-01	4.994037e+00	5.910000e-07	2.670000e-06	UP	KIRP
ENSG00000273151	3.013437e+02	1.517047e+00	1.662244e-01	9.126498e+00	7.080000e-20	7.100000e-19	UP	LUAD
ENSG00000273151	4.546257e+02	1.569973e+00	1.928621e-01	8.140390e+00	3.940000e-16	1.420000e-14	UP	STAD
ENSG00000273151	3.076115e+02	1.424004e+00	2.872352e-01	4.957623e+00	7.140000e-07	9.380000e-06	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

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lncRNA-Protein interaction for RP11-449P15.2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000273151	ENST00000609998	RP11-449P15.2	ENSG00000181555	SETD2	167.85	93.7183	Q9BYW2	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000273151	ENST00000609998	RP11-449P15.2	ENSG00000130254	SAFB2	148.04	96.1326	Q14151	TF,RBP	ENCODE

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000273151	ENST00000609998	RP11-449P15.2	ENSG00000137776	SLTM	166.31	94.2269	Q9NWH9	RBP	ENCODE
ENSG00000273151	ENST00000609998	RP11-449P15.2	ENSG00000130254	SAFB2	148.04	97.0453	Q14151	TF,RBP	ENCODE

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lncRNA-DNA interaction for RP11-449P15.2

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

MFSD8,TMEM234,BRD1,SPATA13,MZF1,TTC31,MAPK8IP3,SUGP2,N4BP2L2,DMTF1,SLF2,ZDHHC23,UNKL,PIGG,LMBR1L,USP36,KMT2B,CENATAC,NPEPL1,WDR5B,SAFB2,MSANTD2,TUBGCP6,CCDC14,SMARCC2,CLK4,SETD2,TTC14,KNTC1,TAZ,SPG7,CDC42BPG,PPIP5K1,ECHDC2,OGT,NOD1,COX19,SKAP2,CLK2,FAM219B,ASH1L,POLG2,DHX34,RBM15,FAN1,MGRN1,BBIP1,SLC12A9,THOC2,ATXN7,LLGL2,VPS36,ATP9A,SLC25A29,FCHSD1,IFT172,NCOA6,ANO8,RSRC2,HERPUD2,ANKRD11,EML4,SETD5,ZFP62,GON4L,MDN1,BRAF,OSBPL3,CUL9,PASK,ABHD16A,ATG4B,SUPT20H,LMNTD2,CCDC191,NXF1,DCUN1D2,TSSK6,DAGLB,NR2C2,PAN2,GIGYF1,SMURF1,FAM193B,PLS1,XPO1,ZFC3H1,MIOS,MBTD1,ATXN2L,ARHGEF7,GAS8,DDX42,WDR35,ARHGEF11,EIF4A1,VPS13A,POLM,ZNF69,MARCHF6,HERC4,CASTOR3,MBOAT1,ILF3,GLI4,TTC17,CDK13,LENG8,PHKA2,DDX56,NICN1,DNMBP,SPICE1,SH3D21,RELCH,MLLT6,INO80D,NHLRC3,TMED4,ARFGAP1,CAPN10,KRIT1,AP1G2,FAM111A,BANP,THOC1,ANKMY1,WDR59,PHF12,ARHGAP27,ODR4,UGGT2,ZMYM5,RC3H1,ZNF44,ARHGEF38,SMG1,DENND11,LTO1,TRAF1,PIDD1,METAP1D,BEND7,BCLAF3,PUS7L,SLC26A1,NUDCD3,ALS2CL,ZCCHC14,GGNBP2,ATP11A,EP400,DOCK6,UBN2,EXD3,LRIG2,CABLES2,NRBP2,PRR12,MECP2,AFDN,IKBKB,RPRD1B,ACIN1,ZC3H8,TNRC18,ENOSF1,MAU2,TAOK2,PAXBP1,COA1,FNBP4,LRRC56,INPP5E,KMT2D,PLEKHA8,RSRP1,CHD2,USP40,GOLGB1,ZSWIM1,NBPF15,KIFC2,ANKLE2,HEMK1,GSAP,STAT6,FBXL8,ZSWIM8,LSG1,NOL4L,RBM6,ZNF862,TP53BP1,ZFHX3,ARHGAP12,CCDC142,PAXIP1,NOM1,TYW1,SYNGAP1,ANKMY2,WDR27,HECTD4,EME2,KHDC4,PLXNB1,TPR,PPP1R26,HPS4,PNISR,TMEM63A,UBE3B,DMXL2,NISCH,NCOA2,ATAT1,TNPO3,ANGEL2,BICRA,WDR11,IQCE,MYSM1,MED13L,AKAP8,NUP214,FBXO41,VPS13B,TAF4,PLEKHH1,SPIN3,RDH13,KLHDC4,GATAD1,CCNL2,TET3,PDPK1,CLK3,RNPC3,ANKRD10,CNOT4,SON,KANSL3,KMT2C,INTS1,CCNT2,POM121C,OSBPL7,EDC4,NFRKB,ZNF91,CHD6,AGO2,BRWD1,PLA2G6,NAPEPLD,PURB,RBM25,RHPN1,MLH3,SP4,SETD6,KANSL1L,UBR5,PRPF39,ERMARD,KIAA0753,SRRM2,VPS41,HEATR5B,BTN2A1,LCOR,PABIR2,CMTR2,HSF4,RBM41,PROSER3,ARGLU1,ANKS3,CCNL1,RGL3,PIWIL4,VMAC,SOGA1,CELF1,MADD,MICALL2,FAM149B1,FAM160A2,ZGPAT,ADCY6,PBX4,TIA1,DNAAF5,HOOK2,ZNF83,HCN3,KANSL1,NSUN6,ZNF8,DNMT3A,ABCD4,BRAT1,VSIG10,RUSF1,NEIL1,SZT2,POLE,GRIPAP1,CRAMP1,LUC7L,URGCP,PNN,LUC7L2,CCAR1,UBE2V1,MROH1,SNX13,PMS2,TRA2A,MAPKAPK5,REV1,NR2C1,CYTH2,RUFY2,TEPSIN,RBM33,AVL9,NOL8,LRCH4,SRRT,AGAP6,GGA3,GABPB2,ATXN7L1,TRIM66,RBM39,PLEKHA7,NRF1,ZXDC,ICA1,INTS3,PIGL,NEK3,CSAD,KIAA0895L,BAZ2A,GPATCH2,RBM28,DCAF8,PHYKPL,SF3B1,POFUT2,OGA,NUP42,RECQL5,PAN3,KMT2E,PEX1,CALCOCO1,MTG1,FBXW8,POGZ,GTPBP3,RNF216,TSC2,PCNT,TAF1C,ADNP,ADAT2,IKZF4,CNKSR1,EZH1,MRNIP,THAP6,SS18L1,ELMOD3,DDX17,RSBN1L,MTRF1,MACC1,RAD52,CEP290,EIF2AK1,PGGHG,SLC24A1,WSB1,ERV3-1,DUSP16,ANO9,ABCC5,TIGD1,KLC1,TRIM52,ZC3HAV1L,CCDC93,TTC13,MBD6,STK36,TAX1BP1,ZMAT1,GOLGA8B,ACP6,VPS13C,DIDO1,GOLGA8A,CYP2R1,SETD4,SPIRE2,AARSD1,RBM5,NKTR,FARP2,C19orf71,SRCAP,TTLL3,ZNF84,BAZ2B,PARP6,BICRAL,LRP5L,KATNIP,ASXL1,TSC1,FBRS,SPG11,MAN2C1,WHAMM,CCDC57,KBTBD2,STK38

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-449P15.2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000273151	ENST00000609998	exon_skip_382458	chr3:38131595-38131638	-12.87	-0.4290	ACAA1	ENST00000333167	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-449P15.2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000273151	ENSG00000068650	ATP11A	ACC,CHOL,COAD,ESCA,LAML,PAAD,READ	READ
ENSG00000273151	ENSG00000122678	POLM	ACC,COAD,ESCA,KIRP,LAML,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000130299	GTPBP3	ACC,CHOL,KIRP,PAAD,READ	READ
ENSG00000273151	ENSG00000130699	TAF4	ACC,CHOL,COAD,ESCA,KIRP,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000143630	HCN3	ACC,COAD,KIRP,OV,READ,STAD	READ
ENSG00000273151	ENSG00000145217	SLC26A1	ACC,COAD,ESCA,LAML,OV,READ	READ
ENSG00000273151	ENSG00000146828	SLC12A9	ACC,CHOL,ESCA,KIRP,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000146830	GIGYF1	ACC,CHOL,COAD,KIRP,LAML,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000147162	OGT	ACC,CHOL,COAD,ESCA,KIRP,LAML,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000148384	INPP5E	ACC,KIRP,LAML,OV,READ	READ
ENSG00000273151	ENSG00000149679	CABLES2	ACC,CHOL,COAD,KIRP,READ	READ
ENSG00000273151	ENSG00000163013	FBXO41	ACC,COAD,ESCA,OV,READ,STAD	READ,STAD
ENSG00000273151	ENSG00000164818	DNAAF5	ACC,CHOL,KIRP,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000164877	MICALL2	ACC,CHOL,COAD,ESCA,KIRP,LAML,OV,PAAD,READ,STAD	KIRP
ENSG00000273151	ENSG00000167615	LENG8	ACC,CHOL,COAD,ESCA,KIRP,LAML,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000171456	ASXL1	ACC,CHOL,COAD,ESCA,KIRP,LAML,OV,READ,STAD	READ
ENSG00000273151	ENSG00000175455	CCDC14	ACC,CHOL,COAD,KIRP,OV,PAAD,READ,STAD	KIRP,STAD
ENSG00000273151	ENSG00000184402	SS18L1	ACC,COAD,ESCA,LAML,OV,PAAD,READ	READ
ENSG00000273151	ENSG00000186088	GSAP	ACC,COAD,KIRP,OV,PAAD,READ	KIRP
ENSG00000273151	ENSG00000197948	FCHSD1	ACC,COAD,KIRP,OV,READ,STAD	KIRP
ENSG00000273151	ENSG00000214021	TTLL3	ACC,COAD,ESCA,KIRP,LAML,OV,PAAD,READ,STAD	KIRP,READ
ENSG00000273151	ENSG00000215440	NPEPL1	ACC,COAD,KIRP,PAAD,READ	READ
ENSG00000273151	ENSG00000070882	OSBPL3	CHOL,COAD,ESCA,KIRP,PAAD,READ,STAD	READ,STAD
ENSG00000273151	ENSG00000103037	SETD6	CHOL,COAD,KIRP,OV,PAAD,READ	READ
ENSG00000273151	ENSG00000103168	TAF1C	CHOL,COAD,KIRP,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000130158	DOCK6	CHOL,COAD,ESCA,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000132680	KHDC4	CHOL,COAD,ESCA,KIRP,LAML,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000135722	FBXL8	CHOL,COAD,KIRP,OV,PAAD,READ,STAD	KIRP,READ
ENSG00000273151	ENSG00000138834	MAPK8IP3	CHOL,COAD,KIRP,LAML,OV,PAAD,READ,STAD	KIRP,READ
ENSG00000273151	ENSG00000159314	ARHGAP27	CHOL,ESCA,KIRP,OV,PAAD	KIRP
ENSG00000273151	ENSG00000161960	EIF4A1	CHOL,COAD,KIRP,OV,PAAD,READ	KIRP
ENSG00000273151	ENSG00000163482	STK36	CHOL,COAD,ESCA,KIRP,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000164050	PLXNB1	CHOL,COAD,ESCA,KIRP,LAML,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000167702	KIFC2	CHOL,KIRP,OV,PAAD,READ,STAD	KIRP,READ
ENSG00000273151	ENSG00000168612	ZSWIM1	CHOL,ESCA,KIRP,OV,READ,STAD	READ
ENSG00000273151	ENSG00000178093	TSSK6	CHOL,LAML,OV,READ,STAD	READ
ENSG00000273151	ENSG00000183397	C19orf71	CHOL,LAML,OV,PAAD,READ	READ
ENSG00000273151	ENSG00000183742	MACC1	CHOL,COAD,ESCA,KIRP,PAAD,STAD	KIRP,STAD
ENSG00000273151	ENSG00000184445	KNTC1	CHOL,COAD,KIRP,PAAD,STAD	KIRP,STAD
ENSG00000273151	ENSG00000196123	KIAA0895L	CHOL,COAD,KIRP,OV,READ,STAD	KIRP,READ
ENSG00000273151	ENSG00000197774	EME2	CHOL,COAD,KIRP,OV,PAAD,READ	KIRP,READ
ENSG00000273151	ENSG00000204149	AGAP6	CHOL,COAD,ESCA,KIRP,LAML,OV,PAAD,READ,STAD	KIRP,READ
ENSG00000273151	ENSG00000240230	COX19	CHOL,COAD,ESCA,KIRP,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000003147	ICA1	COAD,ESCA,KIRP,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000115687	PASK	COAD,ESCA,KIRP,OV,READ	READ
ENSG00000273151	ENSG00000134627	PIWIL4	COAD,ESCA,PAAD,READ,STAD	STAD
ENSG00000273151	ENSG00000137343	ATAT1	COAD,KIRP,LAML,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000142330	CAPN10	COAD,ESCA,KIRP,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000162836	ACP6	COAD,ESCA,KIRP,OV,PAAD,READ	READ
ENSG00000273151	ENSG00000164535	DAGLB	COAD,ESCA,KIRP,OV,READ,STAD	KIRP
ENSG00000273151	ENSG00000168096	ANKS3	COAD,KIRP,LAML,OV,READ,STAD	KIRP,READ
ENSG00000273151	ENSG00000175265	GOLGA8A	COAD,ESCA,KIRP,LAML,OV,READ,STAD	KIRP,STAD
ENSG00000273151	ENSG00000184465	WDR27	COAD,KIRP,LAML,OV,PAAD,READ,STAD	KIRP,READ
ENSG00000273151	ENSG00000185101	ANO9	COAD,ESCA,KIRP,OV,PAAD,READ,STAD	KIRP,READ
ENSG00000273151	ENSG00000185189	NRBP2	COAD,KIRP,OV,PAAD,READ	KIRP
ENSG00000273151	ENSG00000186166	CENATAC	COAD,ESCA,KIRP,OV,PAAD,READ	KIRP,READ
ENSG00000273151	ENSG00000189007	ADAT2	COAD,ESCA,PAAD,READ,STAD	READ,STAD
ENSG00000273151	ENSG00000196187	TMEM63A	COAD,ESCA,KIRP,LAML,OV,PAAD,READ,STAD	READ,STAD
ENSG00000273151	ENSG00000215252	GOLGA8B	COAD,ESCA,KIRP,OV,READ	KIRP,READ
ENSG00000273151	ENSG00000221978	CCNL2	COAD,ESCA,KIRP,LAML,OV,PAAD,READ,STAD	KIRP,READ
ENSG00000273151	ENSG00000256525	POLG2	COAD,KIRP,LAML,PAAD,READ,STAD	KIRP,READ
ENSG00000273151	ENSG00000006025	OSBPL7	ESCA,KIRP,LAML,OV,PAAD	KIRP
ENSG00000273151	ENSG00000100068	LRP5L	ESCA,KIRP,LAML,READ,STAD	READ
ENSG00000273151	ENSG00000142102	PGGHG	ESCA,KIRP,OV,PAAD,STAD	KIRP,STAD
ENSG00000273151	ENSG00000142675	CNKSR1	ESCA,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000158106	RHPN1	ESCA,KIRP,OV,PAAD,STAD	KIRP,STAD
ENSG00000273151	ENSG00000197119	SLC25A29	ESCA,KIRP,LAML,OV,PAAD,READ	READ
ENSG00000273151	ENSG00000102125	TAZ	KIRP,OV,PAAD,READ,STAD	KIRP,READ
ENSG00000273151	ENSG00000106009	BRAT1	KIRP,OV,PAAD,READ,STAD	READ
ENSG00000273151	ENSG00000177595	PIDD1	KIRP,OV,PAAD,READ,STAD	KIRP,READ

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000273151.1	ENST00000609998.1	130	325	717

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential