 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF30,ZNF16,ILF3,GLI4,RBM39,EDC3,CIRBP,MZF1,NRF1,RFX5,AKAP8,ZNF2,KAT7,ZXDC,SUGP2,TRUB2,DMTF1,ZNF77,ZNF24,DDX52,ZNF74,TBP,IKZF5,DDX55,KMT2B,ZBTB5,ZFP14,RNPC3,SAFB2,THOC1,ZNF25,CHTOP,TFAP4,DDX59,CWC22,ZBED5,CENPT,TTC14,ZBED3,RBM4,RC3H1,SUGP1,ZNF44,ZNF91,RBMX,RBM4B,CSTF3,TIGD6,RBM26,ZFP1,RBM14,ZBTB3,ADNP,MYEF2,TERF2,MBD1,ASH1L,CASC3,ZFP37,ZFP30,SP4,RBM43,CPSF7,THAP9,USF1,ZBTB6,CXXC1,ZNF34,THAP6,PATZ1,DDX17,CSTF1,PRR12,THYN1,ZC3H8,MEX3B,TTF1,HSF4,SART3,DZIP3,ILF2,ZFP62,ZNF48,SGSM2,SF3B4,ELK4,TIGD1,RBM45,DDX51,UNC50,SRSF2,MBD6,DDX31,SALL2,MYNN,ZMAT1,ZNF83,NSUN6,ZNF3,NXF1,ZNF8,ZNF18,NR2C2,EIF2D,GPBP1,ARNT,RBM6,ZNF14,RBM48,PUM2,XPO1,RBM5,ELF2,SMAD4,ZNF43,ZNF17,ZNF84,DDX42,TRA2A,RBM8A,SRSF7,HINFP,XPA,NR2C1,ZFP3,MEF2D,SFPQ,TDRKH,RBM33,NOL8,ZNF10 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | SFPQ,ZNF48,TBP,DDX17,HSF4,MZF1,SF3B4,THAP6,ZNF18,RBM5,CXXC1,DDX52,ZMAT1,ZNF14,TIGD6,SRSF5,ZFP37,RBM43,MYNN,ZNF3,CPSF7,ZNF83,THAP9,RBM6,DHX30,ZFP30,EIF2D,ZFP3,ZNF30,ZNF2,TRA2A,BPTF,ZBTB6,CIRBP | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000272654 | ENST00000608236 | exon_skip_382458 | chr3:38131595-38131638 | -11.43 | -0.2858 | ACAA1 | ENST00000333167 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000272654.1 | ENST00000608236.1 | 63 | 319 | 128 |
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