 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ARHGEF17,ARHGEF1,GSDMB,B3GNTL1,VAMP1,ARL16,EPOR,TCEA2,ZSWIM9,TUBGCP2,BICD2,TBC1D24,ADCY4,MFSD8,GBF1,ABHD17A,TMEM234,NBPF9,BRD1,MAST3,CIRBP,PET100,RNF166,MZF1,MCEE,SHARPIN,DHX38,SIRT3,COL4A5,MAPK8IP3,LYSMD4,SUGP2,VAMP4,FKRP,N4BP2L2,BCS1L,DMTF1,MKNK1,SLF2,L3HYPDH,PPM1F,CTU1,FAM193A,UNKL,DPP7,PHF10,PIGG,LMBR1L,GPCPD1,TRAPPC12,PTPRS,NUP50,CELSR1,TOB2,ZBED4,ULK3,VPS39,KMT2B,IRAK4,STAT2,ZFP14,TNFRSF13C,CENATAC,NPEPL1,EFS,WDR5B,TP53INP1,TMC8,SAFB2,KCTD13,MSANTD2,TUBGCP6,CCDC14,CHKA,OSER1,INF2,ACAD8,PLPPR2,EVPL,PIAS3,CLK4,C6orf136,MAEA,DENND1C,USP30,FAM133B,ZBED5,EIF2B5,ATXN7L3,INPP5B,SETD2,RABGGTB,ARHGAP40,RECQL4,BRPF1,TTC14,KNTC1,SLC2A11,HMGXB3,GATD1,SPRN,TTC21A,SUGP1,TAZ,SPG7,NAA80,C19orf44,SRSF4,CDC42BPG,ARHGAP19,USP49,SCYL3,PPIP5K1,CLCN6,ECHDC2,OGT,RCCD1,ASIC3,NOD1,SCML1,BAIAP2L2,IGIP,RAB4B,RFX2,COX19,PDE7A,CLK2,MYEF2,BRSK1,FAM219B,TARBP2,ILKAP,ARID4B,ASH1L,CNST,POLG2,DHX34,TUT4,RING1,RBM15,CHKB,CEP152,IFT81,METTL17,FAN1,RIC8B,CPSF7,JAK3,BBIP1,RAPGEF3,TRIM11,MAP4K1,NPHP4,CBY1,WDR83,MORC2,OSGEP,SLC12A9,THOC2,USF1,ACAD10,CTC1,CLK1,ATXN7,MRRF,ITGB3BP,GABPB1,WDR5,NASP,TMEM79,LLGL2,PDZD4,DHPS,RABL2A,MOV10,RPAIN,CTTN,OFD1,CARS2,ACYP1,CCDC9B,ENO3,SLC25A29,FCHSD1,PIH1D1,IQGAP3,IFT172,HELLS,CC2D1B,CRELD2,CFAP298,XPNPEP3,MIS12,ANO8,RSRC2,TTC21B,HSH2D,NAPB,TRMU,ANKRD11,ARID1A,C3orf62,NAA25,CYSRT1,ZADH2,APBA3,NEMP1,CBX7,USP35,SYVN1,MAP3K14,EML4,SETD5,ZFP62,GON4L,MDN1,ALKBH2,C9orf72,ZBED8,ANAPC5,ORMDL1,DHODH,YTHDC1,LPAR2,C22orf39,COQ6,C12orf73,DDX51,DONSON,AGER,MBD4,FUZ,AGO3,ADGRL1,ORC2,PIGZ,NFKBIZ,SPOUT1,SRSF2,C1orf52,CUL9,CDK11A,TECPR1,SYMPK,FBXW4,PASK,TSEN54,ZZEF1,LRRC37B,DHX35,ABHD16A,ATG4B,UBE2O,SUPT20H,LMNTD2,CCDC191,ADHFE1,NXF1,DCUN1D2,SRCIN1,TSSK6,EIF2B1,TNKS,UQCC1,CBX6,NR2C2,PLIN5,PAN2,SIX5,BMF,FAM229A,SLFN13,CCS,PPP1R9B,SLC25A16,CCDC159,MOAP1,DUS3L,GIGYF1,PARP10,HMGN3,GTSE1,KHNYN,ZNF14,FAM193B,BRD2,THEM4,PNKP,ABCA7,NOL3,SLC25A28,TMCO6,STK25,CCAR2,COG7,SEC31B,NRDE2,CZIB,PIK3C2B,ATG2B,ZFC3H1,MTMR4,KLHL17,NFYB,MBTD1,ARHGAP33,DMAC2L,HDAC5,N4BP2L1,DNASE1,SEPSECS,HEXD,IFT122,ARHGEF7,TNPO2,GAS8,DVL2,DDX42,VCPKMT,TTC3,CEP192,SCNN1D,ARHGEF11,EIF4A1,CCDC24,STAG3,RINT1,MRPS25,DHX16,LYSMD1,AHDC1,CCDC12,VPS13A,POLM,DECR2,GOLGA2,ZNF69,TDRP,SHROOM1,TRIM27,KIF12,CCDC154,BRD4,ZFP3,ERCC5,EIF4ENIF1,PEX11B,LTN1,ABHD8,IQCC,CASTOR3,ZNF30,AMMECR1L,GTPBP1,PYROXD2,ATM,ARHGEF2,SLC26A11,TEDC2,FANCL,ILF3,PLEKHG5,GLI4,NOL8,TTC17,CAPN12,MRPL55,CDK13,DPY19L3,SMG7,LENG8,PER2,RBBP8NL,SH2B1,RANBP3,STK11,PHKA2,PPP1R12C,C1orf159,DGKA,PRR3,FAM98C,NICN1,CEP57,UBE2G2,INPPL1,IP6K2,PPOX,ARIH2,CABIN1,SH3D21,PIF1,PLEKHG2,PPWD1,RELCH,ARMCX4,MLLT6,AHI1,ZNF70,INO80D,ICE2,NHLRC3,AGK,TRIM65,EIF2B4,BIVM,ATP8B2,TIMM44,KDM5C,C20orf96,PGAP1,ADGRA3,PHF7,DDX55,HSCB,RASAL3,COG8,SMG5,ARFGAP1,CASP2,CAPN10,BICDL2,AP1G2,GLMN,FAM111A,BANP,MICA,THOC1,CCDC40,ANKMY1,WDR59,C8orf58,INPP5E,TMEM175,AKNA,GNPTG,MTA2,NUMA1,FANCA,PHF12,EPN2,GPN2,ACBD6,TNK2,INTS11,ARHGAP27,EZH2,ODR4,UGGT2,ZMYM5,REXO1,GAK,C2CD3,IFT140,IZUMO4,TAMM41,NBEAL2,CSNK1D,SLC4A3,RASGRP2,GDPD3,DRC3,SNRNP48,RC3H1,CACNB1,CBLB,SLC25A42,PCID2,SETX,ZNF44,CDK20,TMEM138,TRIM13,SMG1,ALKBH6,NPDC1,PKD1,RIMKLB,TAF8,LTO1,TRAF1,PIDD1,PHC1,RAI1,METAP1D,NME4,BCLAF3,SEMA4D,DZIP1L,NOXA1,CCDC106,NFYC,SLC26A1,IFT80,BBS2,ALS2CL,CEP83,NEK9,GGNBP2,HMGB1,FBXO44,EP400,NCOR2,CDK5RAP2,DOCK6,SPECC1L,UBN2,ANKDD1A,METTL23,EXD3,PPP2R5B,NFKBID,C17orf75,GSDMD,LRIG2,PPP1R13B,P4HTM,PARP2,CDH24,PCED1A,ABTB1,NRBP2,SMCHD1,MAPK15,SLX4,EHMT2,MECP2,AFDN,ANGEL1,SMYD4,IKBKB,NBPF11,LMF1,DYNLT2,BRF1,ACIN1,ZC3H8,ARHGAP17,TNRC18,GRIPAP1,SART3,RAB17,ENOSF1,MAU2,DZIP3,RAB2B,ANKRD49,CYB561D1,PAXBP1,LEMD2,PGBD1,GANC,MEX3A,AVIL,ZNF48,COA1,FNTA,MOGS,GALT,TADA2A,FNBP4,MMS19,CEP85,DENND6B,ATF4,CCHCR1,ZFYVE19,LRRC56,PRMT7,KMT2D,SYNRG,BOD1L1,PHF11,RSRP1,IL11RA,TLE2,SSH2,NEK8,TBCD,MLLT10,CHD2,FLCN,USP40,MED23,NVL,CRACR2B,CLEC2D,ATG14,GOLGB1,ZSWIM1,VPS28,NBPF15,TRPT1,TATDN2,LTB4R,KIFC2,EXOC3L4,TSNARE1,ANKLE2,ODF3B,NIT1,HEMK1,UPF3B,LINS1,HERC1,ROGDI,RABEP2,IFT20,SBNO2,OGFR,PCSK4,GSAP,RAB11FIP3,CLHC1,STAT6,GGA2,DDX11,NDUFAF5,FRS3,RRNAD1,C2orf68,FBXL8,MRE11,GNRH1,SCARF1,ZSWIM8,AP4M1,ARHGAP32,PLXNB3,GK5,NOL4L,RBM6,TRMT13,PARVG,KRTCAP2,ZNF862,SLC23A2,LRWD1,TTBK2,PISD,SBF1,IDUA,ARHGEF19,TMEM134,CCDC82,POP5,RNF115,ELP1,GDI1,MYL5,PAXIP1,KIF18B,NLRP1,SYNE2,NOM1,BTN2A2,GGT7,TNFRSF14,EPM2AIP1,UCKL1,SYNGAP1,XAF1,CHD1,PSME3IP1,TLE3,TCF25,GPSM1,MAML1,WDR27,UBXN11,HECTD4,EME2,PTCD1,YY1AP1,PPCDC,HARS2,KHDC4,DCAF15,CROCC,PLXNB1,CERS5,RSAD1,TPR,EP400P1,MIDEAS,PPP1R26,GATAD1,HPS4,MPP3,PNISR,GEN1,SFPQ,TPCN1,TMEM63A,ARHGEF25,FHOD1,AMT,ACAP3,LRRC27,TRIOBP,USP45,AMH,DNAJC9,CARD8,PANK4,ELL,DMXL2,MVD,ENKD1,ASCC2,ZDHHC1,ATAD2B,ZNF10,SRSF7,LRRC14,KCNC3,NISCH,FBXO9,ATAT1,IFFO1,DUT,BCL6,PI4KA,PLCG1,RALGAPA1,RASSF1,ZDHHC11B,PBX2,MYO9B,MYPOP,MEGF6,CTBP1,ANGEL2,BICRA,POMT1,ATXN7L2,PARP15,ZNF598,STARD3,POC5,KDM3B,MYSM1,FAM214A,ADPGK,CHTF18,AKAP8,NLGN2,CDPF1,CEP250,ARID2,FBXO41,UBTF,MSTO1,UIMC1,DPY19L2,UBE2J2,TJAP1,ACADVL,RNF44,TAF1D,KATNBL1,MKS1,TAF4,C1orf35,PLEKHH1,CEP95,CCDC174,ACAP1,CDK5RAP1,PIP4P1,SPIN3,C7orf26,FOXRED1,MARCHF9,BUD23,TBRG1,PIGC,TBP,SLX4IP,ZCWPW1,NPRL2,EML3,RDH13,KLHDC4,KLHDC1,CCNL2,TET3,DCAKD,FBXO46,DMPK,EXOC3,CLK3,RNPC3,C14orf28,TOM1L2,SLC6A16,ANKRD10,TENT4A,INCA1,VPS9D1,RGS11,SLC25A35,LRCH3,MNT,GABBR1,SON,CHTOP,TFAP4,N6AMT1,BTBD19,DOP1A,ZDHHC8,MSL3,KANSL3,KMT2C,MED25,DDTL,SGSM3,ALG12,EHBP1L1,TP53I13,SCAF4,PHF8,MC1R,TYK2,C1orf174,VILL,COQ4,KYAT1,CCNT2,OSBPL7,SCRIB,PI4KB,WDR62,EDC4,SEPTIN1,KAT2A,PHLDB3,NFRKB,ZNF91,CHD6,JMJD7-PLA2G4B,ACBD4,AGO2,BRWD1,SLC17A9,U2AF2,DDI2,CHD3,ANKS6,PPFIA4,RBM26,PLA2G6,CSNK1E,NAPEPLD,TMEM86B,RNPS1,PCSK7,CAMK2G,ZBTB3,TUBGCP5,RBM25,ENTR1,SLC27A3,CYBC1,FBXW7,ARAP1,JOSD1,DGCR2,RHPN1,ENDOV,POLR3H,MLH3,CLSTN3,CLDN15,SETD6,FAM50A,STX1A,KANSL1L,POLI,PAQR6,SEMA6C,PRPF39,ARMH1,ZNF34,ERMARD,KIAA0753,FAM53B,TRIM45,ENTPD4,NDOR1,SGSH,PRR36,SRRM2,HEATR5B,BTN2A1,WHRN,SUOX,EPC1,TENM1,PARP3,PHF1,DDHD1,MTHFR,PABIR2,HIRA,MAP4K5,GORAB,HDAC10,FBXL20,HEXIM2,CHADL,CEP44,CENPC,SCRN2,RNF208,HSF4,RBM41,PROSER3,NOL9,HERC2,ARGLU1,ANKS3,YJEFN3,NEPRO,LIG4,CBX4,UCK1,TUBGCP4,TCAP,LY6G5B,RUBCN,CCNL1,RGL3,ANKRD54,C10orf88,USP19,ANKRA2,SGSM2,RASSF7,POMT2,WIZ,VMAC,SOGA1,KRI1,RNF25,CELF1,SCMH1,TMEM161B,ZSWIM4,MICALL2,MADD,RBM45,HSPBAP1,CRYGS,PRDM2,YAE1,ACTR1B,FAM149B1,R3HDM2,LBHD1,QRICH1,OGG1,FAM160A2,EGFL8,KIF7,NR2C2AP,PSMG4,DDX31,ZGPAT,ADCY6,PPM1M,HDHD5,PBX4,TIA1,ALDH16A1,HOOK2,ZNF83,PPP4R3A,HCN3,TMUB2,KANSL1,NSUN6,ARFRP1,ZNF3,TBC1D20,MCRIP2,ZNF8,ZMYM3,DNMT3A,ABCD4,TBC1D8,TRIM46,DPH1,BRAT1,ERCC3,DGKQ,C15orf62,POLG,RUSF1,C19orf25,NEIL1,KDM2B,SZT2,POLE,MYO18A,ADAMTS13,VPS33B,DDX5,DTX3,KPTN,MTG2,RNF215,THOP1,PLCB2,TLE5,MAPK11,HELZ,NAT9,UBA7,LRRK1,CPNE1,ELF2,ABHD14A,CRAMP1,PROCA1,LUC7L,KLHL22,MRTFA,ZNF43,WDR6,URGCP,PNN,CWF19L1,TRMT61A,MICAL3,COA5,ACY1,DSN1,LUC7L2,BRD8,MAP2K7,SEMA4G,PPAN,CHAF1A,DGKD,CENPJ,BBS4,C14orf93,MROH1,LRSAM1,DPH7,XRCC1,TNS2,CBX8,POU6F1,TRA2A,RNF126,NSMCE4A,SH3BP5L,MAPKAPK5,KMT2A,REV1,SH2D3C,NEURL4,HDAC4,PNPLA7,HINFP,PCBD2,NR2C1,SLC19A1,GPR132,BRD9,CRTC2,AMY2B,APBB3,NRIP2,CNTROB,STX2,LTBP3,CYTH2,SOS1,NOP53,RUFY2,WBP1,PARP16,TEPSIN,RBM33,TRIT1,TONSL,NADSYN1,ZDHHC21,MOK,WDR37,IMMP1L,CFAP44,LRCH4,SRRT,ME3,AGAP6,GGA3,WRAP73,TPRA1,IQCN,ZXDC,GABPB2,KLHL26,NPLOC4,GEMIN8,ADAMTS10,GTPBP2,TRIM66,MAPKBP1,RBM39,EDC3,ODF2L,TNFAIP2,SLC26A6,GPATCH8,SLC25A27,MRPS26,PGS1,MSL2,IRF3,MDC1,ZCCHC8,NRF1,TMEM44,ITFG2,ZNF2,WDR91,CCDC92,KAT8,INTS3,TRIM39,C1QTNF6,PIGL,NEK3,KCTD6,ZC3H7A,BIN3,GBA2,CSAD,AGAP3,KIAA0895L,RINL,DDX39A,TBC1D10C,BAZ2A,NDUFAF6,ZNF77,ABCA2,SAMD10,GPATCH2,MUTYH,PIEZO1,ZNF74,RBM28,DCAF8,OBSL1,IKZF5,LAMA5,MFSD10,STAG3L5P-PVRIG2P-PILRB,KIF21B,ABCA5,TMEM259,PHYKPL,SF3B1,POFUT2,NHLRC2,CACTIN,FRA10AC1,EME1,FBXO10,ZBTB5,RUFY3,LIN37,OGA,ZFP69,PYCR2,IFT27,PAN3,PHKG2,NARF,PMF1,NUMBL,NIPSNAP3B,ARHGAP4,RRP1B,ASB6,KMT2E,AKT2,PPP1R16A,LRRC75B,SWSAP1,MAPK12,DCAF16,GOLGA1,ZC3H4,SUPT7L,RALGDS,QSOX2,ARHGAP9,DLG4,TM2D3,OSGEPL1,CYTH1,PACS2,ZGLP1,CUL7,PEX1,S100PBP,TRIM3,SHC2,CALCOCO1,ANKRD52,CFAP410,MTG1,USP24,ZC3H3,FAM76B,POGZ,GTPBP3,ANAPC7,ARRDC2,PLXNB2,C2CD2L,RBMX,RBM4B,EXOG,MRPS31,PCNT,ANAPC2,BEND5,C21orf58,TAF1C,UFD1,RBM14,ADNP,ADAT2,TRAF3,MAP3K12,NCOA5,SCAI,TMEM143,MBD1,GABRE,IKZF4,MYO19,ARID1B,ARHGAP45,TRAPPC14,PIP4K2B,DCAF5,PRIMPOL,BAIAP3,RHBDF1,CAPN15,CNKSR1,TCF20,SMPD4,CXXC1,SPHK2,HMGB2,SYNE4,LRP6,EZH1,MRNIP,THAP6,SS18L1,ELMOD3,DDX17,C8orf82,TRPM4,E2F5,FBXW2,FBH1,GSTM2,ING4,SLC7A6,MED15,HAUS5,SENP7,CHFR,MTRF1,RAD52,REC8,HDAC7,ARVCF,DYRK1A,NINL,MARF1,INO80,CEP290,FBXL12,SDR39U1,ZMYND19,PGGHG,TELO2,CDAN1,FBXL6,WSB1,GPALPP1,TEDC1,TRAIP,STK19,PCYOX1L,LRRC29,AUP1,PHIP,PFAS,C12orf76,ANO9,POLL,FAM228B,VPS52,MED22,NSMF,CBLN3,WASHC1,USP21,ABCC5,ELK4,KLC1,TIGD1,NSD2,GPS2,TRIM52,E2F4,NCBP3,PCBP4,NOL12,MTFR1L,SPIN2B,CRYZL1,MOSPD3,PCP2,CLASRP,PPARD,CCDC93,DFFB,DEDD,TTC13,MBD6,CWC25,STK36,CPT1B,ANKRD16,TTC32,MICAL1,BAHCC1,MTX3,SIPA1L3,FBXO31,ZMAT1,GOLGA8B,YOD1,MCM3AP,HP1BP3,SPATA33,ALPK1,ACP6,DNM1,STRADA,TAPT1,SMG9,NLRC3,CCDC88C,ZNF18,LZTS2,RERE,DIDO1,GOLGA8A,ITGAE,EMC9,CYP2R1,PAM16,PPHLN1,TCIRG1,SETD4,SPIRE2,CREBBP,CARD19,RBM48,TYSND1,PSMC3IP,PIKFYVE,AARSD1,GMEB2,DUSP28,RBM5,BOLA1,USP3,AXIN1,NKTR,YPEL3,ESRP2,SAP30BP,VPS16,ZFP28,C19orf71,ZNF17,SRCAP,DOT1L,CRBN,TTLL3,TUBE1,SLC25A45,ZNF84,LDB1,BAZ2B,RXRB,PARP6,RHBDD3,GDPGP1,BICRAL,TUBD1,CACNB3,C19orf18,WDR33,OBSCN,MTMR11,TBC1D10A,NUDT17,TRA2B,ZDHHC6,REX1BD,PCMTD1,PLEKHN1,PIAS2,LRP5L,KATNIP,ASXL1,TSC1,QRICH2,SH3GLB2,DENND4B,FASTK,TEP1,SIRT6,MAN2C1,DXO,USPL1,LZTR1,TMC6,USP20,MRPL38,WHAMM,LIG1,NELFA,PRPF4B,CCDC57,RABL2B,TRAPPC2,SIRT7,STK38 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | DUSP12,GK5,YDJC,GTF2H4,DNASE1,JOSD1,MECP2,KIZ,NFRKB,OSGEPL1,XAF1,WDR60,ZMAT1,DHPS,PGS1,ELL,DMPK,ORC2,USP36,FANCA,ZNF3,TUBGCP4,GORAB,DHX30,SPIRE2,EFHC1,TNRC18,PDZD4,SMG1,ZNF70,OXLD1,CTC1,PDDC1,HSH2D,LPAR2,ABCA5,STX16,TBC1D10C,VARS2,SPATA25,HEMK1,TBP,PIEZO1,PPP1R9B,EP400NL,REC8,UBA7,TIA1,SLC25A16,IFT140,NCBP3,C19orf44,LYSMD1,PARP2,KPNA5,ZNF14,C9orf114,SLC6A16,RGL3,PRPF40B,SETD6,URGCP,IZUMO4,LRRC27,MTMR3,CWC25,NLK,FBXL20,RASAL3,TATDN2,FAM133B,HIP1R,CELF1,ENOSF1,ZC3H6,FRA10AC1,CLASRP,VPS33B,ZC3H11A,C14orf79,TMCO6,PLIN5,YOD1,ANKRD52,VMAC,SIN3B,MZF1,BCL6,GEMIN8,NOL3,FAM160B2,ZSWIM1,VAMP1,PFAS,POLR3H,C17orf75,PAPLN,RALGPS1,KIAA0907,TMEM44,STRADA,CPNE1,HSCB,TRIM27,PKN3,MAU2,SETD4,PPCDC,ACCS,C2orf68,MAVS,GRIPAP1,TEP1,PBX4,PIK3C2B,RALGAPA1,WSB1,GGA1,RERE,IFT81,TNFRSF13C,SLC26A11,ANGEL2,SCNM1,NELFCD,ARRDC2,HSF4,FAM111A,CYTH2,SUGP1,MFSD8,C1QTNF6,NR2C2AP,PTCD1,S100PBP,TRIT1,POMT1,AARSD1,POP5,SENP5,SLX4,ERCC3,PCBD2,ZMYND19,ODF2,WDR83,BTN2A2,AP4B1,PI4KA,KIAA0556,SGSH,CIRBP | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | GLB1,MRPL37,PSMD2,PNPO,PSMD8,ATP6V1D,GYG1,RNF181,HSPA8,ELOC,HEXB,CHP1,CDK4,CALU,COX7A2,HSPA4,EMC3,GSTO1,TACO1,RPN1,UGGT1,PRELID1,LRP10,HCCS,CLIC1,NOMO1,ATP5F1B,APEH,RHOA,RAN,BTD,PLEKHB2,ATP5MC3,SNX3,ZNF622,ARPC2,TMBIM6,GPN1,ABHD5,PSMD1,SLC25A5,RPN2,CAP1,CLTC,NOMO2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000273137 | ENST00000608016 | exon_skip_1234 | chr1:11658532-11658628 | -21.03 | -0.3564 | FBXO44 | ENST00000251547,ENST00000376770 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000273137 | ENST00000608016 | exon_skip_292904 | chr17:69251746-69251866 | -14.06 | -0.1339 | ABCA5 | ENST00000392676,ENST00000588877 | In-frame | | ENSG00000273137 | ENST00000608016 | exon_skip_52671 | chr10:97461495-97461622 | -21.31 | -0.1955 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_111863 | chr14:23565815-23565892 | -15.03 | -0.1952 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_114365 | chr14:74290026-74290118 | -15.40 | -0.1925 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_302168 | chr19:10680345-10680443 | -13.69 | -0.1456 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_327433 | chr2:86125794-86125880 | -8.98 | -0.1403 | PTCD3 | ENST00000254630 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_370518 | chr22:50247691-50247776 | -20.30 | -0.2781 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_374375 | chr3:49675182-49675309 | -21.31 | -0.1791 | APEH | ENST00000296456 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_382458 | chr3:38131595-38131638 | -8.63 | -0.4794 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_470226 | chr7:103307595-103307708 | -13.16 | -0.1479 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_41813 | chr10:68337857-68337996 | -17.67 | -0.1280 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_95407 | chr12:95040475-95040597 | -16.20 | -0.1409 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_374551 | chr3:50100531-50100605 | -13.29 | -0.2179 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_442657 | chr5:74730259-74730398 | -13.80 | -0.1865 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_4796 | chr1:41007448-41007545 | -16.71 | -0.1966 | CTPS1 | ENST00000372616,ENST00000372621 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_9446 | chr1:147270931-147271005 | -9.22 | -0.3179 | CHD1L | ENST00000369258 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_41841 | chr10:68756272-68756483 | -23.89 | -0.1160 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_53559 | chr10:101793912-101793998 | -9.37 | -0.1284 | OGA | ENST00000361464 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_62623 | chr11:69079833-69079883 | -11.73 | -0.3008 | TPCN2 | ENST00000294309 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_74009 | chr11:64773429-64773505 | -12.86 | -0.1837 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_110959 | chr14:20372732-20372857 | -18.88 | -0.1656 | TEP1 | ENST00000262715 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_127618 | chr15:58890280-58890461 | -14.84 | -0.1023 | SLTM | ENST00000380516 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_133217 | chr16:8635038-8635079 | -12.07 | -0.4023 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_138351 | chr16:70469151-70469323 | -28.92 | -0.2537 | FUK | ENST00000288078 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_139422 | chr16:89114338-89114487 | -31.69 | -0.2313 | ACSF3 | ENST00000317447,ENST00000406948 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_139933 | chr16:90035632-90035687 | -9.14 | -0.1828 | GAS8 | ENST00000268699 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_290158 | chr17:42953723-42953778 | -7.29 | -0.2144 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_300663 | chr19:1425877-1425960 | -11.13 | -0.2420 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_309204 | chr19:49181348-49181461 | -19.33 | -0.1972 | TRPM4 | ENST00000252826 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_326885 | chr2:74490024-74490127 | -17.53 | -0.2191 | TTC31 | ENST00000233623 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_327748 | chr2:95410863-95411026 | -23.57 | -0.1501 | FAHD2A | ENST00000233379,ENST00000447036 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_335558 | chr2:240596680-240596942 | -42.29 | -0.1652 | CAPN10 | ENST00000391984 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_361485 | chr21:29008239-29008307 | -11.62 | -0.2278 | RWDD2B | ENST00000493196 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_365497 | chr22:38067703-38067770 | -14.34 | -0.3498 | PICK1 | ENST00000356976,ENST00000404072 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_370525 | chr22:50250426-50250523 | -21.86 | -0.2634 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_374497 | chr3:49999439-49999513 | -10.80 | -0.1895 | RBM6 | ENST00000266022 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_377198 | chr3:123130479-123130616 | -18.32 | -0.1970 | PDIA5 | ENST00000316218 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_380242 | chr3:186784961-186785101 | -14.90 | -0.1242 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_431827 | chr4:109696409-109696486 | -8.59 | -0.1193 | CASP6 | ENST00000265164 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_436035 | chr5:79656957-79657001 | -10.31 | -0.4124 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_444499 | chr5:138164086-138164133 | -6.61 | -0.2361 | BRD8 | ENST00000254900 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_511212 | chrX:71555189-71555385 | -21.61 | -0.1286 | OGT | ENST00000373719 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_59071 | chr11:47234756-47234934 | -19.34 | -0.1158 | DDB2 | ENST00000256996 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_364260 | chr22:29291561-29291599 | -9.77 | -0.3152 | EWSR1 | ENST00000397938 | Frame-shift | | ENSG00000273137 | ENST00000608016 | exon_skip_340759 | chr2:85552415-85552567 | -19.73 | -0.1419 | GGCX | ENST00000233838 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000273137 | ENSG00000004777 | ARHGAP33 | ACC,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,THCA | KIRC | | | ENSG00000273137 | ENSG00000013441 | CLK1 | ACC,BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000014914 | MTMR11 | ACC,CHOL,KIRC,KIRP,SARC | KIRC | | | ENSG00000273137 | ENSG00000060491 | OGFR | ACC,BRCA,CHOL,COAD,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,OV,PAAD,PRAD,THCA | KIRC | | | ENSG00000273137 | ENSG00000077044 | DGKD | ACC,BRCA,CHOL,COAD,GBM,KIRC,KIRP,LGG,LIHC,MESO,OV,PAAD,READ,TGCT | KIRC | | | ENSG00000273137 | ENSG00000089820 | ARHGAP4 | ACC,BRCA,CHOL,DLBC,HNSC,KIRC,LAML,LUAD,LUSC,PAAD,PRAD,UCS | KIRC | | | ENSG00000273137 | ENSG00000099331 | MYO9B | ACC,CHOL,COAD,GBM,KIRC,LAML,LUAD,LUSC,PAAD,READ,TGCT | KIRC | | | ENSG00000273137 | ENSG00000100288 | CHKB | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,SKCM,STAD,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000100429 | HDAC10 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,UCEC,UCS | KIRC | | | ENSG00000273137 | ENSG00000102125 | TAZ | ACC,BLCA,BRCA,CESC,CHOL,COAD,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,OV,PAAD,PCPG,PRAD,SKCM,THCA,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000103326 | CAPN15 | ACC,BLCA,BRCA,CHOL,COAD,DLBC,GBM,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,OV,PAAD,PCPG,PRAD,THCA,THYM | KIRC | | | ENSG00000273137 | ENSG00000104859 | CLASRP | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UVM | KIRC | | | ENSG00000273137 | ENSG00000105486 | LIG1 | ACC,CHOL,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUSC,PAAD,PRAD,SARC,TGCT,THCA | KIRC | | | ENSG00000273137 | ENSG00000105643 | ARRDC2 | ACC,BLCA,BRCA,COAD,KIRC,KIRP,LAML,MESO,PAAD,READ,UVM | KIRC | | | ENSG00000273137 | ENSG00000106462 | EZH2 | ACC,CHOL,HNSC,KIRC,KIRP,UVM | KIRC | | | ENSG00000273137 | ENSG00000107281 | NPDC1 | ACC,BRCA,HNSC,KIRC,LAML,LGG,PAAD,UCEC,UCS | KIRC | | | ENSG00000273137 | ENSG00000108773 | KAT2A | ACC,BLCA,BRCA,CHOL,DLBC,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,SKCM,THCA,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000113240 | CLK4 | ACC,BLCA,BRCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,OV,PAAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UVM | KIRC | | | ENSG00000273137 | ENSG00000123136 | DDX39A | ACC,CHOL,HNSC,KIRC,KIRP,LAML,LGG,PAAD,PRAD | KIRC | | | ENSG00000273137 | ENSG00000127586 | CHTF18 | ACC,BLCA,BRCA,CESC,CHOL,COAD,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,SKCM,THCA,UCS | KIRC | | | ENSG00000273137 | ENSG00000130653 | PNPLA7 | ACC,BRCA,GBM,KICH,KIRC,KIRP,LAML,LGG,PAAD,THCA,UVM | KIRC | | | ENSG00000273137 | ENSG00000132522 | GPS2 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000135722 | FBXL8 | ACC,BLCA,BRCA,CESC,CHOL,COAD,ESCA,HNSC,KIRC,KIRP,LAML,LUAD,LUSC,OV,PAAD,PRAD,SARC,SKCM,STAD,THCA,UCEC,UVM | KIRC | | | ENSG00000273137 | ENSG00000138834 | MAPK8IP3 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000142102 | PGGHG | ACC,BRCA,CHOL,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,OV,PAAD,SARC,SKCM,STAD,THCA,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000142303 | ADAMTS10 | ACC,BRCA,GBM,KIRC,KIRP,LAML,LGG,LIHC,LUAD,PCPG,SARC,TGCT,THCA,THYM,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000143554 | SLC27A3 | ACC,CHOL,HNSC,KIRC,KIRP,PAAD | KIRC | | | ENSG00000273137 | ENSG00000158062 | UBXN11 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,HNSC,KIRC,KIRP,LUAD,LUSC,OV,PAAD,PCPG,PRAD,READ,SKCM,TGCT,THCA,UCS | KIRC | | | ENSG00000273137 | ENSG00000158717 | RNF166 | ACC,BRCA,CHOL,COAD,GBM,HNSC,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,SKCM,UVM | KIRC | | | ENSG00000273137 | ENSG00000160781 | PAQR6 | ACC,BLCA,BRCA,CHOL,COAD,HNSC,KIRC,KIRP,LAML,LUAD,LUSC,OV,PAAD,PRAD,SKCM,THCA,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000161010 | MRNIP | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,KICH,KIRC,KIRP,LAML,LGG,OV,PAAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000162572 | SCNN1D | ACC,BRCA,CHOL,GBM,KIRC,KIRP,LAML,LGG,LIHC,LUAD,MESO,OV,PAAD,PCPG,PRAD,TGCT,THYM,UCS | KIRC | | | ENSG00000273137 | ENSG00000164403 | SHROOM1 | ACC,BRCA,CHOL,HNSC,KIRC,OV,PAAD,THCA,UCEC,UVM | KIRC | | | ENSG00000273137 | ENSG00000164877 | MICALL2 | ACC,BRCA,CESC,CHOL,COAD,HNSC,KIRC,KIRP,OV,PAAD,READ,TGCT,THCA,UCEC | KIRC | | | ENSG00000273137 | ENSG00000167615 | LENG8 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000167702 | KIFC2 | ACC,BLCA,BRCA,CESC,CHOL,COAD,GBM,HNSC,KIRC,KIRP,LAML,LIHC,OV,PAAD,READ,SARC,SKCM,THCA,THYM,UVM | KIRC | | | ENSG00000273137 | ENSG00000172890 | NADSYN1 | ACC,BLCA,CHOL,COAD,GBM,KIRC,KIRP,LAML,LGG,OV,PAAD,THCA,UCEC,UCS | KIRC | | | ENSG00000273137 | ENSG00000175265 | GOLGA8A | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000175455 | CCDC14 | ACC,BLCA,CESC,CHOL,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000177595 | PIDD1 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,OV,PAAD,SARC,SKCM,STAD,THCA,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000178026 | LRRC75B | ACC,BRCA,CHOL,COAD,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,PRAD,READ,SARC,THCA,THYM,UCEC | KIRC | | | ENSG00000273137 | ENSG00000182325 | FBXL6 | ACC,CHOL,GBM,KIRC,KIRP,LAML,LGG,THCA | KIRC | | | ENSG00000273137 | ENSG00000184445 | KNTC1 | ACC,CESC,CHOL,GBM,HNSC,KIRC,KIRP,LIHC,LUSC,MESO,READ,TGCT | KIRC | | | ENSG00000273137 | ENSG00000184465 | WDR27 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,READ,SARC,STAD,TGCT,THCA,THYM,UCEC,UCS | KIRC | | | ENSG00000273137 | ENSG00000185189 | NRBP2 | ACC,BLCA,BRCA,CESC,GBM,KIRC,KIRP,LGG,OV,READ,SARC,THCA,THYM,UCS | KIRC | | | ENSG00000273137 | ENSG00000187961 | KLHL17 | ACC,BLCA,BRCA,CHOL,COAD,DLBC,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,OV,PAAD,PCPG,PRAD,READ,SKCM,THCA,UCEC,UVM | KIRC | | | ENSG00000273137 | ENSG00000197774 | EME2 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000204149 | AGAP6 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,OV,PAAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000204305 | AGER | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,PAAD,READ,SARC,SKCM,STAD,TGCT,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000204681 | GABBR1 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,HNSC,KIRC,KIRP,PAAD,READ,SARC,SKCM,STAD,THCA,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000213903 | LTB4R | ACC,BRCA,CHOL,COAD,DLBC,GBM,KIRC,KIRP,LGG,LIHC,LUAD,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000213923 | CSNK1E | ACC,BLCA,BRCA,CHOL,COAD,GBM,KIRC,KIRP,LAML,LGG,LIHC,LUSC,MESO,PCPG,PRAD,READ,TGCT,THYM,UVM | KIRC | | | ENSG00000273137 | ENSG00000214021 | TTLL3 | ACC,BLCA,BRCA,CHOL,COAD,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS | KIRC | | | ENSG00000273137 | ENSG00000215375 | MYL5 | ACC,BLCA,BRCA,CESC,CHOL,COAD,HNSC,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PRAD,SKCM,THCA,UCEC | KIRC | | | ENSG00000273137 | ENSG00000221978 | CCNL2 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000250067 | YJEFN3 | ACC,BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LGG,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,TGCT,THYM,UCEC,UCS | KIRC | | | ENSG00000273137 | ENSG00000266338 | NBPF15 | ACC,CHOL,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,PAAD,SARC,SKCM,STAD,TGCT,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000267796 | LIN37 | ACC,BRCA,CHOL,HNSC,KIRC,KIRP,LAML,LGG,LIHC,PAAD,PCPG,PRAD,TGCT,THCA,THYM | KIRC | | | ENSG00000273137 | ENSG00000273899 | NOL12 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,SARC,SKCM,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000044446 | PHKA2 | BLCA,BRCA,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SARC,SKCM,THCA,UVM | KIRC | | | ENSG00000273137 | ENSG00000061938 | TNK2 | BLCA,BRCA,CHOL,COAD,GBM,HNSC,KIRC,LAML,LGG,LUAD,LUSC,OV,PAAD,PCPG,PRAD,THCA,THYM | KIRC | | | ENSG00000273137 | ENSG00000065357 | DGKA | BLCA,CHOL,KIRC,KIRP,LGG,LUAD,LUSC,OV,PAAD | KIRC | | | ENSG00000273137 | ENSG00000069493 | CLEC2D | BLCA,CHOL,DLBC,GBM,KIRC,KIRP,LGG,LUSC,MESO,OV,PAAD,SKCM,STAD,TGCT,THYM,UCS | KIRC | | | ENSG00000273137 | ENSG00000073605 | GSDMB | BLCA,CHOL,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,SARC,TGCT,THCA,UCS | KIRC | | | ENSG00000273137 | ENSG00000102287 | GABRE | BLCA,CESC,CHOL,HNSC,KIRC,LIHC,LUSC,PRAD,READ,SARC,TGCT,THCA | KIRC | | | ENSG00000273137 | ENSG00000109046 | WSB1 | BLCA,BRCA,CHOL,ESCA,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,TGCT,THCA,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000113108 | APBB3 | BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,OV,PAAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000117616 | RSRP1 | BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000127415 | IDUA | BLCA,BRCA,CESC,CHOL,COAD,DLBC,GBM,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,PAAD,PRAD,SKCM,THCA,UCEC | KIRC | | | ENSG00000273137 | ENSG00000130158 | DOCK6 | BLCA,CHOL,COAD,GBM,KIRC,LIHC,LUAD,PAAD,PRAD,READ,STAD | KIRC | | | ENSG00000273137 | ENSG00000139597 | N4BP2L1 | BLCA,DLBC,HNSC,KIRC,KIRP,PAAD,SARC,SKCM,THCA,UVM | KIRC | | | ENSG00000273137 | ENSG00000139631 | CSAD | BLCA,BRCA,CESC,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000139636 | LMBR1L | BLCA,BRCA,CHOL,COAD,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,SKCM,STAD,THCA,UCEC,UVM | KIRC | | | ENSG00000273137 | ENSG00000157873 | TNFRSF14 | BLCA,BRCA,CHOL,COAD,HNSC,KIRC,KIRP,LAML,LUAD,LUSC,OV,PAAD,PRAD,THCA | KIRC | | | ENSG00000273137 | ENSG00000161960 | EIF4A1 | BLCA,BRCA,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LGG,LUAD,LUSC,MESO,OV,PAAD,PRAD,READ,SKCM,TGCT,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000167604 | NFKBID | BLCA,BRCA,CHOL,COAD,GBM,HNSC,KIRC,KIRP,LAML,LUAD,LUSC,MESO,OV,PAAD,PRAD,READ,SARC,SKCM,STAD,THCA,UCS | KIRC | | | ENSG00000273137 | ENSG00000174943 | KCTD13 | BLCA,BRCA,CESC,CHOL,COAD,DLBC,HNSC,KIRC,KIRP,LAML,LUAD,LUSC,OV,PAAD,PCPG,PRAD,TGCT,THCA | KIRC | | | ENSG00000273137 | ENSG00000175309 | PHYKPL | BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LAML,LGG,OV,PAAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000181085 | MAPK15 | BLCA,BRCA,HNSC,KIRC,KIRP,OV,READ,THCA,UCS | KIRC | | | ENSG00000273137 | ENSG00000184381 | PLA2G6 | BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UVM | KIRC | | | ENSG00000273137 | ENSG00000185101 | ANO9 | BLCA,BRCA,CHOL,COAD,DLBC,HNSC,KIRC,KIRP,LAML,OV,PAAD,READ,UCEC | KIRC | | | ENSG00000273137 | ENSG00000185215 | TNFAIP2 | BLCA,HNSC,KIRC,KIRP,UVM | KIRC | | | ENSG00000273137 | ENSG00000185522 | LMNTD2 | BLCA,BRCA,CESC,CHOL,COAD,KICH,KIRC,KIRP,LIHC,OV,PAAD,THCA,THYM,UCEC | KIRC | | | ENSG00000273137 | ENSG00000186088 | GSAP | BLCA,CHOL,ESCA,HNSC,KIRC,KIRP,LIHC,PAAD,THCA | KIRC | | | ENSG00000273137 | ENSG00000186166 | CENATAC | BLCA,BRCA,CESC,CHOL,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000187583 | PLEKHN1 | BLCA,KIRC,KIRP,LUAD,PRAD,READ | KIRC | | | ENSG00000273137 | ENSG00000196123 | KIAA0895L | BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000197948 | FCHSD1 | BLCA,BRCA,CHOL,COAD,DLBC,GBM,KIRC,KIRP,OV,PAAD,READ,SARC,SKCM,STAD,THCA,UCEC | KIRC | | | ENSG00000273137 | ENSG00000215252 | GOLGA8B | BLCA,BRCA,CHOL,COAD,DLBC,ESCA,GBM,KICH,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000215440 | NPEPL1 | BLCA,BRCA,CHOL,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,THCA,THYM,UCEC,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000217930 | PAM16 | BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,HNSC,KICH,KIRC,KIRP,LGG,LUAD,PAAD,PRAD,SKCM,STAD,THCA,UVM | KIRC | | | ENSG00000273137 | ENSG00000256525 | POLG2 | BLCA,CESC,CHOL,DLBC,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,THCA,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000006062 | MAP3K14 | BRCA,KIRC,LAML,OV,PAAD,TGCT,UVM | KIRC | | | ENSG00000273137 | ENSG00000010295 | IFFO1 | BRCA,DLBC,GBM,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,OV,PAAD,PCPG,READ,SKCM,TGCT,THYM,UVM | KIRC | | | ENSG00000273137 | ENSG00000076928 | ARHGEF1 | BRCA,CHOL,COAD,DLBC,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SKCM,STAD,TGCT,THCA,UCEC,UVM | KIRC | | | ENSG00000273137 | ENSG00000091592 | NLRP1 | BRCA,CHOL,HNSC,KIRC,KIRP,LUAD,LUSC,MESO,PAAD,SKCM,STAD,TGCT,THCA | KIRC | | | ENSG00000273137 | ENSG00000129946 | SHC2 | BRCA,ESCA,GBM,KIRC,KIRP,LGG,PAAD,PCPG,PRAD,THCA,THYM | KIRC | | | ENSG00000273137 | ENSG00000135596 | MICAL1 | BRCA,CHOL,COAD,GBM,HNSC,KIRC,KIRP,LGG,OV,PAAD,SARC,TGCT | KIRC | | | ENSG00000273137 | ENSG00000139625 | MAP3K12 | BRCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,SARC,STAD,TGCT,THYM,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000160271 | RALGDS | BRCA,CHOL,COAD,HNSC,KIRC,LAML,LGG,OV,PAAD,READ,TGCT,THCA,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000162591 | MEGF6 | BRCA,COAD,GBM,HNSC,KIRC,LAML,LUAD,PRAD,READ | KIRC | | | ENSG00000273137 | ENSG00000173442 | EHBP1L1 | BRCA,COAD,KIRC,KIRP,OV,PAAD | KIRC | | | ENSG00000273137 | ENSG00000177989 | ODF3B | BRCA,HNSC,KIRC,KIRP,LUAD,LUSC,OV,PAAD,PRAD | KIRC | | | ENSG00000273137 | ENSG00000180448 | ARHGAP45 | BRCA,CHOL,KIRC,KIRP,LAML,LUAD,PAAD,STAD | KIRC | | | ENSG00000273137 | ENSG00000214193 | SH3D21 | BRCA,KIRC,LUAD,LUSC,PRAD,THCA | KIRC | | | ENSG00000273137 | ENSG00000147437 | GNRH1 | CESC,CHOL,KIRC,KIRP,PAAD | KIRC | | | ENSG00000273137 | ENSG00000072609 | CHFR | CHOL,GBM,KIRC,KIRP,LGG,LUAD,PAAD,PCPG,PRAD,THCA,UVM | KIRC | | | ENSG00000273137 | ENSG00000090924 | PLEKHG2 | CHOL,GBM,KIRC,KIRP,MESO,STAD | KIRC | | | ENSG00000273137 | ENSG00000095370 | SH2D3C | CHOL,KIRC,LAML,PAAD,TGCT | KIRC | | | ENSG00000273137 | ENSG00000104814 | MAP4K1 | CHOL,DLBC,HNSC,KIRC,LAML,LUSC,PAAD | KIRC | | | ENSG00000273137 | ENSG00000105122 | RASAL3 | CHOL,KIRC,LAML,LUAD,LUSC,PAAD | KIRC | | | ENSG00000273137 | ENSG00000123329 | ARHGAP9 | CHOL,HNSC,KIRC,LAML,LUSC,PAAD | KIRC | | | ENSG00000273137 | ENSG00000124508 | BTN2A2 | CHOL,HNSC,KIRC,TGCT,UVM | KIRC | | | ENSG00000273137 | ENSG00000128298 | BAIAP2L2 | CHOL,COAD,KIRC,LAML,LGG,READ | KIRC | | | ENSG00000273137 | ENSG00000135723 | FHOD1 | CHOL,COAD,KIRC,KIRP,LAML,LUAD,OV,PAAD,PRAD,READ,TGCT,THCA,THYM,UCEC | KIRC | | | ENSG00000273137 | ENSG00000137841 | PLCB2 | CHOL,COAD,HNSC,KIRC,LAML,LUAD,OV,PAAD | KIRC | | | ENSG00000273137 | ENSG00000138964 | PARVG | CHOL,HNSC,KIRC,LAML,PAAD | KIRC | | | ENSG00000273137 | ENSG00000154760 | SLFN13 | CHOL,KIRC,KIRP,LUAD,UCS | KIRC | | | ENSG00000273137 | ENSG00000167895 | TMC8 | CHOL,HNSC,KIRC,LAML,LUAD,LUSC,MESO,PAAD,STAD,UCS | KIRC | | | ENSG00000273137 | ENSG00000175463 | TBC1D10C | CHOL,HNSC,KIRC,LAML,PAAD,UCS | KIRC | | | ENSG00000273137 | ENSG00000180096 | SEPTIN1 | CHOL,HNSC,KIRC,LAML,LUAD,LUSC,PAAD,PCPG | KIRC | | | ENSG00000273137 | ENSG00000182472 | CAPN12 | CHOL,KIRC,KIRP,LIHC,LUAD,LUSC,PAAD | KIRC | | | ENSG00000273137 | ENSG00000185158 | LRRC37B | CHOL,GBM,KIRC,KIRP,LGG,LUAD,LUSC,OV,PAAD,PRAD,SARC,SKCM,STAD,TGCT,THCA | KIRC | | | ENSG00000273137 | ENSG00000185386 | MAPK11 | CHOL,GBM,HNSC,KIRC,LAML,LUSC,PAAD,PRAD,READ,TGCT,THYM | KIRC | | | ENSG00000273137 | ENSG00000188130 | MAPK12 | CHOL,GBM,KIRC,LAML,LGG,LUSC,MESO,PAAD,PRAD,UCS | KIRC | | | ENSG00000273137 | ENSG00000240038 | AMY2B | CHOL,GBM,KIRC,KIRP,LAML,LGG,LUAD,OV,THCA,THYM | KIRC | | | ENSG00000273137 | ENSG00000203485 | INF2 | COAD,DLBC,KIRC,KIRP,LAML,UCS | KIRC | | | ENSG00000273137 | ENSG00000205436 | EXOC3L4 | COAD,KIRC,KIRP,PAAD,READ,STAD | KIRC | | | ENSG00000273137 | ENSG00000139899 | CBLN3 | DLBC,KIRC,LUAD,LUSC,PAAD,PRAD,TGCT,THCA | KIRC | | | ENSG00000273137 | ENSG00000167984 | NLRC3 | DLBC,KIRC,LUSC,PAAD,STAD | KIRC | | | ENSG00000273137 | ENSG00000222009 | BTBD19 | DLBC,GBM,KIRC,KIRP,LUAD,PAAD,PCPG,STAD,THCA,THYM,UCS,UVM | KIRC | | | ENSG00000273137 | ENSG00000009694 | TENM1 | GBM,KIRC,KIRP,PCPG,TGCT,THCA,UCS | KIRC | | | ENSG00000273137 | ENSG00000132326 | PER2 | GBM,KIRC,KIRP,OV,SARC,STAD,TGCT,UCS | KIRC | | | ENSG00000273137 | ENSG00000132530 | XAF1 | GBM,KIRC,LUAD,OV,PAAD | KIRC | | | ENSG00000273137 | ENSG00000205268 | PDE7A | GBM,KIRC,LGG,PAAD,SKCM,STAD,TGCT,THCA,UVM | KIRC | | | ENSG00000273137 | ENSG00000143847 | PPFIA4 | KIRC,LUSC,PCPG,SARC,UCS | KIRC | | | ENSG00000273137 | ENSG00000166012 | TAF1D | KIRC,KIRP,LGG,LIHC,LUSC,PRAD,SKCM,UCS,UVM | KIRC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000273137 | ENSG00000118058 | KMT2A | ENSG00000157106 | SMG1 | 5 | GBM,LUSC,OV,SARC,STAD | | ENSG00000273137 | ENSG00000118058 | KMT2A | ENSG00000178971 | CTC1 | 5 | GBM,LUSC,OV,STAD,TGCT | | ENSG00000273137 | ENSG00000118058 | KMT2A | ENSG00000149187 | CELF1 | 5 | GBM,LUSC,OV,STAD,UCS | | ENSG00000273137 | ENSG00000118058 | KMT2A | ENSG00000058673 | ZC3H11A | 5 | LUSC,SARC,STAD,TGCT,UCS | | ENSG00000273137 | ENSG00000118058 | KMT2A | ENSG00000139645 | ANKRD52 | 5 | GBM,LUSC,OV,TGCT,UCS | | ENSG00000273137 | ENSG00000118058 | KMT2A | ENSG00000127511 | SIN3B | 5 | GBM,SARC,STAD,TGCT,UCS | | ENSG00000273137 | ENSG00000118058 | KMT2A | ENSG00000266173 | STRADA | 7 | GBM,LUSC,OV,SARC,STAD,TGCT,UCS | | ENSG00000273137 | ENSG00000118058 | KMT2A | ENSG00000129933 | MAU2 | 5 | GBM,LUSC,OV,SARC,TGCT | | ENSG00000273137 | ENSG00000118058 | KMT2A | ENSG00000188827 | SLX4 | 5 | GBM,LUSC,OV,SARC,STAD |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000273137 | ENST00000608016 | APEH | ENSG00000164062 | ENST00000469362 | -0.1021 | 1 | - | KIRC |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000273137.1 | ENST00000608016.1 | 138 | 47 | 463 |
|
