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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000272669

Summary for RP3-508I15.21

check button Gene summary

Gene informationEnsembl ID

ENSG00000272669

Gene symbol

RP3-508I15.21

Gene name
HGNC
Entrez ID
Gene typeantisense
Synonyms
UniProtAcc

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Structure and expression level for RP3-508I15.21

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002726696.367485e+011.523241e+003.802851e-014.005523e+006.190000e-052.827800e-04UPCHOL
ENSG000002726694.945435e+012.051914e+001.621233e-011.265650e+011.030000e-361.450000e-35UPKIRC
ENSG000002726696.748219e+011.065041e+002.181288e-014.882624e+001.050000e-064.750000e-06UPHNSC
ENSG000002726695.519618e+011.155572e+002.400481e-014.813918e+001.480000e-066.260000e-06UPKIRP
ENSG000002726697.446388e+011.092580e+001.726521e-016.328214e+002.480000e-101.790000e-09UPPRAD
ENSG000002726694.633157e+011.336904e+003.178758e-014.205742e+002.600000e-052.306640e-04UPREAD

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002726693.485742e-011.891522e-03ACC9.245919e-03
ENSG000002726695.799419e-012.977557e-05CHOL1.353582e-04

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lncRNA-Protein interaction for RP3-508I15.21

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

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lncRNA-DNA interaction for RP3-508I15.21

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP3-508I15.21

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
IDH3A,ERGIC2,NEK4,TCP1,PSMD2,AP5M1,ARID1A,UPRT,BECN1,RFC1,RDX,SMARCC2,SMCR8,TNPO3,PPP1R12A,GNL3L,LRBA,KIAA1109,STAU2,TBC1D15,EDEM1,ITPR2,EIF4G1,RAB7A,C11orf58,CREBBP,MAT2B,PBRM1,PBX1,TRAK1,HEATR6,PSMC1,VPS13B,SRP72,MAN1A2,SNX9,PCYOX1,TIPRL,L2HGDH,CSNK1G1,ATP11B,PRKAG1,SNX19,VPS35L,PHKB,PDPK1,ENOPH1,PHF3,ARFIP1,ACBD5,TRAK2,PAK2,CPEB4,LONP2,TMEM127,CDK4,STRN,CALD1,GOLIM4,LRP10,KIDINS220,CDC27,SELENOP,NT5DC1,TMCO3,ABAT,FBXO11,EID1,SEC23A,JKAMP,MKLN1,ARHGEF9,ATP5PB,MFSD9,TXNRD1,MTMR12,PSME3,RAB35,RB1CC1,SMAD1,ERGIC1,WIPF2,TM9SF1,AGFG1,LPCAT3,TM7SF3,ZFAND3,HSPA9,FBXW8,UBE4B,NDST1,VPS35,BRPF3,YAP1,CCDC121,POC1B,ARL1,COMMD2,FOXN3,GTF3C3,ATP5F1B,OSBPL8,RALBP1,NCOA4,FBH1,SNX3,KAT7,AZI2,SELENOT,UBAP2L,ACTR2,DCAF7,VAMP7,GPATCH8,MRPL49,NSF,SEC23B,MED1,GTF2I,NUP58,HBP1,EIF4G2,IPO9,GID4,CLASP1,SMG8,CAB39,HUWE1,PRKAR1A,BACH1,GOLM2,ATL1,DDX1,TRIO,TLK1,CPD,BTD,NOTCH2,SUCO,DPP8,EFL1,ATF1,FNDC3B,UBFD1,ADAT1,BCKDHB,LATS1,RPRD1A,FYCO1,DLD,SPOPL,NOMO2,RAP1GDS1,ASB8,PARP1,FAM168B,PHF6,DHTKD1,DLST,APPL2,PNPO,XPO7,VPS4B,UHRF1BP1L,SUSD6,SNX12,CHP1,PMM2,PFKM,ALG1,FRS2,TOM1L1,UCHL5,FAM104A,SCP2,FOXJ3,EDC4,EHBP1,ENTPD5,LARP1,UBXN7,SP2,NPEPPS,DAG1,UQCRC2,GBA,MPPE1,RHOA,TOGARAM1,ITGB1,BZW1,FITM2,DCTN4,NLN,SLAIN2,PPAT,ATP6V0C,PDXDC1,CANT1,ARIH1,PUM1,OS9,C1orf43,HELZ,BTBD9,SEC24B,RABL3,SFT2D2,GLB1,ZFP1,KCTD10,FAM91A1,CTNNB1,MAZ,BCL2L13,FUBP1,EXOC7,AP3D1,FBXO21,MAPK14,TP53BP1,VPS37A,TUBGCP4,WDR48,RYK,COMMD10,USP32,SNX30,GIGYF2,RASSF8,TFCP2,WBP11,MORF4L1,LRRC40,RPS6KA3,SLC25A24,PRMT5,CSE1L,CCNI,TWF1,SRP54,C9orf64,LUZP1,AFF4,DDX3X,IPO5,SLC25A15,ASXL2,ALAS1,TARS1,POLR2B,FRYL,CEP350,RGP1,PIKFYVE,MYOF,ACVR1,USP13,ATP5F1A,HSPG2,BFAR,EIF3C,ASH1L,SLC35A5,RAB18,GNPTAB,C16orf70,VPS50,MED13,RAP1B,BPNT2,WDR7,GALK2,KDSR,USP46,SMG6,ADNP2,SPRING1,KIAA0232,NUP98,KIAA0586,TRIM23,TAF6,ARHGEF18,CDK12,TRIP12,SRPK2,AKAP10,ME2,TM9SF4,MICU1,ALDH5A1,GTF2A1,GGCX,NEO1,SOS1,SMAD5,SLC12A6,CSNK1A1,IQCK,TUBGCP3,TTC37,CTNNA1,OSBPL1A,MIEF1,PIGO,RPE,VRK2,TAF2,CAST,SLC25A30,TEX2,SMIM15,MED21,PDCD10,HEATR5A,FEM1B,AMBRA1,RUSF1,CANX,TMBIM6,MPRIP,HAUS2,CCNK,CTDSP2,AFG3L2,EMC1,WSB2,SCAF11,TCTN3,CNOT1,ARL6IP5,DIABLO,DSTYK,NF1,CAMSAP2,MBP,TRAP1,CEBPZ,FEZ2,PCNX4,MYH9,SLC11A2,HERC2,FCF1,RTL6,EIF4G3,NUP155,STX17,VPS41,UBR1,ACTR3,SEPTIN10,SECISBP2L,NOP9,CHD8,DHX40,TAOK3,RAB3GAP1,PCDHGC3,MED14,TSR1,STAMBP,KIAA0100,TCAIM,ARPP19,ARHGAP21,CUL4A,IARS1,UBE4A,VPS26A,DCUN1D1,ERBIN,CAP1,COBLL1,PDHX,WASF2,VGLL4,MACF1,DHX8,SH3GLB1,NBR1,LRRC59,THTPA,NUMB,CUL4B,SPRED2,C5orf24,MCCC2,CCNY,ILK,MR1,MEX3C,RRN3,HEG1,UBE2D3,SNRK,DYNC1I2,DOCK7,IREB2,SEPTIN11,DAZAP2,RFFL,CLIP1,SART3,RAD50,FAM219B,API5,BCKDHA,IQGAP2,ZFPL1,ATF2,NCOA2,SNAP23,BCL2L2,SMC3,CCSER2,RNF169,AP2B1,MAPK1,CNIH1,FAM168A,PRKAR2A,RAB5C,GNS,ACTR10,URB1,SSR1,USP9X,C1orf109,UEVLD,SMAP1,MFSD1,UBA2,DCTN1,TGFBRAP1,WNK1,NONO,SSH1,CHURC1,PPP4R2,TMLHE,KLHL5,EPS15,LYSMD3,OSBPL9,TIRAP,ZYG11B,CCNG1,PPARA,GFM2,PPP1R3D,PIGS,HYOU1,NUBPL,MTHFD1,APH1B,SNX2,ANTXR2,KIF2A,OGDH,REST,EIF3L,RAB3D,SEC62,SOS2,LARS2,CS,BACE1,POLK,IDS,CCDC91,ACTN4,BRF2,ETFRF1,DCAF17,IL6ST,BLOC1S6,CARM1,MRTFB,USP8,FAM114A2,SNX18,TECPR2,ITFG1,ABCD3,USP14,SETD2,CPSF2,ECD,NIF3L1,SPG11,FAM172A,GNA12,ASNSD1,GLYR1,VPS13C,LANCL1,IBTK,FER,PALLD,ATL3,RAB6A,CMIP,TNS3,TUBA1B,GSK3B,QKI,VPS26C,TAX1BP1,EXOC5,AEBP2,BOD1L1,CEP170,OXSR1,NT5C2,ZMYND11,RALGAPB,HIPK1,RNF40,PIK3CB,TACC1,CDKL5,SNX6,TRAPPC10,ANKRD46,LATS2,PSEN1,SPIRE1,CEP104,SMAD4,TRIM37,PTPN11,CAPN7,SCYL2,MID2,PLEKHB2,AMN1,GORASP2,POLR2A,KCTD3,ANKFY1,UBR7,CLTC,ATRN,AP1AR,CTNND1,PARG,SDHC,ATP2A2,LZIC,PIK3C3,CCDC47,HIBADH,CSDE1,HSPA8,M6PR,RIOX2,SNX29,APAF1,GBF1,ASCC1,BBX,CDYL,TAF1,PCNX1,ERLIN2,EIF2A,ZNF720,IQGAP1,SMARCA2,EEA1,SLMAP,CLCN3,CMTR2,CIPC,GSTCD,EML1,STK24,ARHGAP5,CLCC1,NKIRAS1,MPDZ,CSNK2A1,MFSD14A,PPP1CB,FTO,IKBKG,USP30,KDM1B,UBN1,COPB2,CLCN4,ALDH6A1,HSD17B4,SEC14L1,NOA1,PRPS1,ESYT1,ARSB,RETSAT,ZFYVE1,PDLIM5,DYNC1LI2,VEZT,KBTBD4,MIDEAS,SLC25A13,ZNF106,RASA1,ACTR6,CDS2,DYM,STT3A,APP,CERT1,PTPN9,MBTPS1,SWAP70,KDM6A,MED13L,SF3A1,SEPTIN2,SNX1,OPA1,COG6,DDB1,BCL9L,ABHD5,MAPRE2,FAM118B,TAF1B,SERINC3,PSMD10,DOCK9,SYNJ1,TBC1D23,PIGN,ERC1,TNPO1,PAIP2,RHOT1,ADCY3,SNX4,ACLY,NEK7,SEC22C,RO60,MAPK9,HEATR5B,ACADM,SEC31A,MDH1,TBC1D9B,CYFIP1,ZNF28,LSM12,ARL2BP,TMEM184C,RTN4,ARL5A,DENND5A,BCOR,DNAJA3,SYNRG,EVC,EIF2AK4,USP10,SEC24C,KIAA1191,AFAP1,MCFD2,NDUFS1,SLC39A6,MPHOSPH9
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
lncRNA and exonskipping events positive correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation
ENSG00000272669ENST00000609212exon_skip_99856chr13:39042104-39042305-15.60-0.1130NHLRC3ENST00000379600In-frame
ENSG00000272669ENST00000609212exon_skip_17679chr1:211312719-211312961-23.94-0.1019RCOR3ENST00000367005Frame-shift

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000272669ENST00000609212exon_skip_52671chr10:97461495-97461622-17.41-0.1404MMS19ENST00000370782,ENST00000438925Frame-shift
ENSG00000272669ENST00000609212exon_skip_6457chr1:52083339-52083541-23.74-0.1297BTF3L4ENST00000313334Frame-shift
ENSG00000272669ENST00000609212exon_skip_430434chr4:82356536-82356683-15.42-0.1063HNRNPDENST00000313899In-frame
ENSG00000272669ENST00000609212exon_skip_38175chr1:234398381-234398553-13.71-0.1008TARBP1ENST00000040877Frame-shift
ENSG00000272669ENST00000609212exon_skip_41813chr10:68337857-68337996-15.71-0.1415HNRNPH3ENST00000265866Frame-shift
ENSG00000272669ENST00000609212exon_skip_95407chr12:95040475-95040597-18.82-0.2068NR2C1ENST00000333003Frame-shift
ENSG00000272669ENST00000609212exon_skip_133217chr16:8635038-8635079-12.11-0.3460METTL22ENST00000381920Frame-shift
ENSG00000272669ENST00000609212exon_skip_309204chr19:49181348-49181461-18.46-0.2051TRPM4ENST00000252826Frame-shift
ENSG00000272669ENST00000609212exon_skip_353131chr20:58669290-58669453-28.74-0.2068STX16ENST00000371141Frame-shift
ENSG00000272669ENST00000609212exon_skip_370518chr22:50247691-50247776-18.34-0.2293HDAC10ENST00000216271Frame-shift
ENSG00000272669ENST00000609212exon_skip_380242chr3:186784961-186785101-15.70-0.1154EIF4A2ENST00000323963Frame-shift
ENSG00000272669ENST00000609212exon_skip_382458chr3:38131595-38131638-8.87-0.2464ACAA1ENST00000333167Frame-shift
ENSG00000272669ENST00000609212exon_skip_436035chr5:79656957-79657001-8.25-0.3587TENT2ENST00000296783,ENST00000428308,ENST00000453514Frame-shift
ENSG00000272669ENST00000609212exon_skip_444499chr5:138164086-138164133-8.20-0.2216BRD8ENST00000254900Frame-shift
ENSG00000272669ENST00000609212exon_skip_4796chr1:41007448-41007545-15.69-0.2038CTPS1ENST00000372616,ENST00000372621Frame-shift
ENSG00000272669ENST00000609212exon_skip_9446chr1:147270931-147271005-12.30-0.1809CHD1LENST00000369258Frame-shift
ENSG00000272669ENST00000609212exon_skip_11029chr1:154989559-154989707-22.27-0.1536FLAD1ENST00000292180Frame-shift
ENSG00000272669ENST00000609212exon_skip_29583chr1:114780109-114780215-13.77-0.1465SIKE1ENST00000060969Frame-shift
ENSG00000272669ENST00000609212exon_skip_41841chr10:68756272-68756483-22.47-0.1075CCAR1ENST00000265872Frame-shift
ENSG00000272669ENST00000609212exon_skip_53559chr10:101793912-101793998-14.25-0.3476OGAENST00000361464Frame-shift
ENSG00000272669ENST00000609212exon_skip_87733chr12:120571190-120571291-17.31-0.1945RNF10ENST00000325954Frame-shift
ENSG00000272669ENST00000609212exon_skip_92074chr12:50142052-50142110-6.44-0.2800CERS5ENST00000317551Frame-shift
ENSG00000272669ENST00000609212exon_skip_95500chr12:96003837-96003920-9.97-0.1917LTA4HENST00000228740Frame-shift
ENSG00000272669ENST00000609212exon_skip_110959chr14:20372732-20372857-16.24-0.1504TEP1ENST00000262715Frame-shift
ENSG00000272669ENST00000609212exon_skip_127618chr15:58890280-58890461-17.70-0.1157SLTMENST00000380516Frame-shift
ENSG00000272669ENST00000609212exon_skip_138351chr16:70469151-70469323-22.19-0.1337FUKENST00000288078Frame-shift
ENSG00000272669ENST00000609212exon_skip_139933chr16:90035632-90035687-8.90-0.3560GAS8ENST00000268699Frame-shift
ENSG00000272669ENST00000609212exon_skip_290158chr17:42953723-42953778-8.77-0.2249AARSD1ENST00000427569Frame-shift
ENSG00000272669ENST00000609212exon_skip_292904chr17:69251746-69251866-17.55-0.1950ABCA5ENST00000392676,ENST00000588877In-frame
ENSG00000272669ENST00000609212exon_skip_302168chr19:10680345-10680443-11.16-0.2067ILF3ENST00000590261Frame-shift
ENSG00000272669ENST00000609212exon_skip_313557chr19:5786748-5786845-18.60-0.2114DUS3LENST00000309061Frame-shift
ENSG00000272669ENST00000609212exon_skip_319223chr19:43526200-43526349-22.89-0.1761ETHE1ENST00000292147Frame-shift
ENSG00000272669ENST00000609212exon_skip_324294chr2:27774423-27774530-10.59-0.1557MRPL33ENST00000296102Frame-shift
ENSG00000272669ENST00000609212exon_skip_326885chr2:74490024-74490127-18.56-0.1838TTC31ENST00000233623Frame-shift
ENSG00000272669ENST00000609212exon_skip_327433chr2:86125794-86125880-7.30-0.1304PTCD3ENST00000254630Frame-shift
ENSG00000272669ENST00000609212exon_skip_335558chr2:240596680-240596942-41.41-0.1630CAPN10ENST00000391984Frame-shift
ENSG00000272669ENST00000609212exon_skip_363747chr22:23877720-23877869-26.18-0.1897SLC2A11ENST00000345044Frame-shift
ENSG00000272669ENST00000609212exon_skip_364260chr22:29291561-29291599-10.89-0.3025EWSR1ENST00000397938Frame-shift
ENSG00000272669ENST00000609212exon_skip_370525chr22:50250426-50250523-17.01-0.2330HDAC10ENST00000216271Frame-shift
ENSG00000272669ENST00000609212exon_skip_374497chr3:49999439-49999513-11.51-0.2257RBM6ENST00000266022Frame-shift
ENSG00000272669ENST00000609212exon_skip_374551chr3:50100531-50100605-13.09-0.1769RBM5ENST00000347869Frame-shift
ENSG00000272669ENST00000609212exon_skip_377198chr3:123130479-123130616-19.07-0.1526PDIA5ENST00000316218Frame-shift
ENSG00000272669ENST00000609212exon_skip_387016chr3:121788283-121788432-15.63-0.1124IQCB1ENST00000310864Frame-shift
ENSG00000272669ENST00000609212exon_skip_438188chr5:141638954-141639021-14.88-0.2221RELL2ENST00000297164,ENST00000444782Frame-shift
ENSG00000272669ENST00000609212exon_skip_442657chr5:74730259-74730398-14.67-0.1128GFM2ENST00000296805,ENST00000509430Frame-shift
ENSG00000272669ENST00000609212exon_skip_445390chr5:150403120-150403312-28.09-0.1633CD74ENST00000009530In-frame
ENSG00000272669ENST00000609212exon_skip_446770chr5:178215275-178215430-19.73-0.1324PHYKPLENST00000308158Frame-shift
ENSG00000272669ENST00000609212exon_skip_470226chr7:103307595-103307708-13.37-0.1611PMPCBENST00000249269Frame-shift
ENSG00000272669ENST00000609212exon_skip_476549chr7:76013741-76013887-26.11-0.1906STYXL1ENST00000248600,ENST00000359697,ENST00000431581Frame-shift
ENSG00000272669ENST00000609212exon_skip_481699chr8:19824802-19824972-12.20-0.1402INTS10ENST00000397977Frame-shift
ENSG00000272669ENST00000609212exon_skip_511212chrX:71555189-71555385-19.36-0.1249OGTENST00000373719Frame-shift
ENSG00000272669ENST00000609212exon_skip_5818chr1:45568484-45568684-29.55-0.1572AKR1A1ENST00000351829,ENST00000372070Frame-shift
ENSG00000272669ENST00000609212exon_skip_129597chr15:75363998-75364188-26.03-0.1462MAN2C1ENST00000267978Frame-shift
ENSG00000272669ENST00000609212exon_skip_514339chrX:23713134-23713208-8.91-0.2345ACOT9ENST00000336430Frame-shift
ENSG00000272669ENST00000609212exon_skip_52701chr10:97468965-97469104-21.93-0.1874MMS19ENST00000370782,ENST00000438925Frame-shift
ENSG00000272669ENST00000609212exon_skip_374581chr3:50110378-50110463-18.25-0.3650RBM5ENST00000347869Frame-shift

check buttonlncRNA targets by miRNA.
lncRNA targets by miRNA
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source
ENSG00000272669hsa-mir-22ENST00000609212chr22:38742946-38743032168.00-81.5188NA
ENSG00000272669hsa-mir-22ENST00000609212chr22:38742844-38742932166.00-93.9987NA
ENSG00000272669hsa-mir-22ENST00000609212chr22:38742708-38742797165.00-93.1290NA

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Variants for RP3-508I15.21

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation
ENSG00000272669ENST00000609212BCKDHBENSG00000083123ENST00000369760-0.2704295-CHOL,KIRC,HNSC
ENSG00000272669ENST00000609212RASSF8ENSG00000123094ENST00000539545-0.136717-KIRC,KIRP
ENSG00000272669ENST00000609212UHRF1BP1LENSG00000111647ENST00000547428-0.10441-CHOL
ENSG00000272669ENST00000609212FBXO21ENSG00000135108ENST00000548840-0.10901-KIRC,KIRP
ENSG00000272669ENST00000609212SEC24BENSG00000138802ENST00000504968-0.2528299-CHOL
ENSG00000272669ENST00000609212SEC24BENSG00000138802ENST00000399100-0.1500361-CHOL
ENSG00000272669ENST00000609212ZYG11BENSG00000162378ENST00000545132-0.1046240-CHOL,READ
ENSG00000272669ENST00000609212RALBP1ENSG00000017797ENST00000019317-0.10611-KIRC
ENSG00000272669ENST00000609212RALBP1ENSG00000017797ENST00000383432-0.10611-KIRC
ENSG00000272669ENST00000609212NT5C2ENSG00000076685ENST00000458345-0.1146296-HNSC
ENSG00000272669ENST00000609212NT5C2ENSG00000076685ENST00000552185-0.1597103-HNSC
ENSG00000272669ENST00000609212NT5C2ENSG00000076685ENST00000470299-0.2212202-HNSC
ENSG00000272669ENST00000609212COBLL1ENSG00000082438ENST00000629362-0.5800240-CHOL,KIRC
ENSG00000272669ENST00000609212LPCAT3ENSG00000111684ENST00000540090-0.10111-CHOL
ENSG00000272669ENST00000609212BTDENSG00000169814ENST00000417015-0.108497-CHOL
ENSG00000272669ENST00000609212BTDENSG00000169814ENST00000449107-0.187944-CHOL
ENSG00000272669ENST00000609212BTDENSG00000169814ENST00000303498-0.10641-CHOL
ENSG00000272669ENST00000609212BTDENSG00000169814ENST00000437172-0.112452-CHOL
ENSG00000272669ENST00000609212BTDENSG00000169814ENST00000383778-0.10641-CHOL
ENSG00000272669ENST00000609212ABATENSG00000183044ENST00000567812-0.1174162-CHOL,KIRC,KIRP
ENSG00000272669ENST00000609212ABATENSG00000183044ENST00000425191-0.1519151-CHOL,KIRC,KIRP
ENSG00000272669ENST00000609212ABATENSG00000183044ENST00000569156-0.1280286-CHOL,KIRC,KIRP
ENSG00000272669ENST00000609212ABATENSG00000183044ENST00000562115-0.1563218-CHOL,KIRC,KIRP
ENSG00000272669ENST00000609212SLMAPENSG00000163681ENST00000495364-0.245098-PRAD,READ
ENSG00000272669ENST00000609212SLMAPENSG00000163681ENST00000494088-0.1375174-PRAD,READ
ENSG00000272669ENST00000609212ATP2A2ENSG00000174437ENST00000553144-0.1520181-HNSC
ENSG00000272669ENST00000609212SLC25A13ENSG00000004864ENST00000472162-0.1273166-CHOL
ENSG00000272669ENST00000609212SEC62ENSG00000008952ENST00000480708-0.10341-CHOL
ENSG00000272669ENST00000609212SEC62ENSG00000008952ENST00000487736-0.13511-CHOL
ENSG00000272669ENST00000609212ALAS1ENSG00000023330ENST00000310271-0.1035217-CHOL,KIRC
ENSG00000272669ENST00000609212ALAS1ENSG00000023330ENST00000484952-0.2119127-CHOL,KIRC
ENSG00000272669ENST00000609212ALAS1ENSG00000023330ENST00000493402-0.269371-CHOL,KIRC
ENSG00000272669ENST00000609212RETSATENSG00000042445ENST00000438611-0.13091-CHOL,READ
ENSG00000272669ENST00000609212L2HGDHENSG00000087299ENST00000261699-0.3862303-CHOL,KIRC,KIRP
ENSG00000272669ENST00000609212L2HGDHENSG00000087299ENST00000555423-0.2353207-CHOL,KIRC,KIRP
ENSG00000272669ENST00000609212L2HGDHENSG00000087299ENST00000555610-0.12296-CHOL,KIRC,KIRP
ENSG00000272669ENST00000609212MTHFD1ENSG00000100714ENST00000557370-0.1144159-CHOL
ENSG00000272669ENST00000609212SLC25A15ENSG00000102743ENST00000470509-0.11644-CHOL,KIRC,KIRP
ENSG00000272669ENST00000609212LONP2ENSG00000102910ENST00000285737-0.10151-CHOL
ENSG00000272669ENST00000609212LONP2ENSG00000102910ENST00000535754-0.1174159-CHOL
ENSG00000272669ENST00000609212LONP2ENSG00000102910ENST00000570174-0.103462-CHOL
ENSG00000272669ENST00000609212HIBADHENSG00000106049ENST00000428288-0.10071-CHOL,KIRC
ENSG00000272669ENST00000609212MPDZENSG00000107186ENST00000538841-0.103960-CHOL
ENSG00000272669ENST00000609212MPDZENSG00000107186ENST00000536827-0.136244-CHOL
ENSG00000272669ENST00000609212MPDZENSG00000107186ENST00000447879-0.1473131-CHOL
ENSG00000272669ENST00000609212MPDZENSG00000107186ENST00000546205-0.7930105-CHOL
ENSG00000272669ENST00000609212ACBD5ENSG00000107897ENST00000375888-0.205692-CHOL
ENSG00000272669ENST00000609212PNPOENSG00000108439ENST00000584061-0.143252-CHOL
ENSG00000272669ENST00000609212PNPOENSG00000108439ENST00000585320-0.108690-CHOL
ENSG00000272669ENST00000609212ALDH5A1ENSG00000112294ENST00000491546-0.730069-CHOL,KIRC
ENSG00000272669ENST00000609212GGCXENSG00000115486ENST00000430215-0.1427199-CHOL
ENSG00000272669ENST00000609212GGCXENSG00000115486ENST00000428479-0.109066-CHOL
ENSG00000272669ENST00000609212SCP2ENSG00000116171ENST00000528311-0.105953-CHOL,READ
ENSG00000272669ENST00000609212ACADMENSG00000117054ENST00000420607-0.1326270-CHOL,KIRC,HNSC,KIRP,READ
ENSG00000272669ENST00000609212ABCD3ENSG00000117528ENST00000315713-0.1868176-CHOL,KIRC,HNSC,READ
ENSG00000272669ENST00000609212ALDH6A1ENSG00000119711ENST00000555126-0.107265-CHOL,KIRC,HNSC,KIRP
ENSG00000272669ENST00000609212CALD1ENSG00000122786ENST00000417172-0.2338325-CHOL,PRAD,READ
ENSG00000272669ENST00000609212ITPR2ENSG00000123104ENST00000242737-0.4677125-CHOL,KIRC,HNSC,KIRP
ENSG00000272669ENST00000609212C16orf70ENSG00000125149ENST00000569277-0.117660-CHOL
ENSG00000272669ENST00000609212HSD17B4ENSG00000133835ENST00000513628-0.1006108-CHOL
ENSG00000272669ENST00000609212STX17ENSG00000136874ENST00000531035-0.102799-CHOL
ENSG00000272669ENST00000609212RDXENSG00000137710ENST00000534683-0.1303329-CHOL,READ
ENSG00000272669ENST00000609212RDXENSG00000137710ENST00000533678-0.137784-CHOL,READ
ENSG00000272669ENST00000609212TMBIM6ENSG00000139644ENST00000552635-0.161780-CHOL
ENSG00000272669ENST00000609212TMBIM6ENSG00000139644ENST00000552370-0.3009163-CHOL
ENSG00000272669ENST00000609212IQGAP2ENSG00000145703ENST00000396234-0.2561259-CHOL,KIRC,HNSC,KIRP,READ
ENSG00000272669ENST00000609212IQGAP2ENSG00000145703ENST00000502745-0.2561259-CHOL,KIRC,HNSC,KIRP,READ
ENSG00000272669ENST00000609212IQGAP2ENSG00000145703ENST00000513534-0.12121-CHOL,KIRC,HNSC,KIRP,READ
ENSG00000272669ENST00000609212GOLIM4ENSG00000173905ENST00000309027-0.3117201-CHOL
ENSG00000272669ENST00000609212TCAIMENSG00000179152ENST00000417237-0.1105399-CHOL,KIRC
ENSG00000272669ENST00000609212DHTKD1ENSG00000181192ENST00000263035-0.11111-CHOL
ENSG00000272669ENST00000609212DHTKD1ENSG00000181192ENST00000448829-0.1332205-CHOL
ENSG00000272669ENST00000609212BACE1ENSG00000186318ENST00000510630-0.3294194-CHOL
ENSG00000272669ENST00000609212BACE1ENSG00000186318ENST00000428381-0.278965-CHOL
ENSG00000272669ENST00000609212BACE1ENSG00000186318ENST00000513780-0.278965-CHOL
ENSG00000272669ENST00000609212BACE1ENSG00000186318ENST00000445823-0.278965-CHOL
ENSG00000272669ENST00000609212ENTPD5ENSG00000187097ENST00000555829-0.10221-CHOL,KIRP,READ
ENSG00000272669ENST00000609212NKIRAS1ENSG00000197885ENST00000416026-0.7183345-CHOL
ENSG00000272669ENST00000609212ETFRF1ENSG00000205707ENST00000554266-0.1218276-CHOL
ENSG00000272669ENST00000609212BCKDHAENSG00000248098ENST00000269980-0.10461-CHOL
ENSG00000272669ENST00000609212BCKDHAENSG00000248098ENST00000457836-0.10461-CHOL
ENSG00000272669ENST00000609212BCKDHAENSG00000248098ENST00000544905-0.124127-CHOL
ENSG00000272669ENST00000609212SELENOPENSG00000250722ENST00000507920-0.1073117-CHOL,KIRP,READ
ENSG00000272669ENST00000609212KIAA1191ENSG00000122203ENST00000510164-0.1392144-KIRP
ENSG00000272669ENST00000609212KIAA1191ENSG00000122203ENST00000533553-0.201271-KIRP
ENSG00000272669ENST00000609212ATL1ENSG00000198513ENST00000556067-0.118860-HNSC,READ
ENSG00000272669ENST00000609212SMARCA2ENSG00000080503ENST00000382186-0.7167234-CHOL,KIRP
ENSG00000272669ENST00000609212BRPF3ENSG00000096070ENST00000357641-0.12311-KIRP
ENSG00000272669ENST00000609212BRPF3ENSG00000096070ENST00000339717-0.12311-KIRP
ENSG00000272669ENST00000609212BRPF3ENSG00000096070ENST00000534694-0.12311-KIRP
ENSG00000272669ENST00000609212USP46ENSG00000109189ENST00000508499-0.3018114-KIRC,KIRP
ENSG00000272669ENST00000609212USP46ENSG00000109189ENST00000512656-0.2572276-KIRC,KIRP
ENSG00000272669ENST00000609212SLC25A24ENSG00000085491ENST00000569674-0.101966-READ
ENSG00000272669ENST00000609212CNIH1ENSG00000100528ENST00000556113-0.1589196-CHOL
ENSG00000272669ENST00000609212SEC23AENSG00000100934ENST00000545328-0.11071-CHOL,PRAD
ENSG00000272669ENST00000609212SEC23AENSG00000100934ENST00000548032-0.12991-CHOL,PRAD
ENSG00000272669ENST00000609212SEC23AENSG00000100934ENST00000557280-0.1290195-CHOL,PRAD
ENSG00000272669ENST00000609212SEC23AENSG00000100934ENST00000553970-0.1290195-CHOL,PRAD
ENSG00000272669ENST00000609212PCYOX1ENSG00000116005ENST00000433351-0.10711-CHOL,KIRP
ENSG00000272669ENST00000609212TNS3ENSG00000136205ENST00000442536-0.201481-KIRP
ENSG00000272669ENST00000609212TNS3ENSG00000136205ENST00000458317-0.854353-KIRP
ENSG00000272669ENST00000609212SECISBP2LENSG00000138593ENST00000561428-0.1101248-HNSC,READ
ENSG00000272669ENST00000609212PDLIM5ENSG00000163110ENST00000512274-0.1080134-CHOL,HNSC
ENSG00000272669ENST00000609212PDLIM5ENSG00000163110ENST00000542407-0.1332184-CHOL,HNSC
ENSG00000272669ENST00000609212PDLIM5ENSG00000163110ENST00000514743-0.1512183-CHOL,HNSC
ENSG00000272669ENST00000609212PDLIM5ENSG00000163110ENST00000509357-0.116247-CHOL,HNSC
ENSG00000272669ENST00000609212PDLIM5ENSG00000163110ENST00000506632-0.19321-CHOL,HNSC
ENSG00000272669ENST00000609212ILKENSG00000166333ENST00000532063-0.139688-PRAD,READ
ENSG00000272669ENST00000609212ILKENSG00000166333ENST00000299421-0.123592-PRAD,READ
ENSG00000272669ENST00000609212ILKENSG00000166333ENST00000537806-0.1311102-PRAD,READ
ENSG00000272669ENST00000609212ILKENSG00000166333ENST00000420936-0.1311104-PRAD,READ
ENSG00000272669ENST00000609212ILKENSG00000166333ENST00000528995-0.139696-PRAD,READ
ENSG00000272669ENST00000609212ILKENSG00000166333ENST00000396751-0.123592-PRAD,READ
ENSG00000272669ENST00000609212ILKENSG00000166333ENST00000526318-0.139691-PRAD,READ
ENSG00000272669ENST00000609212DAG1ENSG00000173402ENST00000515359-0.11671-KIRC
ENSG00000272669ENST00000609212DAG1ENSG00000173402ENST00000308775-0.11671-KIRC
ENSG00000272669ENST00000609212DAG1ENSG00000173402ENST00000539901-0.11671-KIRC
ENSG00000272669ENST00000609212DAG1ENSG00000173402ENST00000545947-0.11671-KIRC
ENSG00000272669ENST00000609212DAG1ENSG00000173402ENST00000538711-0.11671-KIRC
ENSG00000272669ENST00000609212DAG1ENSG00000173402ENST00000541308-0.11671-KIRC
ENSG00000272669ENST00000609212DAG1ENSG00000173402ENST00000435508-0.240250-KIRC
ENSG00000272669ENST00000609212FEZ2ENSG00000171055ENST00000414288-0.1344291-READ
ENSG00000272669ENST00000609212IL6STENSG00000134352ENST00000502326-0.275569-CHOL,HNSC,READ
ENSG00000272669ENST00000609212NCOA4ENSG00000266412ENST00000578454-0.1040136-CHOL,READ
ENSG00000272669ENST00000609212NCOA4ENSG00000266412ENST00000579039-0.1161151-CHOL,READ
ENSG00000272669ENST00000609212IBTKENSG00000005700ENST00000503631-0.4513226-CHOL
ENSG00000272669ENST00000609212IBTKENSG00000005700ENST00000510291-0.7367452-CHOL
ENSG00000272669ENST00000609212NDUFS1ENSG00000023228ENST00000449699-0.146075-CHOL,KIRC,HNSC
ENSG00000272669ENST00000609212NDUFS1ENSG00000023228ENST00000432169-0.146075-CHOL,KIRC,HNSC
ENSG00000272669ENST00000609212NDUFS1ENSG00000023228ENST00000456284-0.1179175-CHOL,KIRC,HNSC

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types
ENSG00000272669RP3-508I15.21,hsa-mir-22,UCKL1CHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,C1orf35CHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,ILKAPCHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,CAPN10CHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,KAT2ACHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,NCAPH2CHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,TRABDCHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,POLR2HCHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,ING5CHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,CEP131CHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,C1orf159CHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,MRPL53CHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,DHX34CHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,FBXO46CHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,ATG4BCHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,SNRPACHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,INTS11CHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,CLASRPCHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,UBXN11CHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,ATAD3BCHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,NT5CCHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,SRRTCHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,LRRC14CHOL,ACC,PAAD,KIRP,LIHC
ENSG00000272669RP3-508I15.21,hsa-mir-22,MTA1CHOL,ACC,PAAD,KIRP,LIHC

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000272669.1ENST00000609212.193448167