 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ITGB3BP,CYP2R1,VMP1,HSPBP1,RECQL4,JOSD2,ATP5PF,SCRN2,FBRS,PTRH2,FBXO46,TAMM41,NUP42,KIFC2,HRAS,POC5,CACNB3,ZNF48,SIRT3,CC2D1B,MRPL22,NDUFAF6,SPOUT1,FDX2,GIGYF1,UBOX5,RFNG,SREK1IP1,LRRC14,PMF1-BGLAP,MRPL47,RPL36A,FAM111A,KLHL17,VPS28,PAXBP1,MALSU1,LEMD2,NOC4L,CKLF,TTLL3,TBC1D17,NARF,TARBP2,POLG2,QARS1,FBXL6,USE1,RIN1,COP1,HMGN1,SLC25A28,YJEFN3,MIEN1,S100A11,ANAPC2,ANKRD49,KRTCAP2,SHARPIN,TEDC2,KRT10,ENDOV,MRPL52,STK36,MYL6B,SAP30BP,MZT2A,OFD1,LTB4R,TTC13,ZSWIM1,METTL17,PPP1R14B,UCKL1,SRP19,PRPF39,EPOR,MVB12A,PPAN,TXNL4A,SMG5,MROH6,PRR14,C8orf58,HSPBAP1,CPNE1,CTU2,CIR1,H2AJ,ALS2CL,DUS3L,AP5Z1,CTU1,THAP4,VPS16,CEP131,COMMD5,RGL3,PELP1,POLE,R3HDM4,GNRH1,ATP5MC2,RUVBL2,FAM228B,PHLDA3,C18orf21,RECQL5,PAQR6,ARPC4,GPS1,SLC12A9,GABBR1,CCDC102A,NDUFV3,NDUFA13,LMBR1L,ARV1,LRRC75B,HDAC8,AKT1S1,C21orf58,CDK2AP2,TMEM44,SLC25A29,RPP38,RCCD1,ZCWPW1,HEXIM2,TRAPPC2,JPT1,CCDC14,BRMS1,CCHCR1,MICOS13,PLA2G6,LRSAM1,ANKRD39,MTLN,MTX1,GTF2A2,MED7,COA8,DONSON,DNAJB2,COMMD7,FKBP2,CYBC1,PSMD13,PNKP,TPRKB,C7orf26,INPP5E,ANAPC7,RNF25,TMEM79,COMMD6,HMGN3,MIIP,BANF1,CCDC137,PHF11,SVBP,PMF1,TMEM138,C7orf50,DTYMK,TRIM46,SMYD5,NPEPL1,WDR53,CYHR1,CZIB,TBC1D10B,PFDN5,COPS9,SLX4IP,PARL,MYG1,GNG5,ATG4B,CTDNEP1,REEP4,DPM2,CARD19,KLC1,GDPGP1,PTCD1,ATP5MJ,MRPL17,ATXN7L2,BRSK1,NKIRAS2,RNF208,PARP6,ANKRD13D,SPATC1L,TMEM186,TMEM11,NDUFS6,CARS2,SEPTIN1,PCED1A,MC1R,FOXRED1,SPC24,GLMN,FAAP100,WDR5B,CTBP1,SETD4,CNTROB,OCIAD2,IRF2BP1,KHDC4,WDR83OS,LIN7B,CFAP298,GEMIN6,PSMG3,RECQL4,ENKD1,COX17,GEMIN7,FAM98C,AGAP6,NDUFB1,TMA7,MCRIP2,DUS1L,UBXN1,PRR3,PSENEN,DPH7,RFNG,LRRC14,PMF1-BGLAP,DNASE1,HEXD,PARD6A,ILKAP,WDR45,WBP1,DECR2,DENND6B,RFXANK,C1orf159,MSTO1,ALKBH4,MSANTD2,MYPOP,TRIM11,MYL5,WASHC1,SEM1,GAS8,NOL3,SPG7,RNASEH2C,CIAO2B,DCUN1D2,POLL,TRADD,MUTYH,TMUB1,PPCDC,PCSK4,ACBD6,UQCC2,CENATAC,SLC50A1,EXD3,LBHD1,ACYP1,MAPK8IP3,CCDC57,CENPS,IDUA,CCNL2,DNAJC4,SMUG1,TRAPPC2L,STK36,SWSAP1,CHTF18,LIN37,ULK3,SLC27A3,APRT,G6PC3,TRIR,NEDD8,LRRC29,PHKG2,PPP1R14B,TIMM29,EPOR,RASSF7,SMG5,PSME3IP1,HSF4,CLK2,CD2BP2,AGAP3,ERCC5,CCDC24,HEMK1,TMEM234,NDUFA2,VPS16,RABEP2,HINT2,CYSRT1,PSMG4,UBL5,WDR83,NSUN5,LRRC45,BRICD5,KCTD13,C1orf35,TMEM134,GFER,ATAT1,C12orf73,ZMYND19,GPS1,TCEA2,CHMP1A,POP5,HCN3,GOLGA8B,BLOC1S1,NDUFAF8,CCDC12,ELP6,IFT27,B4GALT2,TRPT1,FASTK,KIAA0895L,NME4,AGER,RP11-523H20.5,DXO,WDR54,MICOS13,ANKS3,C12orf76,TIMM17B,TEPSIN,FRS3,CERS5,TPRA1,YAE1,S100A13,MRPL57,COA8,GPS2,CHTOP,CSAD,MTG1,FKBP2,COX19,SPATA33,RUSC1,GOLGA8A,RNF25,ATP5IF1,EME2,FBXL12,MRPL55,RP9,CDK5,RAB4B,SAMD1,TMEM60,CCDC137,AP4M1,TMEM175,XAB2,LAMTOR2,DTX3,PPP2R3B,TMCO6,PAM16,INTS11,TBC1D10B,FBXO44,PYM1,MPLKIP,NR2C2AP,GNPTG,FAM193B,NEK8,ZBTB8OS,TFPT,NOXA1,SERF2,CENPX,FAM229A,NMRAL1,MTIF3,MICALL2,PCP2,PQBP1,TMEM208,SH2B1,COX6B1,SMIM4,KLC1,TSEN54,CRACR2B,LMNTD2,PIGC,MRPS26,FBXL8,MOGS,NAA80,MRPL20,TP53I13,PRAF2,NDUFA3,EPS8L1,TAF10,PFDN6,RHPN1,PGP,PFDN2,PCED1A,ARL16,ORMDL1,PET100,UBXN11,SCNN1D,ORAI3,IQCC,CNTROB,COX4I1,TEDC1,ECI1,THOC6,ACAP3,INO80E,TATDN2,MRPL27,DDX49,THYN1,SCAND1,NDUFAF7,CIRBP,OGFR,RBM10,PSMB3,PPIH,NADSYN1,WASHC3,UBE2M,DECR2,MIX23,EMC9,MARCHF9,IFI27L1,MYL5,FAM3A,TMEM86B,PSMA2,NDUFB11,ROGDI,ANAPC2,FKBP8,CCS,NDUFB7,ABCA7,SGF29,NDUFS8,YJU2,LRRC29,TRMT61A,COPE,TRAPPC14,GADD45GIP1,PPAN,MRPL28,PDCD6,CLTB,SNRNP25,TMEM259,DUS3L,SRM,LAMTOR4,NDUFB8,NDUFA2,ZNF593,NOSIP,NDUFB10,FAM174C,RBM39,FANCL,FAM228B,MBD3,ARPC4,ZNRF1,VKORC1,NDUFA13,UQCR11,ATP5F1D,NDUFC1,ATAD3B,CHMP2A,NME4,CFAP410,NR2F6,TIMM17B,CNPY3,RSRP1,PYURF,FAM104B,SPATA2L,ACBD4,ENTR1,RAB4B,MZT2B,NTHL1,MRGBP,LTO1,TMCO6,ARMC5,ATAD3C,INTS11,EFNA3,SLIRP,SH3BGRL3,PFDN5,LENG1,REX1BD,MCRIP1,TFPT,HIRIP3,COQ4,MYG1,PQBP1,NDUFA11,TMEM208,PEDS1,RNPS1,AP1G2,MAD1L1,MRPS15,NAT14,ANAPC11,MRPL20,NDUFA1,ZSWIM7,PGLS,UBXN11,SSU72,APBB3,DENND4B,FAM234A,TAZ,THOC6,METTL23,ATRAID,UBE2J2,DHPS,ENKD1,PSMB1,TMEM150A,HDGF,USF1,ARHGAP33,S100A10,RBM4B,FAAP20,ZNF48,SIRT3,UBXN1,CIRBP,TSSC4,SCNM1,COA5,RNF215,C14orf93,YPEL3,THAP3,B3GALT6,SNRPA,DPM3,PMF1-BGLAP,PRCC,GUK1,THOC7,SUMO1,RRNAD1,SLC66A1,BCL7C,MYO19,KAT8,ARF5,PEX16,MICOS10,PPIE,FKBP3,ANKRD10,CLASRP,HAX1,TBC1D17,PYCR2,ZMAT5,DCAF8,POLR2J,CDPF1,SNF8,TRADD,RNPEPL1,PYGO2,TRIM45,MRPS34,RBM8A,SLC50A1,MEN1,LBHD1,ZNHIT1,MAPK8IP3,KRTCAP2,MZF1,USP21,RPS27,DNAJC4,SCAMP3,OSGEP,LUC7L,PLEKHJ1,JTB,SAP30BP,OFD1,TTC13,WDR74,ZNF83,RASSF7,HSCB,SMG5,CAPN10,HSF4,CLK2,DEDD,FAM50A,ELMOD3,RETREG3,NUTF2,PAFAH1B3,METTL5,COA6,ZFYVE19,THOC1,BOLA1,NELFE,C1orf50,PSMA4,SIRT6,IMMP1L,FAM189B,H2BC21,TBCB,C1orf35,TAF1C,SURF2,THEM4,RECQL5,C2orf68,GABPB1,RPS19BP1,SARS2,LYSMD1,TMEM223,CRTC2,AARSD1,ARV1,CLN6,CWC15,IP6K2,AKT1S1,HSPB11,JMJD4,SMPD2,NDUFS3,B4GALT2,DNAJC30,KAT2A,CENPT,TRPT1,TRAPPC2,UQCR10,CHKB,TMEM9,BUD23,SBK1,TMEM101,MTX1,S100A13,CNOT11,CHTOP,USF2,PSMD13,PNKP,COA3,C19orf73,GGPS1,PPP1R7,EME2,TMEM79,MRPL55,PI4KB,C11orf98,UBL7,VPS72,WRAP73,PIDD1,CNOT9,POGZ,PMF1,RAB13,STX10,ARL8A,SART1,HDAC10,EFNA4,TRIM46,ENSA,SF3A2,CSTF3,SAC3D1,DEAF1,ZNF862,TMEM258,IMP3,LYPLA2,SIRT7,TIGD1,PMVK,SDHAF2,TMEM179B,MED19,NIT1,SGSM3,C1orf56,EIF2B4,NAP1L4,UFD1,KLHDC4,DUSP28,PTCD1,LMNTD2,VPS9D1,NPDC1,FBXL8,GPR137,POLR2I,SS18L2,SSR2,NAT9,CLK3,DYNLT2,UBE2Q1,B3GAT3,PPOX,PTOV1,ASCC2,SF3B4,ACD,GLI4,PFDN2,YY1AP1,SEPTIN1,ACP6,C19orf53,NPRL2,FLAD1,RHBDD3,BRAT1,TTC32,CDK11A,IGSF8,MRPL24,DYNC2I2,DDX41,APBB3,IRF3,ZC3HC1,ELMO3,FAM234A,BCS1L,BABAM1,NOP2,SOX12,VMP1,METTL23,HSPBP1,TXNDC17,PFN1,MAP2K2,KPTN,POLM,MIER2,PTRH2,MCRIP2,ESS2,SNRPD2,DDX49,NSMCE4A,DHX34,CENPB,SLC25A39,RBM10,MFSD10,EIF3B,ARMC7,DUT,UBE2M,MBD6,PIGL,KRTCAP3,WBP1,RFXANK,TRAF4,EMC9,ARGLU1,VPS4A,DCAF15,ITPA,MED25,TBC1D17,RPA3,MYPOP,ZMAT5,RING1,AUP1,SNRPB2,TIA1,NCAPH2,NDUFB11,TMUB1,MAGIX,CXXC1,EXD3,SMG9,ABHD17A,MAPK8IP3,OSBPL7,MZF1,COG4,LMF1,NPRL3,BICRA,METTL26,LUC7L,PLEKHJ1,VCPKMT,NEDD8,COPE,PIH1D1,TPD52L2,SYCE1L,GDPD3,RTRAF,MKS1,AGAP3,ARHGEF1,SSBP1,LPAR2,GMEB2,MOSPD3,THAP4,POLRMT,DDX56,ARFRP1,CROCC,UBL5,ARFGAP1,RBM39,MPHOSPH10,SEC61G,MAP2K7,PCBP4,ITGAE,TRA2A,CHMP1A,BTBD2,TRMU,SHC2,TLE5,DPY30,FIZ1,AKT1S1,RNF126,ARHGAP4,GTPBP3,STK11,DNAJC30,PIGQ,CHMP2A,SRRT,FASTK,FBXW4,JPT1,UQCR10,RP11-523H20.5,ATP13A1,WDR54,GFUS,BUD23,ZNF18,KRI1,RBM42,DDX39A,BCL2L12,IFT20,PDAP1,NDUFAF5,SRSF2,DERL2,PNKP,NOL12,PSMC5,SPATA33,PSME2,AXIN1,CPSF1,EME2,FBXL12,PRR7,DDA1,C3orf62,NASP,TELO2,LMF2,PRMT7,PGGHG,HSD17B7,EMG1,SNU13,SPIRE2,XAB2,SGTA,MTG2,QPCTL,KHDC1,LSM5,NAA10,RANBP3,ERCC1,TRIP10,CEP89,DDX11,FAM193B,NUDT1,NEK8,SRA1,NOXA1,CDK5RAP1,TIMM44,PCP2,AAAS,DMTF1,ATG4B,RNPS1,E2F1,PTCD1,CPSF4,CBY1,BRSK1,CAPN15,DYRK4,MOGS,PSMG2,TRIOBP,SUGP1,GIPC1,CDC37,ANKRD54,NDUFA1,PFDN6,SAMD10,TIGD5,TRAPPC12,ELOF1,RALY,PET100,CYTH2,PPP1R12C,CACTIN,SNRPB,TUSC2,SLC35C2,LSM4,NUBP2,ANO8,B3GNTL1,TOMM40,NAA38 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ANKRD39,NPDC1,SGSM3,NDUFA2,DPH7,C14orf93,YDJC,GTF2H4,MSTO1,MOGS,G6PC3,VPS72,DTX2,DHPS,PSMB3,PGLS,EID2B,ACP6,GTF2A2,OXLD1,FAM110A,LPAR2,UBXN1,STX16,VARS2,PQBP1,HEMK1,ELOF1,TMEM9,TIA1,NOSIP,E4F1,FKBP8,DYRK4,PDCD6,C9orf114,C2orf81,RGL3,FKBPL,C7orf50,RBM10,LBHD1,PIH1D1,ITPA,TATDN2,ALKBH4,CEP89,NDUFB1,PRR7,SHFM1,TIMM17B,VPS28,TUSC2,SRP14,MAPK8IP3,PSMD4,MIIP,C14orf79,TMCO6,CDC34,LAMTOR4,SSR2,MZF1,HINT2,RAD9A,S100A10,C3orf62,FAM160B2,UBALD2,BANF1,QTRT1,MYL5,FBXO46,KIAA0907,TMEM44,C14orf2,CPNE1,HSCB,NDUFB11,SETD4,RBM42,RNF126,PPCDC,NT5M,ACCS,H2AFX,CCDC137,C2orf68,NT5C,KPTN,NDUFS5,GGA1,FAM234A,MAGEF1,HIST3H2A,IFI27L1,THOC6,SCNM1,ATPIF1,S100A13,FAM195B,FAM111A,CYTH2,SBK1,TRIOBP,NR2C2AP,PTCD1,WDR13,HCFC1R1,MAP2K2,NUPL2,BABAM1,AARSD1,NEK8,GADD45GIP1,ARIH2OS,ZMYND19,CAPNS1,TRIM11,ATP5I,NUDT1,RPS27,AP4B1,NMRAL1,CIRBP,TAZ | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | PCYOX1,SMAD1,TGFBR2,CNIH1,PRKAR2A,ARHGEF12,CTNNB1,DLST,CCDC47,CES2,PNPO,HBP1,HSPA8,CSNK1A1,LARS2,USP9X,NAA50,TANGO6,RNF123,FCF1,SETD7,PDLIM5,ELF1,TMEM184C,KIAA1109,NCOA4,BTD,EIF4G1,SEC23A,IGF2R,CTDSP2,LUZP1,DDX3X,PSMC1,MPDZ,MCFD2,USP38,PPARA,ATRN,NOMO2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000273026 | ENST00000608147 | exon_skip_324294 | chr2:27774423-27774530 | -11.60 | -0.1196 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000273026 | ENST00000608147 | exon_skip_382458 | chr3:38131595-38131638 | -6.33 | -0.2183 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000273026 | ENST00000608147 | exon_skip_445390 | chr5:150403120-150403312 | -19.61 | -0.3017 | CD74 | ENST00000009530 | In-frame | | ENSG00000273026 | ENST00000608147 | exon_skip_470226 | chr7:103307595-103307708 | -14.87 | -0.1444 | PMPCB | ENST00000249269 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000273026 | ENST00000608147 | SETD7 | ENSG00000145391 | ENST00000608958 | -0.1795 | 1 | - | CHOL,BLCA | | ENSG00000273026 | ENST00000608147 | CNIH1 | ENSG00000100528 | ENST00000557659 | -0.1190 | 1 | - | CHOL | | ENSG00000273026 | ENST00000608147 | CNIH1 | ENSG00000100528 | ENST00000556113 | -0.1503 | 329 | - | CHOL | | ENSG00000273026 | ENST00000608147 | SEC23A | ENSG00000100934 | ENST00000557280 | -0.2859 | 1 | - | CHOL,BLCA | | ENSG00000273026 | ENST00000608147 | SEC23A | ENSG00000100934 | ENST00000553970 | -0.2859 | 1 | - | CHOL,BLCA | | ENSG00000273026 | ENST00000608147 | TANGO6 | ENSG00000103047 | ENST00000261778 | -0.1137 | 1 | - | CHOL | | ENSG00000273026 | ENST00000608147 | MPDZ | ENSG00000107186 | ENST00000536827 | -0.1660 | 1 | - | CHOL,BLCA | | ENSG00000273026 | ENST00000608147 | MPDZ | ENSG00000107186 | ENST00000447879 | -0.1660 | 1 | - | CHOL,BLCA | | ENSG00000273026 | ENST00000608147 | MPDZ | ENSG00000107186 | ENST00000546205 | -0.3100 | 240 | - | CHOL,BLCA | | ENSG00000273026 | ENST00000608147 | PNPO | ENSG00000108439 | ENST00000583245 | -0.1242 | 1 | - | CHOL | | ENSG00000273026 | ENST00000608147 | PNPO | ENSG00000108439 | ENST00000225573 | -0.2191 | 1 | - | CHOL | | ENSG00000273026 | ENST00000608147 | PNPO | ENSG00000108439 | ENST00000585320 | -0.2151 | 1 | - | CHOL | | ENSG00000273026 | ENST00000608147 | BTD | ENSG00000169814 | ENST00000449107 | -0.1295 | 20 | - | CHOL | | ENSG00000273026 | ENST00000608147 | BTD | ENSG00000169814 | ENST00000303498 | -0.1295 | 1 | - | CHOL | | ENSG00000273026 | ENST00000608147 | BTD | ENSG00000169814 | ENST00000437172 | -0.1295 | 1 | - | CHOL | | ENSG00000273026 | ENST00000608147 | BTD | ENSG00000169814 | ENST00000383778 | -0.1295 | 1 | - | CHOL | | ENSG00000273026 | ENST00000608147 | CES2 | ENSG00000172831 | ENST00000564420 | -0.1063 | 1 | - | CHOL | | ENSG00000273026 | ENST00000608147 | PCYOX1 | ENSG00000116005 | ENST00000264441 | -0.1179 | 1 | - | CHOL,KIRP |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000273026.1 | ENST00000608147.1 | 63 | 110 | 301 |
|
