 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CNIH1,SNX2,SEC23B,AGFG1,RAB5C,EIF4G2,HSPA8,NIPA2,NAA50,PLIN3,MAIP1,IQGAP1,DYNC1I2,PTPN11,ITFG1,PDCD10,EIF4G1,STRAP,PRMT5,TMBIM6,ATP5PB,DNAJC14,ASNSD1,PSMC1,CAP1,CLTC,MAPK1,NOMO2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
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| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000272668 | ENST00000608430 | exon_skip_370518 | chr22:50247691-50247776 | -14.80 | -0.1973 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000272668 | ENST00000608430 | exon_skip_382458 | chr3:38131595-38131638 | -7.04 | -0.4693 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000272668 | ENST00000608430 | exon_skip_9446 | chr1:147270931-147271005 | -8.96 | -0.1519 | CHD1L | ENST00000369258 | Frame-shift | | ENSG00000272668 | ENST00000608430 | exon_skip_16568 | chr1:201989382-201989531 | -14.95 | -0.1053 | RNPEP | ENST00000295640 | Frame-shift | | ENSG00000272668 | ENST00000608430 | exon_skip_66482 | chr11:126274926-126275021 | -13.72 | -0.1633 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000272668 | ENST00000608430 | exon_skip_95407 | chr12:95040475-95040597 | -13.91 | -0.1276 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000272668 | ENST00000608430 | exon_skip_103007 | chr13:37025319-37025437 | -12.83 | -0.1156 | SUPT20H | ENST00000350612 | Frame-shift | | ENSG00000272668 | ENST00000608430 | exon_skip_114365 | chr14:74290026-74290118 | -12.32 | -0.1925 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000272668 | ENST00000608430 | exon_skip_127618 | chr15:58890280-58890461 | -16.61 | -0.1186 | SLTM | ENST00000380516 | Frame-shift | | ENSG00000272668 | ENST00000608430 | exon_skip_290158 | chr17:42953723-42953778 | -10.07 | -0.2456 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000272668 | ENST00000608430 | exon_skip_325393 | chr2:47021861-47021979 | -15.20 | -0.2111 | TTC7A | ENST00000319190 | Frame-shift | | ENSG00000272668 | ENST00000608430 | exon_skip_442657 | chr5:74730259-74730398 | -15.85 | -0.1366 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000272668 | ENST00000608430 | exon_skip_462144 | chr6:125298713-125298816 | -12.98 | -0.1708 | HDDC2 | ENST00000398153 | Frame-shift | | ENSG00000272668 | ENST00000608430 | exon_skip_470226 | chr7:103307595-103307708 | -13.37 | -0.1555 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000272668 | ENST00000608430 | exon_skip_509943 | chrX:47175018-47175092 | -13.29 | -0.2416 | RBM10 | ENST00000377604 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | | ENSG00000272668 | ENSG00000004534 | RBM6 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | SARC,OV,UCS,PCPG,PAAD,THCA |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000272668 | ENST00000608430 | EIF4G1 | ENSG00000114867 | ENST00000382330 | -0.2273 | 112 | - | PCPG | | ENSG00000272668 | ENST00000608430 | MAIP1 | ENSG00000162972 | ENST00000435773 | -0.2415 | 530 | - | CHOL,PCPG | | ENSG00000272668 | ENST00000608430 | CNIH1 | ENSG00000100528 | ENST00000556113 | -0.1028 | 34 | - | CHOL | | ENSG00000272668 | ENST00000608430 | TMBIM6 | ENSG00000139644 | ENST00000552635 | -0.1374 | 201 | - | CHOL,PCPG | | ENSG00000272668 | ENST00000608430 | TMBIM6 | ENSG00000139644 | ENST00000552370 | -0.2189 | 393 | - | CHOL,PCPG | | ENSG00000272668 | ENST00000608430 | NAA50 | ENSG00000121579 | ENST00000493900 | -0.2612 | 327 | - | PCPG |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000272668.1 | ENST00000608430.1 | 117 | 809 | 456 |
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