 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | UBR5,SON,QKI,REST,HBP1,ZBED6,ZEB2,BBX,CPEB4,NAF1,ASH1L,ELF1,FOXN3,G3BP1,IREB2,XRN1,DDX6,LIN54,ATF1,NCOA2,DDX3X,NR2C2,RBM7 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000273145 | ENST00000608290 | exon_skip_484062 | chr8:73030335-73030395 | -9.02 | -0.1961 | TERF1 | ENST00000276603 | In-frame | | ENSG00000273145 | ENST00000608290 | exon_skip_343108 | chr2:127051153-127051243 | -18.78 | -0.2608 | BIN1 | ENST00000316724 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000273145 | hsa-mir-378a | ENST00000608290 | chr22:46013626-46013693 | 183.00 | -72.96 | 61 | NA | | ENSG00000273145 | hsa-mir-378a | ENST00000608290 | chr22:46014532-46014596 | 180.00 | -66.48 | 65 | NA | | ENSG00000273145 | hsa-mir-378a | ENST00000608290 | chr22:46014474-46014538 | 171.00 | -64.37 | 68 | NA | | ENSG00000273145 | hsa-mir-378a | ENST00000608290 | chr22:46014255-46014318 | 166.00 | -60.35 | 66 | NA | | ENSG00000273145 | hsa-mir-378a | ENST00000608290 | chr22:46014342-46014404 | 156.00 | -66.08 | 59 | NA | | ENSG00000273145 | hsa-mir-378a | ENST00000608290 | chr22:46014164-46014239 | 152.00 | -67.05 | 74 | NA | | ENSG00000273145 | hsa-mir-378a | ENST00000608290 | chr22:46014085-46014159 | 143.00 | -75.18 | 73 | NA | | ENSG00000273145 | hsa-mir-378a | ENST00000608290 | chr22:46013985-46014054 | 140.00 | -65.27 | 64 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000273145 | CITF22-92A6.1,hsa-mir-378a,C18orf32 | KICH,CHOL,UVM,GBM,PAAD | | ENSG00000273145 | CITF22-92A6.1,hsa-mir-378a,ABCA2 | TGCT,CHOL,UVM,GBM,PAAD | | ENSG00000273145 | CITF22-92A6.1,hsa-mir-378a,TLCD5 | KICH,TGCT,CHOL,UVM,GBM |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000273145.1 | ENST00000608290.1 | 236 | 70 | 780 |
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