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lncRNA: ENSG00000272686

Summary for WASL-DT

Gene summary

Gene information	Ensembl ID	ENSG00000272686
	Gene symbol	WASL-DT
	Gene name	WASL divergent transcript
	HGNC	54820
	Entrez ID	116435299
	Gene type	antisense
	Synonyms	WASL-DT\|07q31.32\|RP11-390E23.6
	UniProtAcc

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Structure and expression level for WASL-DT

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000272686	2.012784e+02	-1.122596e+00	2.152322e-01	-5.215744e+00	1.830000e-07	1.380000e-06	DOWN	CHOL
ENSG00000272686	1.900952e+02	-1.270084e+00	1.111450e-01	-1.142727e+01	3.060000e-30	8.180000e-29	DOWN	COAD
ENSG00000272686	2.038487e+02	-1.313264e+00	2.008458e-01	-6.538667e+00	6.210000e-11	2.110000e-09	DOWN	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000272686	-3.984816e-01	1.099135e-04	KICH	1.845631e-04

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lncRNA-Protein interaction for WASL-DT

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000272686	ENST00000607957	RP11-390E23.6	ENSG00000181555	SETD2	65.94	93.9469	Q9BYW2	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for WASL-DT

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for WASL-DT

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

RELB,SPHK1,DTX2,SLC16A3,GRAMD1A,PRKD2,CFL1,TCIRG1,CDC42EP1,LIMK1,EFHD2,SIL1,ARHGDIA,PML,RAB31,MFSD10,BMP1,MYH9,CHST11,NFKB2,MED15,RELT,PLAUR,PGAP6,PPP1R14B,SIPA1,RHOG,NECTIN2,EMP3,CSK,PKM,ATP13A2,TAGLN2,PDLIM7,RIN3,MAD2L2,FPGS,CD276,FXYD5,ADGRE5,MAN2B1,TMEM161A,CLN6,PFN1,CTSB,SLC9A1,SLC52A2,SHKBP1,CMTM3,GYS1,HAPLN3,TMSB10,VASP,IFITM3,P4HB,CCDC124,VPS18,GAPDH,SDF2L1,DOHH,SERPINH1,SLC35C1,CHPF,KIAA0930,PTGES2,CTSD,GPX1,CD151,PLXND1,NCLN,TWF2,LGALS1,SEC61A1,TYMP

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000272686	hsa-mir-142	ENST00000607957	chr7:123750664-123750746	216.00	-74.28	86	NA
ENSG00000272686	hsa-mir-142	ENST00000607957	chr7:123750351-123750434	175.00	-65.18	86	NA
ENSG00000272686	hsa-mir-142	ENST00000607957	chr7:123749866-123749956	172.00	-70.17	86	NA
ENSG00000272686	hsa-mir-142	ENST00000607957	chr7:123750939-123751030	161.00	-70.25	88	NA
ENSG00000272686	hsa-mir-142	ENST00000607957	chr7:123750791-123750884	160.00	-72.97	94	NA
ENSG00000272686	hsa-mir-142	ENST00000607957	chr7:123749597-123749697	159.00	-78.68	96	NA
ENSG00000272686	hsa-mir-142	ENST00000607957	chr7:123749391-123749486	155.00	-86.29	90	NA
ENSG00000272686	hsa-mir-142	ENST00000607957	chr7:123750499-123750588	155.00	-74.29	88	NA
ENSG00000272686	hsa-mir-142	ENST00000607957	chr7:123750029-123750112	150.00	-70.24	86	NA
ENSG00000272686	hsa-mir-142	ENST00000607957	chr7:123751046-123751132	142.00	-65.06	84	NA
ENSG00000272686	hsa-mir-142	ENST00000607957	chr7:123750204-123750294	141.00	-68.29	91	NA
ENSG00000272686	hsa-mir-21	ENST00000607957	chr7:123749250-123749317	176.00	-65.85	65	NA
ENSG00000272686	hsa-mir-21	ENST00000607957	chr7:123750014-123750088	171.00	-60.15	64	NA
ENSG00000272686	hsa-mir-21	ENST00000607957	chr7:123749626-123749699	158.00	-57.46	72	NA
ENSG00000272686	hsa-mir-21	ENST00000607957	chr7:123750925-123750992	155.00	-50.76	69	NA
ENSG00000272686	hsa-mir-21	ENST00000607957	chr7:123750174-123750251	154.00	-61.37	76	NA
ENSG00000272686	hsa-mir-21	ENST00000607957	chr7:123749420-123749495	151.00	-71.99	69	NA
ENSG00000272686	hsa-mir-21	ENST00000607957	chr7:123750524-123750597	147.00	-58.55	70	NA
ENSG00000272686	hsa-mir-21	ENST00000607957	chr7:123749116-123749189	142.00	-82.79	73	NA
ENSG00000272686	hsa-mir-21	ENST00000607957	chr7:123749873-123749953	141.00	-58.67	80	NA
ENSG00000272686	hsa-mir-21	ENST00000607957	chr7:123750322-123750390	141.00	-51.71	69	NA
ENSG00000272686	hsa-mir-27a	ENST00000607957	chr7:123749382-123749459	193.00	-67.98	78	NA
ENSG00000272686	hsa-mir-27a	ENST00000607957	chr7:123749890-123749964	193.00	-60.93	70	NA
ENSG00000272686	hsa-mir-27a	ENST00000607957	chr7:123751048-123751124	193.00	-54.31	66	NA
ENSG00000272686	hsa-mir-27a	ENST00000607957	chr7:123750528-123750613	185.00	-64.79	81	NA
ENSG00000272686	hsa-mir-27a	ENST00000607957	chr7:123749461-123749552	178.00	-79.06	85	NA
ENSG00000272686	hsa-mir-27a	ENST00000607957	chr7:123749283-123749361	174.00	-77.85	78	NA
ENSG00000272686	hsa-mir-27a	ENST00000607957	chr7:123750342-123750418	163.00	-52.46	70	NA
ENSG00000272686	hsa-mir-27a	ENST00000607957	chr7:123749777-123749863	151.00	-53.87	73	NA
ENSG00000272686	hsa-mir-27a	ENST00000607957	chr7:123749119-123749203	148.00	-87.35	77	NA
ENSG00000272686	hsa-mir-27a	ENST00000607957	chr7:123750974-123751054	144.00	-60.45	74	NA
ENSG00000272686	hsa-mir-27a	ENST00000607957	chr7:123749571-123749647	143.00	-73.67	76	NA
ENSG00000272686	hsa-mir-27a	ENST00000607957	chr7:123749215-123749286	141.00	-69.51	73	NA
ENSG00000272686	hsa-mir-155	ENST00000607957	chr7:123750697-123750765	188.00	-51.83	66	NA
ENSG00000272686	hsa-mir-155	ENST00000607957	chr7:123749973-123750044	168.00	-52.47	68	NA
ENSG00000272686	hsa-mir-155	ENST00000607957	chr7:123749901-123749971	165.00	-51.04	68	NA
ENSG00000272686	hsa-mir-155	ENST00000607957	chr7:123750961-123751032	160.00	-53.01	67	NA

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Variants for WASL-DT

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000272686	ENST00000607957	CD276	ENSG00000103855	ENST00000567582	-0.1399	14	COAD,READ	-
ENSG00000272686	ENST00000607957	CD276	ENSG00000103855	ENST00000561176	-0.2957	402	COAD,READ	-
ENSG00000272686	ENST00000607957	IFITM3	ENSG00000142089	ENST00000399808	-0.1601	18	COAD,READ	-
ENSG00000272686	ENST00000607957	IFITM3	ENSG00000142089	ENST00000531688	-0.1107	9	COAD,READ	-
ENSG00000272686	ENST00000607957	IFITM3	ENSG00000142089	ENST00000602735	-0.2698	128	COAD,READ	-
ENSG00000272686	ENST00000607957	IFITM3	ENSG00000142089	ENST00000526811	-0.2698	128	COAD,READ	-
ENSG00000272686	ENST00000607957	RELT	ENSG00000054967	ENST00000544075	-0.1216	1	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	TMEM161A	ENSG00000064545	ENST00000162044	-0.1489	1	COAD,READ	-
ENSG00000272686	ENST00000607957	TMEM161A	ENSG00000064545	ENST00000587985	-0.1077	1	COAD,READ	-
ENSG00000272686	ENST00000607957	TMEM161A	ENSG00000064545	ENST00000587583	-0.1489	1	COAD,READ	-
ENSG00000272686	ENST00000607957	FXYD5	ENSG00000089327	ENST00000392219	-0.1603	1	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	FXYD5	ENSG00000089327	ENST00000541435	-0.1663	1	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	FXYD5	ENSG00000089327	ENST00000590686	-0.1647	1	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	FXYD5	ENSG00000089327	ENST00000342879	-0.1565	1	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	FXYD5	ENSG00000089327	ENST00000588699	-0.1211	1	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	FXYD5	ENSG00000089327	ENST00000423817	-0.1555	1	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	FXYD5	ENSG00000089327	ENST00000392217	-0.1656	1	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	GRAMD1A	ENSG00000089351	ENST00000599564	-0.1956	1	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	GRAMD1A	ENSG00000089351	ENST00000317991	-0.1956	1	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	GRAMD1A	ENSG00000089351	ENST00000411896	-0.1956	1	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	GRAMD1A	ENSG00000089351	ENST00000424536	-0.1412	1	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	MFSD10	ENSG00000109736	ENST00000514800	-0.1089	1	CHOL,READ	-
ENSG00000272686	ENST00000607957	MFSD10	ENSG00000109736	ENST00000355443	-0.1136	22	CHOL,READ	-
ENSG00000272686	ENST00000607957	MFSD10	ENSG00000109736	ENST00000329687	-0.1136	22	CHOL,READ	-
ENSG00000272686	ENST00000607957	MFSD10	ENSG00000109736	ENST00000508221	-0.1146	1	CHOL,READ	-
ENSG00000272686	ENST00000607957	MFSD10	ENSG00000109736	ENST00000507555	-0.1142	30	CHOL,READ	-
ENSG00000272686	ENST00000607957	MAD2L2	ENSG00000116670	ENST00000235310	-0.1390	1	COAD,READ	-
ENSG00000272686	ENST00000607957	MAD2L2	ENSG00000116670	ENST00000376692	-0.1390	1	COAD,READ	-
ENSG00000272686	ENST00000607957	MAD2L2	ENSG00000116670	ENST00000376672	-0.1262	4	COAD,READ	-
ENSG00000272686	ENST00000607957	MAD2L2	ENSG00000116670	ENST00000376669	-0.2321	34	COAD,READ	-
ENSG00000272686	ENST00000607957	MAD2L2	ENSG00000116670	ENST00000376667	-0.4258	341	COAD,READ	-
ENSG00000272686	ENST00000607957	CHPF	ENSG00000123989	ENST00000243776	-0.1125	4	COAD,READ	-
ENSG00000272686	ENST00000607957	CHPF	ENSG00000123989	ENST00000535926	-0.1125	5	COAD,READ	-
ENSG00000272686	ENST00000607957	CHPF	ENSG00000123989	ENST00000373891	-0.1080	214	COAD,READ	-
ENSG00000272686	ENST00000607957	FPGS	ENSG00000136877	ENST00000373228	-0.1868	1	READ	-
ENSG00000272686	ENST00000607957	HAPLN3	ENSG00000140511	ENST00000359595	-0.1281	1	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	HAPLN3	ENSG00000140511	ENST00000562889	-0.1893	1	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	PTGES2	ENSG00000148334	ENST00000338961	-0.1110	1	READ	-
ENSG00000272686	ENST00000607957	PTGES2	ENSG00000148334	ENST00000617202	-0.1087	1	READ	-
ENSG00000272686	ENST00000607957	PTGES2	ENSG00000148334	ENST00000277462	-0.1087	1	READ	-
ENSG00000272686	ENST00000607957	SERPINH1	ENSG00000149257	ENST00000530284	-0.1355	13	CHOL,COAD,READ	-
ENSG00000272686	ENST00000607957	TYMP	ENSG00000025708	ENST00000395680	-0.7158	62	READ	-
ENSG00000272686	ENST00000607957	TYMP	ENSG00000025708	ENST00000395681	-0.7158	62	READ	-
ENSG00000272686	ENST00000607957	TYMP	ENSG00000025708	ENST00000252029	-0.7158	62	READ	-
ENSG00000272686	ENST00000607957	TYMP	ENSG00000025708	ENST00000613148	-0.7158	65	READ	-
ENSG00000272686	ENST00000607957	TYMP	ENSG00000025708	ENST00000395678	-0.7158	66	READ	-

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000272686	WASL-DT,hsa-mir-155,AMIGO1	THCA,UCS,PAAD,SARC,THYM
ENSG00000272686	WASL-DT,hsa-mir-155,IFT140	THCA,UCS,PAAD,SARC,THYM
ENSG00000272686	WASL-DT,hsa-mir-155,KBTBD7	THCA,UCS,PAAD,SARC,THYM
ENSG00000272686	WASL-DT,hsa-mir-155,PNMA8A	THCA,UCS,PAAD,SARC,THYM
ENSG00000272686	WASL-DT,hsa-mir-155,KLHDC10	THCA,UCS,PAAD,SARC,THYM
ENSG00000272686	WASL-DT,hsa-mir-155,OBSL1	THCA,UCS,PAAD,SARC,THYM
ENSG00000272686	WASL-DT,hsa-mir-155,NGRN	THCA,UCS,PAAD,SARC,THYM
ENSG00000272686	WASL-DT,hsa-mir-155,SALL2	THCA,UCS,PAAD,SARC,THYM
ENSG00000272686	WASL-DT,hsa-mir-21,ANKRD46	CESC,THCA,PAAD,SARC,THYM
ENSG00000272686	WASL-DT,hsa-mir-21,FHL1	CESC,BRCA,THCA,PAAD,SARC
ENSG00000272686	WASL-DT,hsa-mir-21,NDN	CESC,BRCA,PAAD,SARC,THYM
ENSG00000272686	WASL-DT,hsa-mir-21,FAM107A	BRCA,THCA,PAAD,SARC,THYM
ENSG00000272686	WASL-DT,hsa-mir-21,GPRASP2	CESC,BRCA,THCA,PAAD,SARC
ENSG00000272686	WASL-DT,hsa-mir-21,ST3GAL3	CESC,BRCA,PAAD,SARC,THYM
ENSG00000272686	WASL-DT,hsa-mir-21,CRY2	CESC,BRCA,THCA,PAAD,SARC
ENSG00000272686	WASL-DT,hsa-mir-21,KLHL15	BRCA,THCA,PAAD,SARC,THYM

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000272686.1	ENST00000607957.1	74	409	185

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential