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lncRNA: ENSG00000272821

Summary for CTA-384D8.36

Gene summary

Gene information	Ensembl ID	ENSG00000272821
	Gene symbol	CTA-384D8.36
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for CTA-384D8.36

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000272821	3.041487e+02	1.819323e+00	1.272239e-01	1.430017e+01	2.180000e-46	4.560000e-45	UP	KIRC
ENSG00000272821	3.200749e+02	1.166664e+00	2.443572e-01	4.774418e+00	1.800000e-06	1.500000e-05	UP	BLCA
ENSG00000272821	1.000365e+03	3.079229e+00	6.461078e-01	4.765813e+00	1.880000e-06	4.290000e-05	UP	CESC
ENSG00000272821	5.640339e+02	1.758066e+00	1.826611e-01	9.624743e+00	6.290000e-22	1.580000e-20	UP	HNSC
ENSG00000272821	2.896094e+02	1.485560e+00	1.674679e-01	8.870714e+00	7.270000e-19	1.540000e-17	UP	KIRP
ENSG00000272821	2.091630e+02	1.191253e+00	1.615979e-01	7.371714e+00	1.680000e-13	1.530000e-12	UP	UCEC
ENSG00000272821	3.513559e+02	1.497444e+00	3.275887e-01	4.571110e+00	4.850000e-06	1.058000e-04	UP	ESCA
ENSG00000272821	2.452255e+02	1.068339e+00	8.941352e-02	1.194829e+01	6.630000e-33	7.580000e-32	UP	BRCA

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000272821	4.025812e-01	2.837259e-04	ACC	3.242581e-03
ENSG00000272821	4.912091e-01	6.118586e-04	CHOL	1.161564e-03
ENSG00000272821	3.934715e-01	5.990156e-24	KIRC	8.294062e-23

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lncRNA-Protein interaction for CTA-384D8.36

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000272821	ENST00000608319	CTA-384D8.36	ENSG00000167967	E4F1	67.01	91.0609	Q66K89	TF	NA
ENSG00000272821	ENST00000608319	CTA-384D8.36	ENSG00000130254	SAFB2	65.32	93.0681	Q14151	TF,RBP	NA
ENSG00000272821	ENST00000608319	CTA-384D8.36	ENSG00000099326	MZF1	59.88	90.1402	P28698	TF	NA
ENSG00000272821	ENST00000608319	CTA-384D8.36	ENSG00000104885	DOT1L	53.48	94.0731	Q8TEK3	TF,Epi	NA
ENSG00000272821	ENST00000608319	CTA-384D8.36	ENSG00000135899	SP110	39.17	93.595	Q9HB58	TF	NA
ENSG00000272821	ENST00000608319	CTA-384D8.36	ENSG00000154832	CXXC1	36.59	92.2161	Q9P0U4	TF,Epi	NA
ENSG00000272821	ENST00000608319	CTA-384D8.36	ENSG00000123685	BATF3	22.51	90.2726	Q9NR55	TF	NA
ENSG00000272821	ENST00000608319	CTA-384D8.36	ENSG00000065029	ZNF76	19.5	91.6241	P36508	TF	NA
ENSG00000272821	ENST00000608319	CTA-384D8.36	ENSG00000136630	HLX	10.69	92.9524	Q14774	TF	NA
ENSG00000272821	ENST00000608319	CTA-384D8.36	ENSG00000167766	ZNF83	6.38	90.2374	P51522	TF	NA
ENSG00000272821	ENST00000608319	CTA-384D8.36	ENSG00000112511	PHF1	2.3	90.6169	O43189	TF,Epi	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000272821	ENST00000608319	CTA-384D8.36	ENSG00000130254	SAFB2	65.32	93.0988	Q14151	TF,RBP	NA
ENSG00000272821	ENST00000608319	CTA-384D8.36	ENSG00000004534	RBM6	63.32	93.2022	P78332	RBP	NA
ENSG00000272821	ENST00000608319	CTA-384D8.36	ENSG00000205937	RNPS1	12.47	91.2673	Q15287	RBP	NA

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lncRNA-DNA interaction for CTA-384D8.36

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CTA-384D8.36

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

SPICE1,IDH3A,ERGIC2,NEK4,CMTM4,SAV1,AP5M1,ARID1A,MARCHF6,RNF123,TBC1D5,MAP4K3,RDX,ESD,CCNC,PPP1R12A,GNL3L,TMEM161B,KIAA1109,VTI1B,STRN3,TBC1D15,MTUS1,KAT6B,EDEM1,ITPR2,EIF4G1,PTK2,RAB7A,C11orf58,FRG1BP,FCHO2,MAT2B,PBRM1,PBX1,TRAK1,SCRN1,ANKRD28,PSMC1,HEATR6,VPS13B,SRP72,MAN1A2,L2HGDH,MRPL19,UBXN2B,ATP11B,PRRC2C,SNX19,PHKB,GPRC5B,ACBD5,ARFIP1,PAK2,CPEB4,LONP2,CDK4,ARID1B,STRN,EPS8,RPRD1B,TMEM33,TTC3,SH3BP5,KIDINS220,PCCB,ABRAXAS1,SELENOP,REPS1,GTF2H3,TMCO3,SMARCC1,PCDH1,APPBP2,BRD3,EID1,ETFDH,SEC23A,JKAMP,MKLN1,MFSD9,ITSN2,MTMR12,RB1CC1,SMAD1,ERGIC1,ABHD2,TM9SF1,NBAS,HSPA9,FBXW8,UBE4B,TP53BP2,NDST1,FXR1,POM121,POC1B,CCDC121,MSH6,FOXN3,MAIP1,MARCHF7,OSBPL8,PEX5,NCOA4,FBH1,GNPDA2,TMED1,MTRR,TMEM123,AZI2,DCP1A,DCAF7,VAMP7,GPATCH8,ALMS1,FASTKD2,ATP8B1,MED1,CNOT6L,CNST,EIF4G2,HBP1,CD46,CDC23,CLASP1,NAA50,SHQ1,GON4L,CAB39,PRKAR1A,MIS18BP1,FARP1,RB1,KMT2E,CHPT1,NSRP1,TLK1,CPD,RABEP1,GTPBP8,ARFGEF1,ZFP30,ATF1,UBFD1,LATS1,BCKDHB,RPRD1A,FYCO1,SPOPL,HMGCR,NOMO2,CASD1,LRP6,CLIP4,OCIAD1,PHF6,FAM168B,TASP1,SINHCAF,DLST,PNPO,WDR11,VPS4B,UHRF1BP1L,TRAPPC11,KLHL28,PFKM,NAF1,FRS2,TOM1L1,FOXJ3,EHBP1,LARP1,UBXN7,NPEPPS,FASTKD5,UQCRC2,ITGB1,RCHY1,BZW1,DCTN4,ZFAND1,SCOC,SLAIN2,PPAT,PDXDC1,PUM1,KANSL1L,FNDC3A,SEC24B,RABL3,ZFP1,KMT2D,ZNF714,CTNNB1,BCL2L13,ANAPC1,CEP57,FBXO21,MAPK14,RSBN1,RNF111,TP53BP1,TFDP2,TUBGCP4,WDR48,STRBP,INPP5A,PPIP5K2,USP32,G3BP1,GIGYF2,RASSF8,WBP11,PRKACB,PIAS1,PRMT5,UBE3C,TWF1,SRP54,DDX3X,ALG10B,SLC25A15,ASXL2,NIPBL,ALAS1,POLR2B,ESF1,BAZ2A,LZTFL1,LMBR1,SORL1,RGP1,PIKFYVE,DDHD2,ACVR1,TMEM263,EIF3C,ASH1L,SLC35A5,NFX1,RAB18,TRIM4,GNPTAB,C16orf70,USP19,LIG3,VPS50,MED13,WDR7,TMEM131,USP46,SMG6,HACL1,SCO1,SPRING1,KIAA0232,PKP2,ST13,TRIP12,AKAP10,PDCD6IP,GTF2A1,ALDH5A1,SARAF,GGCX,PRKAA1,NEO1,MYO18A,SOS1,SMAD5,FLNB,MRPS30,GOSR1,ATP1A1,TTC37,ELF1,OSBPL1A,PIGO,RPE,GCC2,TAF2,CHD6,SLC25A30,TEX2,AKAP1,MED21,HEATR5A,RUSF1,THOC2,MPRIP,DOCK1,CTDSP2,CCNK,MLH1,MARCHF8,NCOR1,ZFYVE9,FNBP1L,SDAD1,SCAF11,CDH1,CNOT1,NF1,DSTYK,TRAP1,FEZ2,SLC11A2,SERINC5,NUP155,SECISBP2L,VPS41,UBR1,SEPTIN10,DAG1,MINDY1,DHX40,PCDHGC3,CHD8,TAOK3,RAB3GAP1,TSR1,SNX14,KIAA0100,ARHGAP21,UBE4A,EPM2A,CCDC126,RAB5A,CDV3,DNAJC14,COBLL1,PDHX,ZC3H11A,VGLL4,ABHD17B,THTPA,LIMA1,CUL4B,SPRED2,KTN1,MCCC2,C5orf24,MFSD6,ATP2C1,SDHD,SGMS1,PTPN4,SNRK,UBE2D3,IREB2,SEPTIN11,MIPEP,RFFL,ARNT,RAD50,FAM219B,API5,BCKDHA,ATF2,MAML2,DCAF11,NCOA2,RC3H2,DNAJC18,DYNC2H1,WLS,BCL2L2,POT1,RNF169,MAPK1,UBR5,RAB11FIP1,MIER3,SSR1,DYNLT3,USP9X,ROCK2,NGRN,DESI2,UEVLD,SMAP1,SATB1,UBA2,RBM41,CHURC1,SOCS7,TMLHE,KLHL5,EPS15,FMO4,LYSMD3,OSBPL9,TIRAP,NDUFB5,CCNG1,PEX19,PPARA,GFM2,ANKRD26,PIGS,NUBPL,USP7,GALC,RABGAP1,PPP2R5C,KIF2A,PPIG,EIF3L,REST,PLS1,LARS2,CS,BACE1,RANBP2,DCAF17,RTF1,IL6ST,AFF1,MRTFB,USP8,FAM114A2,FYTTD1,TCEAL1,ITFG1,UTP23,ABCD3,CPSF2,SPG11,ASNSD1,GLYR1,ZHX1,RALGAPA1,IBTK,FER,RAB6A,VPS26C,TAX1BP1,AEBP2,CEP170,OXSR1,NT5C2,ZMYND11,RALGAPB,HIPK1,RNF40,QTRT2,EPB41,NOP14,ANKRD46,SPIRE1,CEP104,HBS1L,TRIM37,PTPN11,SCYL2,ADGRL2,POLR2A,PEX1,ANKFY1,DNAJC11,NR2C2,AHCYL2,CLTC,CREBRF,PARG,SDHC,EPB41L5,ATP2A2,SON,PAIP1,BIRC2,PTPRG,HSPA8,M6PR,SNX29,ABCB7,APAF1,MXI1,ASCC1,BBX,CDYL,TAF1,PCNX1,ERLIN2,ACADSB,UBR4,EIF2A,SMARCA2,SLMAP,PLEKHA5,CMTR2,CIPC,GSTCD,ASPH,STRAP,UFSP2,ZDHHC3,EML1,FPGT,GTPBP10,ARHGAP5,CLCC1,NKIRAS1,MPDZ,MFSD14A,PPP1CB,EIF3J,FTO,USP30,COPB2,CLCN4,HSD17B4,PRPS1,PDLIM5,KIF13B,DYNC1LI2,KBTBD4,SLC25A13,APP,RASA1,PUM2,MBTPS1,PCMT1,MED13L,PHC3,COG6,MYO10,DDB1,SIK3,ABHD5,KLHDC2,SERINC3,DOCK9,PIGN,SBF2,TBC1D23,ATP9B,PAIP2,RHOT1,SNX4,NEK7,FAM160B1,SEC22C,RO60,CSNK1G3,HEATR5B,BIRC6,ACADM,PPM1A,SEC31A,DENND5B,CYFIP1,DNAJA3,BCOR,BDP1,SYNRG,EVC,TMEM135,USP10,WWC2,MIA3,KIAA1191,DLG1,AFAP1,MCFD2,NDUFS1,MPHOSPH9

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000272821	ENST00000608319	exon_skip_285471	chr17:3723287-3723383	-12.54	-0.1529	ITGAE	ENST00000263087	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000272821	ENST00000608319	exon_skip_353131	chr20:58669290-58669453	-30.46	-0.2017	STX16	ENST00000371141	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_380242	chr3:186784961-186785101	-14.85	-0.1326	EIF4A2	ENST00000323963	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_445390	chr5:150403120-150403312	-26.62	-0.1496	CD74	ENST00000009530	In-frame
ENSG00000272821	ENST00000608319	exon_skip_9446	chr1:147270931-147271005	-11.62	-0.1761	CHD1L	ENST00000369258	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_38175	chr1:234398381-234398553	-15.52	-0.1078	TARBP1	ENST00000040877	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_41813	chr10:68337857-68337996	-23.56	-0.1785	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_53559	chr10:101793912-101793998	-12.02	-0.1939	OGA	ENST00000361464	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_87733	chr12:120571190-120571291	-15.44	-0.1608	RNF10	ENST00000325954	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_92074	chr12:50142052-50142110	-6.32	-0.1090	CERS5	ENST00000317551	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_95407	chr12:95040475-95040597	-19.35	-0.1825	NR2C1	ENST00000333003	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_95500	chr12:96003837-96003920	-10.20	-0.1821	LTA4H	ENST00000228740	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_96024	chr12:109090008-109090207	-22.87	-0.1243	ALKBH2	ENST00000343075,ENST00000429722	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_139933	chr16:90035632-90035687	-12.14	-0.3281	GAS8	ENST00000268699	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_302168	chr19:10680345-10680443	-12.61	-0.1449	ILF3	ENST00000590261	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_319223	chr19:43526200-43526349	-25.45	-0.1858	ETHE1	ENST00000292147	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_356108	chr20:34740362-34743341	-70.40	-0.1034	NCOA6	ENST00000359003,ENST00000374796	In-frame
ENSG00000272821	ENST00000608319	exon_skip_363747	chr22:23877720-23877869	-27.37	-0.1837	SLC2A11	ENST00000345044	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_370518	chr22:50247691-50247776	-15.57	-0.1832	HDAC10	ENST00000216271	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_377198	chr3:123130479-123130616	-20.76	-0.1716	PDIA5	ENST00000316218	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_382458	chr3:38131595-38131638	-8.15	-0.2145	ACAA1	ENST00000333167	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_387016	chr3:121788283-121788432	-17.98	-0.1405	IQCB1	ENST00000310864	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_430434	chr4:82356536-82356683	-13.11	-0.1016	HNRNPD	ENST00000313899	In-frame
ENSG00000272821	ENST00000608319	exon_skip_438307	chr5:141974803-141974955	-13.51	-0.1081	RNF14	ENST00000347642,ENST00000356143,ENST00000394519,ENST00000394520	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_442657	chr5:74730259-74730398	-15.89	-0.1347	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_470226	chr7:103307595-103307708	-11.26	-0.1211	PMPCB	ENST00000249269	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_481699	chr8:19824802-19824972	-13.03	-0.1010	INTS10	ENST00000397977	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_484062	chr8:73030335-73030395	-10.42	-0.2672	TERF1	ENST00000276603	In-frame
ENSG00000272821	ENST00000608319	exon_skip_511212	chrX:71555189-71555385	-20.23	-0.1405	OGT	ENST00000373719	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_5818	chr1:45568484-45568684	-25.15	-0.1454	AKR1A1	ENST00000351829,ENST00000372070	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_153096	chr17:44074968-44075087	-19.13	-0.1839	G6PC3	ENST00000269097	Frame-shift
ENSG00000272821	ENST00000608319	exon_skip_120741	chr15:34228428-34228589	-16.93	-0.1152	EMC4	ENST00000267750	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for CTA-384D8.36

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000272821	ENST00000608319	RASSF8	ENSG00000123094	ENST00000539545	-0.1381	465	-	KIRC,BLCA,CESC,KIRP,UCEC
ENSG00000272821	ENST00000608319	FBXO21	ENSG00000135108	ENST00000548840	-0.1250	1	-	KIRC,KIRP,UCEC
ENSG00000272821	ENST00000608319	SLMAP	ENSG00000163681	ENST00000416658	-0.1036	79	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	SLMAP	ENSG00000163681	ENST00000495364	-0.2102	123	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	SLMAP	ENSG00000163681	ENST00000494088	-0.1698	350	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	LRP6	ENSG00000070018	ENST00000543091	-0.3311	405	-	CESC
ENSG00000272821	ENST00000608319	SEC23A	ENSG00000100934	ENST00000548032	-0.1177	1	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	SEC23A	ENSG00000100934	ENST00000557280	-0.1059	113	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	SEC23A	ENSG00000100934	ENST00000553970	-0.1059	113	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	SLC25A15	ENSG00000102743	ENST00000470509	-0.1270	256	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	ABCD3	ENSG00000117528	ENST00000315713	-0.1131	251	-	KIRC,HNSC
ENSG00000272821	ENST00000608319	ROCK2	ENSG00000134318	ENST00000401753	-0.1284	127	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	CMTM4	ENSG00000183723	ENST00000561680	-0.1452	214	-	KIRC,KIRP,ESCA
ENSG00000272821	ENST00000608319	CMTM4	ENSG00000183723	ENST00000563952	-0.1056	186	-	KIRC,KIRP,ESCA
ENSG00000272821	ENST00000608319	CIPC	ENSG00000198894	ENST00000555437	-0.2693	504	-	BLCA,HNSC,KIRP
ENSG00000272821	ENST00000608319	CIPC	ENSG00000198894	ENST00000555611	-0.1267	379	-	BLCA,HNSC,KIRP
ENSG00000272821	ENST00000608319	ALAS1	ENSG00000023330	ENST00000484952	-0.1365	319	-	KIRC
ENSG00000272821	ENST00000608319	ALAS1	ENSG00000023330	ENST00000493402	-0.2932	386	-	KIRC
ENSG00000272821	ENST00000608319	SMARCA2	ENSG00000080503	ENST00000382186	-0.7243	703	-	KIRP,UCEC
ENSG00000272821	ENST00000608319	COBLL1	ENSG00000082438	ENST00000629362	-0.2294	69	-	KIRC,ESCA,BRCA
ENSG00000272821	ENST00000608319	BCKDHB	ENSG00000083123	ENST00000369760	-0.4553	1	-	KIRC,HNSC,ESCA
ENSG00000272821	ENST00000608319	L2HGDH	ENSG00000087299	ENST00000261699	-0.6729	236	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	L2HGDH	ENSG00000087299	ENST00000555423	-0.4065	16	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	L2HGDH	ENSG00000087299	ENST00000555610	-0.1319	385	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	DCAF11	ENSG00000100897	ENST00000560457	-0.1658	250	-	KIRC
ENSG00000272821	ENST00000608319	DCAF11	ENSG00000100897	ENST00000558706	-0.1586	121	-	KIRC
ENSG00000272821	ENST00000608319	DCAF11	ENSG00000100897	ENST00000560614	-0.1384	72	-	KIRC
ENSG00000272821	ENST00000608319	DCAF11	ENSG00000100897	ENST00000557888	-0.1658	235	-	KIRC
ENSG00000272821	ENST00000608319	DCAF11	ENSG00000100897	ENST00000559451	-0.1360	90	-	KIRC
ENSG00000272821	ENST00000608319	DCAF11	ENSG00000100897	ENST00000559144	-0.1146	98	-	KIRC
ENSG00000272821	ENST00000608319	HMGCR	ENSG00000113161	ENST00000509085	-0.1019	74	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	HMGCR	ENSG00000113161	ENST00000511986	-0.1019	75	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	PCCB	ENSG00000114054	ENST00000251654	-0.1434	1	-	KIRC
ENSG00000272821	ENST00000608319	PCCB	ENSG00000114054	ENST00000490504	-0.1434	1	-	KIRC
ENSG00000272821	ENST00000608319	PCCB	ENSG00000114054	ENST00000483687	-0.1434	1	-	KIRC
ENSG00000272821	ENST00000608319	PCCB	ENSG00000114054	ENST00000468777	-0.1434	1	-	KIRC
ENSG00000272821	ENST00000608319	PCCB	ENSG00000114054	ENST00000462637	-0.1434	1	-	KIRC
ENSG00000272821	ENST00000608319	PCCB	ENSG00000114054	ENST00000466072	-0.1434	1	-	KIRC
ENSG00000272821	ENST00000608319	PCCB	ENSG00000114054	ENST00000482086	-0.1434	1	-	KIRC
ENSG00000272821	ENST00000608319	PCCB	ENSG00000114054	ENST00000469217	-0.1434	1	-	KIRC
ENSG00000272821	ENST00000608319	EHBP1	ENSG00000115504	ENST00000405015	-2.0225	401	-	UCEC,BRCA
ENSG00000272821	ENST00000608319	CCDC121	ENSG00000176714	ENST00000394775	-0.2988	408	-	UCEC
ENSG00000272821	ENST00000608319	ACADM	ENSG00000117054	ENST00000420607	-0.7867	426	-	KIRC,HNSC,KIRP
ENSG00000272821	ENST00000608319	ITPR2	ENSG00000123104	ENST00000242737	-0.2474	508	-	KIRC,HNSC,KIRP
ENSG00000272821	ENST00000608319	ANKRD46	ENSG00000186106	ENST00000519316	-0.2597	403	-	KIRP
ENSG00000272821	ENST00000608319	ACADSB	ENSG00000196177	ENST00000368869	-0.1001	77	-	KIRC,HNSC,KIRP,ESCA
ENSG00000272821	ENST00000608319	SELENOP	ENSG00000250722	ENST00000507920	-0.1004	263	-	BLCA,KIRP,UCEC,BRCA
ENSG00000272821	ENST00000608319	SEPTIN10	ENSG00000186522	ENST00000437928	-0.1338	360	-	BLCA,UCEC
ENSG00000272821	ENST00000608319	SEPTIN10	ENSG00000186522	ENST00000415095	-0.1009	98	-	BLCA,UCEC
ENSG00000272821	ENST00000608319	ST13	ENSG00000100380	ENST00000413424	-0.1515	270	-	CESC,UCEC
ENSG00000272821	ENST00000608319	TRIM4	ENSG00000146833	ENST00000447480	-0.3405	457	-	CESC,UCEC
ENSG00000272821	ENST00000608319	DYNLT3	ENSG00000165169	ENST00000432389	-0.3735	324	-	KIRP
ENSG00000272821	ENST00000608319	FEZ2	ENSG00000171055	ENST00000414288	-0.1217	279	-	CESC,UCEC
ENSG00000272821	ENST00000608319	EID1	ENSG00000255302	ENST00000560490	-0.4192	371	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	PDLIM5	ENSG00000163110	ENST00000512274	-0.1101	260	-	BLCA,CESC,HNSC,UCEC
ENSG00000272821	ENST00000608319	PDLIM5	ENSG00000163110	ENST00000509357	-0.1127	196	-	BLCA,CESC,HNSC,UCEC
ENSG00000272821	ENST00000608319	LARS2	ENSG00000011376	ENST00000414984	-0.2670	386	-	KIRC
ENSG00000272821	ENST00000608319	NDUFS1	ENSG00000023228	ENST00000449699	-0.1639	199	-	KIRC,HNSC
ENSG00000272821	ENST00000608319	NDUFS1	ENSG00000023228	ENST00000432169	-0.1639	199	-	KIRC,HNSC
ENSG00000272821	ENST00000608319	NDUFS1	ENSG00000023228	ENST00000456284	-0.1197	108	-	KIRC,HNSC
ENSG00000272821	ENST00000608319	AP5M1	ENSG00000053770	ENST00000431972	-0.2490	387	-	KIRC
ENSG00000272821	ENST00000608319	KIAA1191	ENSG00000122203	ENST00000510164	-0.1050	107	-	KIRP,ESCA
ENSG00000272821	ENST00000608319	KIAA1191	ENSG00000122203	ENST00000533553	-0.1749	233	-	KIRP,ESCA
ENSG00000272821	ENST00000608319	MED13L	ENSG00000123066	ENST00000552340	-0.1074	398	-	UCEC
ENSG00000272821	ENST00000608319	MTUS1	ENSG00000129422	ENST00000519263	-0.1031	181	-	KIRP
ENSG00000272821	ENST00000608319	SCRN1	ENSG00000136193	ENST00000434476	-0.1375	457	-	KIRC
ENSG00000272821	ENST00000608319	SCRN1	ENSG00000136193	ENST00000409570	-0.5007	484	-	KIRC
ENSG00000272821	ENST00000608319	OSBPL1A	ENSG00000141447	ENST00000357041	-0.3541	611	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	OSBPL1A	ENSG00000141447	ENST00000578013	-0.4383	731	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	OSBPL1A	ENSG00000141447	ENST00000578055	-0.1735	573	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	PRKACB	ENSG00000142875	ENST00000370684	-0.1714	567	-	BLCA,UCEC,ESCA
ENSG00000272821	ENST00000608319	MYO10	ENSG00000145555	ENST00000515803	-0.1094	102	-	KIRC
ENSG00000272821	ENST00000608319	MYO10	ENSG00000145555	ENST00000505695	-0.1958	425	-	KIRC
ENSG00000272821	ENST00000608319	PCDH1	ENSG00000156453	ENST00000394536	-0.1396	1	-	KIRC,HNSC,KIRP
ENSG00000272821	ENST00000608319	INPP5A	ENSG00000068383	ENST00000368593	-0.8850	319	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	ATP8B1	ENSG00000081923	ENST00000591728	-0.1065	356	-	KIRC,KIRP,ESCA
ENSG00000272821	ENST00000608319	SH3BP5	ENSG00000131370	ENST00000450625	-0.1079	205	-	CESC,KIRP,UCEC,ESCA
ENSG00000272821	ENST00000608319	SORL1	ENSG00000137642	ENST00000525532	-0.1170	180	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	SORL1	ENSG00000137642	ENST00000532694	-0.1170	173	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	SORL1	ENSG00000137642	ENST00000527934	-0.1170	180	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	EPS8	ENSG00000151491	ENST00000540613	-0.1849	722	-	CESC,UCEC,BRCA
ENSG00000272821	ENST00000608319	EPS8	ENSG00000151491	ENST00000542903	-0.2243	657	-	CESC,UCEC,BRCA
ENSG00000272821	ENST00000608319	GPRC5B	ENSG00000167191	ENST00000569847	-0.2589	377	-	KIRC,HNSC,KIRP,BRCA
ENSG00000272821	ENST00000608319	DAG1	ENSG00000173402	ENST00000435508	-0.2293	420	-	KIRC
ENSG00000272821	ENST00000608319	KIF13B	ENSG00000197892	ENST00000523130	-1.0450	140	-	KIRC,HNSC
ENSG00000272821	ENST00000608319	USP46	ENSG00000109189	ENST00000508499	-0.3064	122	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	USP46	ENSG00000109189	ENST00000512656	-0.1962	132	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	EPM2A	ENSG00000112425	ENST00000367519	-0.1264	1	-	KIRC,KIRP,BRCA
ENSG00000272821	ENST00000608319	EPM2A	ENSG00000112425	ENST00000611340	-0.1264	1	-	KIRC,KIRP,BRCA
ENSG00000272821	ENST00000608319	EPB41L5	ENSG00000115109	ENST00000331393	-0.1038	282	-	KIRC
ENSG00000272821	ENST00000608319	WLS	ENSG00000116729	ENST00000527864	-0.1227	376	-	KIRC,BLCA,KIRP,ESCA,BRCA
ENSG00000272821	ENST00000608319	WWC2	ENSG00000151718	ENST00000508614	-0.1596	1	-	KIRP
ENSG00000272821	ENST00000608319	ZFYVE9	ENSG00000157077	ENST00000357206	-0.1364	202	-	KIRP
ENSG00000272821	ENST00000608319	ATP1A1	ENSG00000163399	ENST00000295598	-0.1057	252	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	ATP1A1	ENSG00000163399	ENST00000537345	-0.1188	254	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	ATP1A1	ENSG00000163399	ENST00000369496	-0.1188	254	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	ATP1A1	ENSG00000163399	ENST00000440951	-0.1513	397	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	TCEAL1	ENSG00000172465	ENST00000372626	-0.5700	497	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	SLC25A30	ENSG00000174032	ENST00000618165	-0.1007	37	-	KIRC
ENSG00000272821	ENST00000608319	CHURC1	ENSG00000258289	ENST00000548752	-0.1003	415	-	BLCA,UCEC
ENSG00000272821	ENST00000608319	CHURC1	ENSG00000258289	ENST00000547625	-0.3980	758	-	BLCA,UCEC
ENSG00000272821	ENST00000608319	DNAJC11	ENSG00000007923	ENST00000451196	-0.1053	310	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	PTPN4	ENSG00000088179	ENST00000431283	-0.6860	357	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	PTPN4	ENSG00000088179	ENST00000441089	-0.6557	218	-	KIRC,KIRP
ENSG00000272821	ENST00000608319	PCDHGC3	ENSG00000240184	ENST00000611950	-0.1942	283	-	BLCA,UCEC
ENSG00000272821	ENST00000608319	PCDHGC3	ENSG00000240184	ENST00000617222	-0.6521	355	-	BLCA,UCEC
ENSG00000272821	ENST00000608319	PPP1R12A	ENSG00000058272	ENST00000550299	-0.1700	104	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	PPP1R12A	ENSG00000058272	ENST00000546369	-0.1500	220	-	BLCA,CESC,UCEC
ENSG00000272821	ENST00000608319	ZMYND11	ENSG00000015171	ENST00000602682	-0.1559	154	-	CESC
ENSG00000272821	ENST00000608319	SMG6	ENSG00000070366	ENST00000536871	-0.2028	291	-	UCEC
ENSG00000272821	ENST00000608319	PCNX1	ENSG00000100731	ENST00000554691	-0.1011	475	-	BRCA
ENSG00000272821	ENST00000608319	PCNX1	ENSG00000100731	ENST00000555780	-0.1290	24	-	BRCA
ENSG00000272821	ENST00000608319	MPDZ	ENSG00000107186	ENST00000536827	-0.1192	368	-	BLCA,UCEC,ESCA,BRCA
ENSG00000272821	ENST00000608319	MPDZ	ENSG00000107186	ENST00000447879	-0.1192	369	-	BLCA,UCEC,ESCA,BRCA
ENSG00000272821	ENST00000608319	MPDZ	ENSG00000107186	ENST00000546205	-0.3706	309	-	BLCA,UCEC,ESCA,BRCA

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000272821.1	ENST00000608319.1	201	175	780

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential