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lncRNA: ENSG00000272645

Summary for RP11-504P24.8

Gene summary

Gene information	Ensembl ID	ENSG00000272645
	Gene symbol	RP11-504P24.8
	Gene name
	HGNC
	Entrez ID
	Gene type	lincRNA
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-504P24.8

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000272645	2.406745e+02	1.343892e+00	1.385431e-01	9.700171e+00	3.010000e-22	2.050000e-21	UP	KIRC
ENSG00000272645	2.986321e+02	1.236379e+00	2.347211e-01	5.267437e+00	1.380000e-07	1.510000e-06	UP	BLCA
ENSG00000272645	3.665073e+02	1.062614e+00	2.089596e-01	5.085260e+00	3.670000e-07	1.710000e-06	UP	KIRP
ENSG00000272645	2.806932e+02	1.117652e+00	1.403795e-01	7.961644e+00	1.700000e-15	8.550000e-15	UP	LUSC
ENSG00000272645	2.648848e+02	1.327866e+00	1.443208e-01	9.200794e+00	3.550000e-20	3.650000e-19	UP	LUAD
ENSG00000272645	1.476141e+02	1.734838e+00	2.912933e-01	5.955641e+00	2.590000e-09	6.050000e-08	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000272645	5.460797e-01	1.043691e-04	CHOL	3.091446e-04

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lncRNA-Protein interaction for RP11-504P24.8

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000101126	ADNP	52.78	94.5434	Q9H2P0	TF,Epi	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000104885	DOT1L	47.25	91.7452	Q8TEK3	TF,Epi	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000010803	SCMH1	37.5	94.6721	Q96GD3	TF,Epi	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000155363	MOV10	71.07	95.1756	Q9HCE1	RBP,Epi	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000277258	PCGF2	15.73	90.8603	P35227	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000168152	THAP9	76.02	91.9616	Q9H5L6	TF	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000101126	ADNP	52.78	94.6215	Q9H2P0	TF,Epi	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000104885	DOT1L	47.25	90.1143	Q8TEK3	TF,Epi	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000010803	SCMH1	37.5	94.6894	Q96GD3	TF,Epi	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000025156	HSF2	24.77	93.7866	Q03933	TF	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000148200	NR6A1	15.66	93.1992	Q15406	TF	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000256223	ZNF10	11.99	92.9765	P21506	TF	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000120798	NR2C1	9.57	91.6205	P13056	TF	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000177463	NR2C2	9.44	90.1038	P49116	TF	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000196378	ZNF34	8.03	90.3047	Q8IZ26	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000155363	MOV10	71.07	93.4103	Q9HCE1	RBP,Epi	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000013573	DDX11	63.36	93.9546	Q96FC9	RBP	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000122965	RBM19	56.28	94.6732	Q9Y4C8	RBP	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000106344	RBM28	53.13	90.5909	Q9NW13	RBP	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000082898	XPO1	52.18	90.384	O14980	RBP	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000079134	THOC1	48.12	94.0977	Q96FV9	RBP	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000071894	CPSF1	47.98	95.5563	Q10570	RBP	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000176102	CSTF3	47.91	94.9115	Q12996	RBP	NA
ENSG00000272645	ENST00000608760	RP11-504P24.8	ENSG00000111364	DDX55	8.33	92.5642	Q8NHQ9	RBP	NA

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lncRNA-DNA interaction for RP11-504P24.8

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ZNF30,RBM19,ILF3,GLI4,RBM39,EDC3,MYPOP,CIRBP,MZF1,MYSM1,AKAP8,ZNF2,ZXDC,SUGP2,DMTF1,ZNF77,RBM28,ZNF74,DDX55,KMT2B,STAT2,NR6A1,RNPC3,ZFP69,SAFB2,THOC1,MNT,CHTOP,TFAP4,DDX59,LSM5,ZBED5,CENPT,TTC14,ZGLP1,MRM1,SUGP1,ZNF44,RBM4B,RBPMS,CSTF3,RBM26,CPSF1,RNPS1,RBM14,NR2F6,ZBTB3,GZF1,ADNP,MYEF2,CWC15,SURF6,NFYC,DHX34,PPIE,CPSF7,IRF7,THAP9,THOC2,USF1,CXXC1,ZNF34,THAP6,MOV10,DDX17,E2F5,SRRM2,E2F6,ZNF22,PHF1,THYN1,ZC3H8,HSF4,THOC6,ZFP62,SGSM2,CELF1,SCMH1,ELK4,RBM45,TIGD1,DDX51,PCBP4,SRSF2,MBD6,DDX31,ZGPAT,PBX4,ZMAT1,ZNF83,NSUN6,ZNF3,NXF1,ZNF18,NR2C2,PCGF2,DDX11,TGIF1,RBM6,HMGN3,ZNF14,KHDC1,NOP2,RBM48,GMEB2,NOL3,XPO1,RBM5,SRCAP,DOT1L,ZNF84,DDX42,BAZ2B,TRA2A,RBM8A,ZNF69,NR2C1,ZFP3,SFPQ,RBM33,NOL8,ZNF10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-504P24.8

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000272645	ENST00000608760	exon_skip_1234	chr1:11658532-11658628	-20.33	-0.2337	FBXO44	ENST00000251547,ENST00000376770	In-frame
ENSG00000272645	ENST00000608760	exon_skip_470077	chr7:102397619-102397698	-12.44	-0.1829	PRKRIP1	ENST00000397912,ENST00000496391	Frame-shift

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000272645	ENST00000608760	exon_skip_62623	chr11:69079833-69079883	-11.91	-0.3503	TPCN2	ENST00000294309	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_66482	chr11:126274926-126275021	-13.99	-0.2028	FOXRED1	ENST00000263578	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_111863	chr14:23565815-23565892	-15.22	-0.2416	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_302168	chr19:10680345-10680443	-13.65	-0.1500	ILF3	ENST00000590261	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_327433	chr2:86125794-86125880	-9.48	-0.1317	PTCD3	ENST00000254630	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_370518	chr22:50247691-50247776	-15.09	-0.2125	HDAC10	ENST00000216271	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_377198	chr3:123130479-123130616	-14.75	-0.1143	PDIA5	ENST00000316218	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_382458	chr3:38131595-38131638	-8.65	-0.2218	ACAA1	ENST00000333167	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_446758	chr5:178212972-178213103	-19.47	-0.2049	PHYKPL	ENST00000308158	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_499567	chr9:128325142-128325239	-18.95	-0.1974	COQ4	ENST00000300452	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_5818	chr1:45568484-45568684	-20.38	-0.1056	AKR1A1	ENST00000351829,ENST00000372070	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_11029	chr1:154989559-154989707	-24.88	-0.1790	FLAD1	ENST00000292180	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_41813	chr10:68337857-68337996	-23.27	-0.2006	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_66185	chr11:124626472-124626609	-18.92	-0.1564	TBRG1	ENST00000441174	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_92074	chr12:50142052-50142110	-6.97	-0.1742	CERS5	ENST00000317551	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_95407	chr12:95040475-95040597	-13.36	-0.1152	NR2C1	ENST00000333003	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_133217	chr16:8635038-8635079	-13.73	-0.3613	METTL22	ENST00000381920	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_309204	chr19:49181348-49181461	-24.18	-0.2159	TRPM4	ENST00000252826	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_319223	chr19:43526200-43526349	-24.05	-0.2227	ETHE1	ENST00000292147	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_340759	chr2:85552415-85552567	-19.70	-0.1407	GGCX	ENST00000233838	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_358821	chr20:63943652-63943669	-6.35	-0.4885	UCKL1	ENST00000354216	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_374551	chr3:50100531-50100605	-14.00	-0.2373	RBM5	ENST00000347869	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_380242	chr3:186784961-186785101	-15.64	-0.1282	EIF4A2	ENST00000323963	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_436035	chr5:79656957-79657001	-6.15	-0.1662	TENT2	ENST00000296783,ENST00000428308,ENST00000453514	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_442657	chr5:74730259-74730398	-15.95	-0.2658	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_446770	chr5:178215275-178215430	-19.36	-0.1249	PHYKPL	ENST00000308158	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_477099	chr7:92509328-92509411	-10.87	-0.1510	PEX1	ENST00000248633	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_4796	chr1:41007448-41007545	-14.98	-0.2203	CTPS1	ENST00000372616,ENST00000372621	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_7523	chr1:78660553-78660654	-12.34	-0.1469	IFI44	ENST00000370747	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_9446	chr1:147270931-147271005	-10.09	-0.2402	CHD1L	ENST00000369258	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_16568	chr1:201989382-201989531	-15.47	-0.1105	RNPEP	ENST00000295640	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_41841	chr10:68756272-68756483	-19.61	-0.1114	CCAR1	ENST00000265872	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_52701	chr10:97468965-97469104	-17.96	-0.1460	MMS19	ENST00000370782,ENST00000438925	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_53559	chr10:101793912-101793998	-13.04	-0.1716	OGA	ENST00000361464	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_58412	chr11:43892040-43892129	-8.92	-0.1075	ALKBH3	ENST00000302708	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_59071	chr11:47234756-47234934	-16.61	-0.1115	DDB2	ENST00000256996	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_74009	chr11:64773429-64773505	-16.00	-0.2462	SF1	ENST00000377390	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_103007	chr13:37025319-37025437	-13.91	-0.1464	SUPT20H	ENST00000350612	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_114365	chr14:74290026-74290118	-18.45	-0.2754	ABCD4	ENST00000356924	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_139933	chr16:90035632-90035687	-9.23	-0.2495	GAS8	ENST00000268699	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_287763	chr17:28884224-28884315	-18.77	-0.2888	FLOT2	ENST00000394908	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_290158	chr17:42953723-42953778	-11.54	-0.2263	AARSD1	ENST00000427569	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_313557	chr19:5786748-5786845	-17.51	-0.1946	DUS3L	ENST00000309061	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_335558	chr2:240596680-240596942	-28.39	-0.1113	CAPN10	ENST00000391984	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_353131	chr20:58669290-58669453	-25.76	-0.2576	STX16	ENST00000371141	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_364260	chr22:29291561-29291599	-9.48	-0.2963	EWSR1	ENST00000397938	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_365497	chr22:38067703-38067770	-12.97	-0.4323	PICK1	ENST00000356976,ENST00000404072	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_374497	chr3:49999439-49999513	-13.21	-0.2752	RBM6	ENST00000266022	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_378467	chr3:143023974-143024018	-8.77	-0.2139	U2SURP	ENST00000473835	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_438188	chr5:141638954-141639021	-13.41	-0.2629	RELL2	ENST00000297164,ENST00000444782	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_441368	chr5:32380074-32380172	-14.04	-0.2380	ZFR	ENST00000265069	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_444499	chr5:138164086-138164133	-7.41	-0.1807	BRD8	ENST00000254900	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_445390	chr5:150403120-150403312	-21.95	-0.1372	CD74	ENST00000009530	In-frame
ENSG00000272645	ENST00000608760	exon_skip_470226	chr7:103307595-103307708	-12.91	-0.1218	PMPCB	ENST00000249269	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_511212	chrX:71555189-71555385	-20.40	-0.1068	OGT	ENST00000373719	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_374581	chr3:50110378-50110463	-10.28	-0.1512	RBM5	ENST00000347869	Frame-shift
ENSG00000272645	ENST00000608760	exon_skip_297191	chr18:62280359-62280442	-14.26	-0.2502	RELCH	ENST00000398130	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-504P24.8

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_22920	ENSG00000272645.2	chr1	223953239	-	lincRNA	RP11-504P24.8	ENST00000608760.2	lincRNA	RP11-504P24.8-001
LncEditing_22929	ENSG00000272645.2	chr1	223953351	-	lincRNA	RP11-504P24.8	ENST00000608760.2	lincRNA	RP11-504P24.8-001

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000272645	LncEditing_22929	GBM	chr1_223953351_-	5.697471e+00	2.513593e+00	8.470478e-01	7.535044e+00	4.881694e-14	6.268715e-13	UP
ENSG00000272645	LncEditing_22929	OV	chr1_223953351_-	6.816589e+00	3.831677e+00	1.203262e+00	8.727444e+00	2.604933e-18	1.008520e-17	UP
ENSG00000272645	LncEditing_22920	ESCA	chr1_223953239_-	6.760747e+00	3.574044e+00	1.087400e+00	4.958466e+00	7.105204e-07	1.162569e-06	UP
ENSG00000272645	LncEditing_22929	ESCA	chr1_223953351_-	5.407274e+00	3.337601e+00	1.436596e+00	5.185445e+00	2.154991e-07	3.831096e-07	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID	RBP ID	RBP Gene Name	Exon Skipping ID	Skipped Exon	EX Gene Name	EX Affected TransID	ORF_anno	Cancer Type
ENSG00000272645	ENSG00000079134	THOC1	exon_skip_370518	ENSG00000100429:chr22:50247691-50247776	HDAC10	ENST00000216271	Frame-shift	SARC,UVM,SKCM,READ,PRAD,PCPG,PAAD,THCA
ENSG00000272645	ENSG00000079134	THOC1	exon_skip_377198	ENSG00000065485:chr3:123130479-123130616	PDIA5	ENST00000316218	Frame-shift	SARC,UVM,UCS,PCPG,PAAD,TGCT
ENSG00000272645	ENSG00000111364	DDX55	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	STAD,UVM,SKCM,READ,OV,PAAD,THCA
ENSG00000272645	ENSG00000079134	THOC1	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	SARC,STAD,UVM,SKCM,READ,MESO,PRAD,UCS,PCPG,PAAD,TGCT,THCA
ENSG00000272645	ENSG00000111364	DDX55	exon_skip_380242	ENSG00000156976:chr3:186784961-186785101	EIF4A2	ENST00000323963	Frame-shift	STAD,READ,PRAD,PAAD,THCA
ENSG00000272645	ENSG00000079134	THOC1	exon_skip_442657	ENSG00000164347:chr5:74730259-74730398	GFM2	ENST00000296805,ENST00000509430	Frame-shift	UVM,SKCM,READ,UCS,PCPG,PAAD,THCA
ENSG00000272645	ENSG00000079134	THOC1	exon_skip_53559	ENSG00000198408:chr10:101793912-101793998	OGA	ENST00000361464	Frame-shift	UVM,PCPG,PAAD,TGCT,THCA
ENSG00000272645	ENSG00000079134	THOC1	exon_skip_470226	ENSG00000105819:chr7:103307595-103307708	PMPCB	ENST00000249269	Frame-shift	UVM,SKCM,LIHC,UCS,PCPG,PAAD,TGCT,THCA

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000272645.2	ENST00000608760.2	61	69	254

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential